co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G156516

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
2	GO:1901259: chloroplast rRNA processing	0.00E+00
3	GO:0010028: xanthophyll cycle	0.00E+00
4	GO:0035436: triose phosphate transmembrane transport	0.00E+00
5	GO:0090342: regulation of cell aging	0.00E+00
6	GO:0015714: phosphoenolpyruvate transport	0.00E+00
7	GO:0071486: cellular response to high light intensity	0.00E+00
8	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
9	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
10	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
11	GO:0043043: peptide biosynthetic process	0.00E+00
12	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
13	GO:0042821: pyridoxal biosynthetic process	0.00E+00
14	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
15	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.30E-22
16	GO:0010027: thylakoid membrane organization	7.03E-20
17	GO:0010207: photosystem II assembly	9.07E-12
18	GO:0015995: chlorophyll biosynthetic process	3.64E-11
19	GO:0009902: chloroplast relocation	2.78E-10
20	GO:0042793: transcription from plastid promoter	4.03E-09
21	GO:0006364: rRNA processing	5.88E-09
22	GO:0006636: unsaturated fatty acid biosynthetic process	7.02E-09
23	GO:0009773: photosynthetic electron transport in photosystem I	6.47E-08
24	GO:0006098: pentose-phosphate shunt	8.39E-08
25	GO:0016226: iron-sulfur cluster assembly	8.39E-08
26	GO:0045036: protein targeting to chloroplast	1.41E-07
27	GO:0009106: lipoate metabolic process	2.18E-07
28	GO:0006766: vitamin metabolic process	2.18E-07
29	GO:0009108: coenzyme biosynthetic process	2.18E-07
30	GO:0016117: carotenoid biosynthetic process	9.53E-07
31	GO:0019748: secondary metabolic process	4.21E-06
32	GO:0000096: sulfur amino acid metabolic process	4.21E-06
33	GO:0006546: glycine catabolic process	4.29E-06
34	GO:0006655: phosphatidylglycerol biosynthetic process	9.33E-06
35	GO:0009073: aromatic amino acid family biosynthetic process	1.55E-05
36	GO:0032544: plastid translation	2.01E-05
37	GO:0042372: phylloquinone biosynthetic process	2.01E-05
38	GO:0009072: aromatic amino acid family metabolic process	4.66E-05
39	GO:0009695: jasmonic acid biosynthetic process	6.33E-05
40	GO:0006733: oxidoreduction coenzyme metabolic process	6.96E-05
41	GO:0006354: DNA-templated transcription, elongation	9.72E-05
42	GO:0043085: positive regulation of catalytic activity	1.48E-04
43	GO:0009117: nucleotide metabolic process	1.51E-04
44	GO:0045038: protein import into chloroplast thylakoid membrane	1.51E-04
45	GO:0019216: regulation of lipid metabolic process	1.51E-04
46	GO:0015979: photosynthesis	1.58E-04
47	GO:0006412: translation	2.46E-04
48	GO:0006569: tryptophan catabolic process	2.67E-04
49	GO:0009772: photosynthetic electron transport in photosystem II	2.67E-04
50	GO:0030154: cell differentiation	4.15E-04
51	GO:0010103: stomatal complex morphogenesis	5.84E-04
52	GO:0034660: ncRNA metabolic process	5.91E-04
53	GO:0035304: regulation of protein dephosphorylation	6.83E-04
54	GO:0009069: serine family amino acid metabolic process	7.92E-04
55	GO:0019253: reductive pentose-phosphate cycle	7.92E-04
56	GO:0009443: pyridoxal 5'-phosphate salvage	7.92E-04
57	GO:0008361: regulation of cell size	7.92E-04
58	GO:0006434: seryl-tRNA aminoacylation	7.92E-04
59	GO:0016050: vesicle organization	7.92E-04
60	GO:0009684: indoleacetic acid biosynthetic process	1.33E-03
61	GO:0009407: toxin catabolic process	1.33E-03
62	GO:0016556: mRNA modification	1.64E-03
63	GO:0009697: salicylic acid biosynthetic process	1.64E-03
64	GO:0044272: sulfur compound biosynthetic process	1.81E-03
65	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.81E-03
66	GO:0010236: plastoquinone biosynthetic process	1.81E-03
67	GO:0009688: abscisic acid biosynthetic process	1.81E-03
68	GO:0048653: anther development	1.81E-03
69	GO:0045893: positive regulation of transcription, DNA-templated	1.83E-03
