co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G164558

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
2	GO:0042221: response to chemical	0.00E+00
3	GO:0010028: xanthophyll cycle	0.00E+00
4	GO:0019676: ammonia assimilation cycle	0.00E+00
5	GO:0030243: cellulose metabolic process	0.00E+00
6	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
7	GO:0055070: copper ion homeostasis	0.00E+00
8	GO:0051188: cofactor biosynthetic process	0.00E+00
9	GO:0042550: photosystem I stabilization	0.00E+00
10	GO:2000505: regulation of energy homeostasis	0.00E+00
11	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
12	GO:0015979: photosynthesis	2.38E-14
13	GO:0015995: chlorophyll biosynthetic process	6.57E-11
14	GO:0016117: carotenoid biosynthetic process	1.01E-10
15	GO:0006098: pentose-phosphate shunt	2.66E-10
16	GO:0010207: photosystem II assembly	3.54E-10
17	GO:0009773: photosynthetic electron transport in photosystem I	9.69E-09
18	GO:0043085: positive regulation of catalytic activity	1.08E-07
19	GO:0000023: maltose metabolic process	4.57E-07
20	GO:0009416: response to light stimulus	7.43E-07
21	GO:0019252: starch biosynthetic process	8.53E-07
22	GO:0006364: rRNA processing	1.01E-06
23	GO:0070838: divalent metal ion transport	1.46E-06
24	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.86E-06
25	GO:0009767: photosynthetic electron transport chain	2.55E-06
26	GO:0009637: response to blue light	4.14E-06
27	GO:0010114: response to red light	6.08E-06
28	GO:0030003: cellular cation homeostasis	6.26E-06
29	GO:0010218: response to far red light	8.67E-06
30	GO:0010155: regulation of proton transport	8.91E-06
31	GO:0010027: thylakoid membrane organization	1.15E-05
32	GO:0010103: stomatal complex morphogenesis	1.16E-05
33	GO:0080167: response to karrikin	2.96E-05
34	GO:0006814: sodium ion transport	3.71E-05
35	GO:0009902: chloroplast relocation	4.19E-05
36	GO:0000096: sulfur amino acid metabolic process	1.34E-04
37	GO:0009772: photosynthetic electron transport in photosystem II	1.34E-04
38	GO:0006766: vitamin metabolic process	3.11E-04
39	GO:0009411: response to UV	3.11E-04
40	GO:0009108: coenzyme biosynthetic process	3.11E-04
41	GO:0010206: photosystem II repair	3.11E-04
42	GO:0009106: lipoate metabolic process	3.11E-04
43	GO:0015986: ATP synthesis coupled proton transport	3.45E-04
44	GO:0022900: electron transport chain	3.62E-04
45	GO:0015977: carbon fixation	5.60E-04
46	GO:0009072: aromatic amino acid family metabolic process	5.60E-04
47	GO:0016556: mRNA modification	8.85E-04
48	GO:0019344: cysteine biosynthetic process	9.20E-04
49	GO:0055114: oxidation-reduction process	1.00E-03
50	GO:0019761: glucosinolate biosynthetic process	1.02E-03
51	GO:0006546: glycine catabolic process	1.08E-03
52	GO:0006875: cellular metal ion homeostasis	1.20E-03
53	GO:0044272: sulfur compound biosynthetic process	1.20E-03
54	GO:0042793: transcription from plastid promoter	1.52E-03
55	GO:0006636: unsaturated fatty acid biosynthetic process	1.76E-03
56	GO:0051289: protein homotetramerization	2.00E-03
57	GO:0019760: glucosinolate metabolic process	2.00E-03
58	GO:0016024: CDP-diacylglycerol biosynthetic process	2.00E-03
59	GO:0006833: water transport	2.02E-03
60	GO:0009750: response to fructose	2.02E-03
61	GO:0019684: photosynthesis, light reaction	2.29E-03
62	GO:0009624: response to nematode	2.30E-03
63	GO:0009644: response to high light intensity	2.46E-03
64	GO:0009966: regulation of signal transduction	2.59E-03
65	GO:0009595: detection of biotic stimulus	2.91E-03
66	GO:0045037: protein import into chloroplast stroma	2.91E-03
67	GO:0006014: D-ribose metabolic process	2.91E-03
68	GO:0010196: nonphotochemical quenching	2.91E-03
69	GO:0050821: protein stabilization	2.91E-03
70	GO:0016485: protein processing	2.91E-03
71	GO:0006782: protoporphyrinogen IX biosynthetic process	2.91E-03
72	GO:0019216: regulation of lipid metabolic process	2.91E-03
73	GO:0051260: protein homooligomerization	2.91E-03
74	GO:0009409: response to cold	2.92E-03
75	GO:0046777: protein autophosphorylation	3.26E-03
