Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G164325

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010424: DNA methylation on cytosine within a CG sequence0.00E+00
2GO:0031508: pericentric heterochromatin assembly0.00E+00
3GO:0006268: DNA unwinding involved in DNA replication0.00E+00
4GO:0032776: DNA methylation on cytosine0.00E+00
5GO:0006334: nucleosome assembly2.03E-11
6GO:0006260: DNA replication1.52E-10
7GO:0010069: zygote asymmetric cytokinesis in embryo sac4.21E-07
8GO:0032508: DNA duplex unwinding1.25E-06
9GO:0090116: C-5 methylation of cytosine3.87E-06
10GO:0006270: DNA replication initiation1.82E-05
11GO:0006306: DNA methylation5.92E-05
12GO:0008283: cell proliferation8.50E-05
13GO:0042276: error-prone translesion synthesis8.95E-05
14GO:0010216: maintenance of DNA methylation8.95E-05
15GO:0010425: DNA methylation on cytosine within a CNG sequence8.95E-05
16GO:0009294: DNA mediated transformation1.45E-04
17GO:0030036: actin cytoskeleton organization1.98E-04
18GO:0009186: deoxyribonucleoside diphosphate metabolic process2.26E-04
19GO:0045814: negative regulation of gene expression, epigenetic2.26E-04
20GO:0006310: DNA recombination2.28E-04
21GO:0006275: regulation of DNA replication4.95E-04
22GO:0006281: DNA repair5.60E-04
23GO:0051726: regulation of cell cycle7.50E-04
24GO:0010082: regulation of root meristem growth8.01E-04
25GO:0051567: histone H3-K9 methylation9.97E-04
26GO:0006349: regulation of gene expression by genetic imprinting1.29E-03
27GO:0006325: chromatin organization1.29E-03
28GO:0006084: acetyl-CoA metabolic process1.29E-03
29GO:0090305: nucleic acid phosphodiester bond hydrolysis1.84E-03
30GO:0006342: chromatin silencing1.84E-03
31GO:0042127: regulation of cell proliferation2.12E-03
32GO:0012501: programmed cell death2.41E-03
33GO:0009165: nucleotide biosynthetic process3.07E-03
34GO:0044267: cellular protein metabolic process4.99E-03
35GO:0009910: negative regulation of flower development5.83E-03
36GO:0010224: response to UV-B5.83E-03
37GO:0009414: response to water deprivation8.01E-03
38GO:0030163: protein catabolic process8.67E-03
39GO:0007049: cell cycle9.19E-03
40GO:0009790: embryo development1.08E-02
41GO:0009793: embryo development ending in seed dormancy1.14E-02
42GO:0000911: cytokinesis by cell plate formation1.25E-02
43GO:0010043: response to zinc ion1.49E-02
44GO:0051301: cell division1.67E-02
45GO:0010228: vegetative to reproductive phase transition of meristem1.74E-02
46GO:0048364: root development1.94E-02
47GO:0007275: multicellular organism development2.01E-02
48GO:0009909: regulation of flower development2.74E-02
49GO:0007264: small GTPase mediated signal transduction4.09E-02
RankGO TermAdjusted P value
1GO:0003677: DNA binding1.07E-11
2GO:0046982: protein heterodimerization activity9.36E-11
3GO:0003678: DNA helicase activity6.33E-07
4GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.87E-06
5GO:0008327: methyl-CpG binding8.95E-05
6GO:0010428: methyl-CpNpG binding8.95E-05
7GO:0010429: methyl-CpNpN binding8.95E-05
8GO:0030337: DNA polymerase processivity factor activity8.95E-05
9GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity2.26E-04
10GO:0003688: DNA replication origin binding2.26E-04
11GO:0010385: double-stranded methylated DNA binding3.93E-04
12GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor3.93E-04
13GO:0003682: chromatin binding5.11E-04
14GO:0003779: actin binding1.28E-03
15GO:0005089: Rho guanyl-nucleotide exchange factor activity1.29E-03
16GO:0046914: transition metal ion binding2.41E-03
17GO:0004518: nuclease activity2.41E-03
18GO:0004519: endonuclease activity3.07E-03
19GO:0042393: histone binding6.74E-03
20GO:0017111: nucleoside-triphosphatase activity9.27E-03
21GO:0045735: nutrient reservoir activity1.02E-02
22GO:0008168: methyltransferase activity1.65E-02
23GO:0051082: unfolded protein binding3.73E-02
RankGO TermAdjusted P value
1GO:0033095: aleurone grain0.00E+00
2GO:0000786: nucleosome1.19E-11
3GO:0005694: chromosome4.79E-11
4GO:0005634: nucleus2.42E-09
5GO:0042555: MCM complex2.77E-07
6GO:0010369: chromocenter8.95E-05
7GO:0043626: PCNA complex8.95E-05
8GO:0042644: chloroplast nucleoid8.95E-05
9GO:0000347: THO complex8.95E-05
10GO:0005971: ribonucleoside-diphosphate reductase complex3.93E-04
11GO:0005730: nucleolus2.09E-03
12GO:0009506: plasmodesma2.71E-03
13GO:0005774: vacuolar membrane3.96E-03
14GO:0009579: thylakoid1.71E-02
15GO:0000502: proteasome complex2.29E-02