70	GO:0019761: glucosinolate biosynthetic process	2.22E-03
71	GO:0031408: oxylipin biosynthetic process	2.74E-03
72	GO:0034599: cellular response to oxidative stress	3.01E-03
73	GO:0007186: G-protein coupled receptor signaling pathway	3.01E-03
74	GO:0010731: protein glutathionylation	3.01E-03
75	GO:0000023: maltose metabolic process	3.16E-03
76	GO:0009658: chloroplast organization	3.44E-03
77	GO:0006414: translational elongation	4.04E-03
78	GO:0006631: fatty acid metabolic process	4.23E-03
79	GO:0019684: photosynthesis, light reaction	4.23E-03
80	GO:0051205: protein insertion into membrane	4.47E-03
81	GO:0009595: detection of biotic stimulus	4.47E-03
82	GO:0045037: protein import into chloroplast stroma	4.47E-03
83	GO:0007389: pattern specification process	4.47E-03
84	GO:0071704: organic substance metabolic process	4.47E-03
85	GO:0008652: cellular amino acid biosynthetic process	5.04E-03
86	GO:0046777: protein autophosphorylation	6.04E-03
87	GO:0009813: flavonoid biosynthetic process	6.07E-03
88	GO:0043900: regulation of multi-organism process	6.07E-03
89	GO:0015994: chlorophyll metabolic process	6.07E-03
90	GO:0070084: protein initiator methionine removal	6.07E-03
91	GO:0010189: vitamin E biosynthetic process	6.07E-03
92	GO:0006796: phosphate-containing compound metabolic process	6.07E-03
93	GO:0060416: response to growth hormone	6.07E-03
94	GO:0009965: leaf morphogenesis	6.62E-03
95	GO:0009913: epidermal cell differentiation	7.87E-03
96	GO:0009306: protein secretion	7.87E-03
97	GO:0048229: gametophyte development	7.87E-03
98	GO:0007005: mitochondrion organization	7.87E-03
99	GO:0019538: protein metabolic process	9.83E-03
100	GO:0055072: iron ion homeostasis	9.83E-03
101	GO:0009704: de-etiolation	9.83E-03
102	GO:0009987: cellular process	9.83E-03
103	GO:0009814: defense response, incompatible interaction	9.83E-03
104	GO:0010583: response to cyclopentenone	9.83E-03
105	GO:0006801: superoxide metabolic process	9.83E-03
106	GO:0009926: auxin polar transport	9.83E-03
107	GO:0009735: response to cytokinin	1.17E-02
108	GO:0010310: regulation of hydrogen peroxide metabolic process	1.19E-02
109	GO:0006399: tRNA metabolic process	1.19E-02
110	GO:0030245: cellulose catabolic process	1.19E-02
111	GO:0019252: starch biosynthetic process	1.31E-02
112	GO:0009637: response to blue light	1.37E-02
113	GO:0019344: cysteine biosynthetic process	1.37E-02
114	GO:0040007: growth	1.42E-02
115	GO:0010015: root morphogenesis	1.42E-02
116	GO:0015977: carbon fixation	1.42E-02
117	GO:0010114: response to red light	1.59E-02
118	GO:0000302: response to reactive oxygen species	1.66E-02
119	GO:0009832: plant-type cell wall biogenesis	1.66E-02
120	GO:0010218: response to far red light	1.83E-02
121	GO:0008380: RNA splicing	1.91E-02
122	GO:0048527: lateral root development	1.91E-02
123	GO:0009567: double fertilization forming a zygote and endosperm	1.91E-02
124	GO:0048481: plant ovule development	1.95E-02
125	GO:0006418: tRNA aminoacylation for protein translation	2.08E-02
126	GO:0009793: embryo development ending in seed dormancy	2.11E-02
127	GO:0010039: response to iron ion	2.18E-02
128	GO:0009765: photosynthesis, light harvesting	2.18E-02
129	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.18E-02
130	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.18E-02
131	GO:0009767: photosynthetic electron transport chain	2.75E-02
132	GO:0051607: defense response to virus	2.75E-02
133	GO:0010228: vegetative to reproductive phase transition of meristem	2.95E-02
134	GO:0015996: chlorophyll catabolic process	3.06E-02
135	GO:0010075: regulation of meristem growth	3.06E-02
136	GO:0042545: cell wall modification	3.37E-02
137	GO:0009657: plastid organization	3.70E-02
138	GO:0009749: response to glucose	3.70E-02
139	GO:0009664: plant-type cell wall organization	4.04E-02
140	GO:0010155: regulation of proton transport	4.04E-02
141	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	4.04E-02
142	GO:0006417: regulation of translation	4.04E-02