76	GO:0009695: jasmonic acid biosynthetic process	3.65E-03
77	GO:0009813: flavonoid biosynthetic process	3.99E-03
78	GO:0043900: regulation of multi-organism process	3.99E-03
79	GO:0034755: iron ion transmembrane transport	3.99E-03
80	GO:0019748: secondary metabolic process	3.99E-03
81	GO:0007568: aging	3.99E-03
82	GO:0015994: chlorophyll metabolic process	3.99E-03
83	GO:0006796: phosphate-containing compound metabolic process	3.99E-03
84	GO:0050790: regulation of catalytic activity	3.99E-03
85	GO:0006783: heme biosynthetic process	5.14E-03
86	GO:0046688: response to copper ion	5.14E-03
87	GO:0006542: glutamine biosynthetic process	5.14E-03
88	GO:0017148: negative regulation of translation	5.14E-03
89	GO:0000413: protein peptidyl-prolyl isomerization	5.36E-03
90	GO:0033014: tetrapyrrole biosynthetic process	6.41E-03
91	GO:0034660: ncRNA metabolic process	6.41E-03
92	GO:0046939: nucleotide phosphorylation	7.78E-03
93	GO:0010310: regulation of hydrogen peroxide metabolic process	7.78E-03
94	GO:0005985: sucrose metabolic process	7.78E-03
95	GO:0009832: plant-type cell wall biogenesis	1.08E-02
96	GO:0006006: glucose metabolic process	1.24E-02
97	GO:0009697: salicylic acid biosynthetic process	1.24E-02
98	GO:0006754: ATP biosynthetic process	1.24E-02
99	GO:0006354: DNA-templated transcription, elongation	1.24E-02
100	GO:0009744: response to sucrose	1.27E-02
101	GO:0006096: glycolytic process	1.37E-02
102	GO:0006779: porphyrin-containing compound biosynthetic process	1.42E-02
103	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.42E-02
104	GO:0009765: photosynthesis, light harvesting	1.42E-02
105	GO:0008652: cellular amino acid biosynthetic process	1.51E-02
106	GO:0046854: phosphatidylinositol phosphorylation	1.60E-02
107	GO:0006108: malate metabolic process	1.78E-02
108	GO:0006655: phosphatidylglycerol biosynthetic process	1.78E-02
109	GO:0031408: oxylipin biosynthetic process	1.78E-02
110	GO:0007030: Golgi organization	1.98E-02
111	GO:0006972: hyperosmotic response	2.18E-02
112	GO:0016049: cell growth	2.18E-02
113	GO:0006631: fatty acid metabolic process	2.40E-02
114	GO:0030154: cell differentiation	2.40E-02
115	GO:0015992: proton transport	2.40E-02
116	GO:0009749: response to glucose	2.40E-02
117	GO:0009657: plastid organization	2.40E-02
118	GO:0016126: sterol biosynthetic process	2.40E-02
119	GO:0018298: protein-chromophore linkage	2.61E-02
120	GO:0006612: protein targeting to membrane	2.84E-02
121	GO:0010200: response to chitin	2.84E-02
122	GO:0010363: regulation of plant-type hypersensitive response	3.07E-02
123	GO:0006807: nitrogen compound metabolic process	3.07E-02
124	GO:0010224: response to UV-B	3.07E-02
125	GO:0035304: regulation of protein dephosphorylation	3.07E-02
126	GO:0006139: nucleobase-containing compound metabolic process	3.07E-02
127	GO:0009867: jasmonic acid mediated signaling pathway	3.31E-02
128	GO:0009817: defense response to fungus, incompatible interaction	3.31E-02
129	GO:0031348: negative regulation of defense response	3.31E-02
130	GO:0009853: photorespiration	4.07E-02
131	GO:0000165: MAPK cascade	4.33E-02
132	GO:0009735: response to cytokinin	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0051738: xanthophyll binding	0.00E+00
3	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
4	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0045550: geranylgeranyl reductase activity	0.00E+00
7	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
8	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
9	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
10	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
11	GO:0004802: transketolase activity	0.00E+00
12	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.30E-07
14	GO:0016168: chlorophyll binding	8.91E-06
15	GO:0051537: 2 iron, 2 sulfur cluster binding	1.87E-05
16	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	5.14E-05
17	GO:0009055: electron carrier activity	5.27E-05
18	GO:0016984: ribulose-bisphosphate carboxylase activity	7.49E-05
19	GO:0004618: phosphoglycerate kinase activity	5.16E-04
20	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	5.16E-04
21	GO:0015088: copper uptake transmembrane transporter activity	5.16E-04
22	GO:0015140: malate transmembrane transporter activity	5.16E-04
23	GO:0008883: glutamyl-tRNA reductase activity	5.16E-04
24	GO:0051536: iron-sulfur cluster binding	7.99E-04
25	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.20E-03
26	GO:0045430: chalcone isomerase activity	1.20E-03
27	GO:0004605: phosphatidate cytidylyltransferase activity	1.20E-03
28	GO:0051920: peroxiredoxin activity	1.20E-03
29	GO:0016872: intramolecular lyase activity	2.00E-03
30	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	2.00E-03
31	GO:0004713: protein tyrosine kinase activity	2.02E-03
32	GO:0016209: antioxidant activity	2.91E-03
33	GO:0071949: FAD binding	2.91E-03
34	GO:0004332: fructose-bisphosphate aldolase activity	2.91E-03
35	GO:0004747: ribokinase activity	2.91E-03
36	GO:0030234: enzyme regulator activity	3.99E-03
37	GO:0005381: iron ion transmembrane transporter activity	3.99E-03
38	GO:0004470: malic enzyme activity	3.99E-03
39	GO:0004017: adenylate kinase activity	3.99E-03
40	GO:0051287: NAD binding	4.61E-03
41	GO:0004356: glutamate-ammonia ligase activity	5.14E-03
42	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.35E-03
43	GO:0019201: nucleotide kinase activity	6.41E-03
44	GO:0019205: nucleobase-containing compound kinase activity	6.41E-03
45	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	6.41E-03
46	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	6.41E-03
47	GO:0004427: inorganic diphosphatase activity	9.24E-03
48	GO:0042578: phosphoric ester hydrolase activity	9.24E-03
49	GO:0008266: poly(U) RNA binding	9.24E-03
50	GO:0016776: phosphotransferase activity, phosphate group as acceptor	9.24E-03
51	GO:0046914: transition metal ion binding	1.24E-02
52	GO:0050661: NADP binding	1.35E-02
53	GO:0048037: cofactor binding	1.42E-02
54	GO:0043531: ADP binding	1.42E-02
55	GO:0003690: double-stranded DNA binding	1.42E-02
56	GO:0005215: transporter activity	1.52E-02
57	GO:0042803: protein homodimerization activity	1.78E-02
58	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.98E-02
59	GO:0008080: N-acetyltransferase activity	2.40E-02
60	GO:0030145: manganese ion binding	2.40E-02
61	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	3.30E-02
62	GO:0015078: hydrogen ion transmembrane transporter activity	3.55E-02
63	GO:0016597: amino acid binding	4.07E-02
64	GO:0051539: 4 iron, 4 sulfur cluster binding	4.60E-02
65	GO:0042802: identical protein binding	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0030093: chloroplast photosystem I	0.00E+00
2	GO:0009507: chloroplast	9.01E-30
3	GO:0009535: chloroplast thylakoid membrane	1.39E-21
4	GO:0009941: chloroplast envelope	1.86E-18
5	GO:0009579: thylakoid	4.67E-18
6	GO:0009543: chloroplast thylakoid lumen	5.77E-12
7	GO:0009534: chloroplast thylakoid	6.57E-11
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.49E-11
9	GO:0009570: chloroplast stroma	7.57E-11
10	GO:0031977: thylakoid lumen	9.72E-09
11	GO:0009522: photosystem I	4.41E-07
12	GO:0048046: apoplast	7.63E-06
13	GO:0010287: plastoglobule	2.53E-05
14	GO:0009523: photosystem II	5.90E-05
15	GO:0010319: stromule	1.07E-04
16	GO:0009508: plastid chromosome	1.34E-04
17	GO:0019898: extrinsic component of membrane	2.13E-04
18	GO:0009654: photosystem II oxygen evolving complex	3.11E-04
19	GO:0042406: extrinsic component of endoplasmic reticulum membrane	5.16E-04
20	GO:0009517: PSII associated light-harvesting complex II	5.16E-04
21	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	5.16E-04
22	GO:0009295: nucleoid	1.08E-03
23	GO:0009533: chloroplast stromal thylakoid	1.20E-03
24	GO:0009538: photosystem I reaction center	2.91E-03
25	GO:0016020: membrane	3.14E-03
26	GO:0009706: chloroplast inner membrane	4.47E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	6.41E-03
28	GO:0042651: thylakoid membrane	1.78E-02
29	GO:0009536: plastid	2.12E-02