143	GO:0010267: production of ta-siRNAs involved in RNA interference	4.04E-02
144	GO:0018298: protein-chromophore linkage	4.04E-02
145	GO:0035196: production of miRNAs involved in gene silencing by miRNA	4.04E-02
146	GO:0042742: defense response to bacterium	4.17E-02
147	GO:0010200: response to chitin	4.38E-02
148	GO:0006612: protein targeting to membrane	4.38E-02
149	GO:0010363: regulation of plant-type hypersensitive response	4.74E-02
150	GO:0010224: response to UV-B	4.74E-02
151	GO:0010182: sugar mediated signaling pathway	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
3	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
4	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
7	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
8	GO:0005504: fatty acid binding	0.00E+00
9	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
10	GO:0003735: structural constituent of ribosome	3.50E-04
11	GO:0008235: metalloexopeptidase activity	4.13E-04
12	GO:0045174: glutathione dehydrogenase (ascorbate) activity	7.92E-04
13	GO:0004828: serine-tRNA ligase activity	7.92E-04
14	GO:0070402: NADPH binding	7.92E-04
15	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.33E-03
16	GO:0004177: aminopeptidase activity	1.33E-03
17	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	1.81E-03
18	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.81E-03
19	GO:0045430: chalcone isomerase activity	1.81E-03
20	GO:0003746: translation elongation factor activity	2.65E-03
21	GO:0033897: ribonuclease T2 activity	3.01E-03
22	GO:0016872: intramolecular lyase activity	3.01E-03
23	GO:0004765: shikimate kinase activity	4.47E-03
24	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.47E-03
25	GO:0016984: ribulose-bisphosphate carboxylase activity	4.47E-03
26	GO:0070569: uridylyltransferase activity	4.47E-03
27	GO:0004659: prenyltransferase activity	4.47E-03
28	GO:0016868: intramolecular transferase activity, phosphotransferases	6.07E-03
29	GO:0070006: metalloaminopeptidase activity	6.07E-03
30	GO:0008810: cellulase activity	9.83E-03
31	GO:0004784: superoxide dismutase activity	1.19E-02
32	GO:0043022: ribosome binding	1.19E-02
33	GO:0004427: inorganic diphosphatase activity	1.42E-02
34	GO:0000049: tRNA binding	1.66E-02
35	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.66E-02
36	GO:0003690: double-stranded DNA binding	2.18E-02
37	GO:0004812: aminoacyl-tRNA ligase activity	2.35E-02
38	GO:0005216: ion channel activity	3.37E-02
39	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.70E-02
40	GO:0030145: manganese ion binding	3.70E-02
41	GO:0016168: chlorophyll binding	4.04E-02

Rank	GO Term	Adjusted P value
1	GO:0031361: integral component of thylakoid membrane	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	3.62E-34
4	GO:0009941: chloroplast envelope	1.32E-22
5	GO:0009570: chloroplast stroma	2.63E-22
6	GO:0009535: chloroplast thylakoid membrane	6.29E-15
7	GO:0009579: thylakoid	8.86E-09
8	GO:0009295: nucleoid	8.24E-08
9	GO:0005840: ribosome	4.69E-06
10	GO:0009534: chloroplast thylakoid	8.42E-06
11	GO:0009543: chloroplast thylakoid lumen	9.33E-06
12	GO:0009508: plastid chromosome	2.67E-04
13	GO:0031977: thylakoid lumen	3.63E-04
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.13E-04
15	GO:0009528: plastid inner membrane	7.92E-04
16	GO:0000311: plastid large ribosomal subunit	7.92E-04
17	GO:0009527: plastid outer membrane	7.92E-04
18	GO:0030093: chloroplast photosystem I	7.92E-04
19	GO:0044445: cytosolic part	7.92E-04
20	GO:0030529: intracellular ribonucleoprotein complex	8.75E-04
21	GO:0055028: cortical microtubule	3.01E-03
22	GO:0009538: photosystem I reaction center	4.47E-03
23	GO:0009522: photosystem I	6.04E-03
24	GO:0019013: viral nucleocapsid	6.04E-03
25	GO:0005622: intracellular	1.07E-02
26	GO:0009523: photosystem II	1.17E-02
27	GO:0009532: plastid stroma	1.19E-02
28	GO:0015934: large ribosomal subunit	1.59E-02
29	GO:0009536: plastid	1.72E-02
30	GO:0042651: thylakoid membrane	2.75E-02