Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G149534

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090342: regulation of cell aging0.00E+00
2GO:0010270: photosystem II oxygen evolving complex assembly0.00E+00
3GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis0.00E+00
4GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
5GO:1901259: chloroplast rRNA processing0.00E+00
6GO:0010027: thylakoid membrane organization7.01E-13
7GO:0016226: iron-sulfur cluster assembly7.03E-09
8GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway8.21E-09
9GO:0009073: aromatic amino acid family biosynthetic process1.64E-05
10GO:0009658: chloroplast organization3.72E-05
11GO:0006434: seryl-tRNA aminoacylation7.56E-05
12GO:0016050: vesicle organization7.56E-05
13GO:0009069: serine family amino acid metabolic process7.56E-05
14GO:0045036: protein targeting to chloroplast7.79E-05
15GO:0006655: phosphatidylglycerol biosynthetic process9.44E-05
16GO:0042793: transcription from plastid promoter9.44E-05
17GO:0010207: photosystem II assembly1.04E-04
18GO:0006636: unsaturated fatty acid biosynthetic process1.12E-04
19GO:0030154: cell differentiation1.54E-04
20GO:0006098: pentose-phosphate shunt2.59E-04
21GO:0006733: oxidoreduction coenzyme metabolic process3.37E-04
22GO:0009902: chloroplast relocation3.91E-04
23GO:0045038: protein import into chloroplast thylakoid membrane5.02E-04
24GO:0051205: protein insertion into membrane5.02E-04
25GO:0009117: nucleotide metabolic process5.02E-04
26GO:0016117: carotenoid biosynthetic process5.51E-04
27GO:0006364: rRNA processing5.64E-04
28GO:0009308: amine metabolic process6.86E-04
29GO:0000096: sulfur amino acid metabolic process6.86E-04
30GO:0006569: tryptophan catabolic process6.86E-04
31GO:0060416: response to growth hormone6.86E-04
32GO:0019748: secondary metabolic process6.86E-04
33GO:0048481: plant ovule development7.91E-04
34GO:0006418: tRNA aminoacylation for protein translation8.44E-04
35GO:0007005: mitochondrion organization8.89E-04
36GO:0006414: translational elongation9.57E-04
37GO:0009814: defense response, incompatible interaction1.11E-03
38GO:0009108: coenzyme biosynthetic process1.11E-03
39GO:0034660: ncRNA metabolic process1.11E-03
40GO:0009106: lipoate metabolic process1.11E-03
41GO:0009704: de-etiolation1.11E-03
42GO:0006766: vitamin metabolic process1.11E-03
43GO:0015995: chlorophyll biosynthetic process1.14E-03
44GO:0010228: vegetative to reproductive phase transition of meristem1.21E-03
45GO:0006399: tRNA metabolic process1.34E-03
46GO:0009965: leaf morphogenesis1.41E-03
47GO:0009684: indoleacetic acid biosynthetic process1.84E-03
48GO:0045893: positive regulation of transcription, DNA-templated1.86E-03
49GO:0048527: lateral root development2.09E-03
50GO:0009697: salicylic acid biosynthetic process2.09E-03
51GO:0006354: DNA-templated transcription, elongation2.09E-03
52GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.35E-03
53GO:0006546: glycine catabolic process2.35E-03
54GO:0042545: cell wall modification3.59E-03
55GO:0006184: obsolete GTP catabolic process3.85E-03
56GO:0019684: photosynthesis, light reaction3.93E-03
57GO:0009657: plastid organization3.93E-03
58GO:0010103: stomatal complex morphogenesis4.65E-03
59GO:0035304: regulation of protein dephosphorylation5.01E-03
60GO:0009773: photosynthetic electron transport in photosystem I5.01E-03
61GO:0046777: protein autophosphorylation5.01E-03
62GO:0009695: jasmonic acid biosynthetic process5.38E-03
63GO:0009735: response to cytokinin7.87E-03
64GO:0019344: cysteine biosynthetic process8.77E-03
65GO:0009793: embryo development ending in seed dormancy9.07E-03
66GO:0019761: glucosinolate biosynthetic process9.23E-03
67GO:0008652: cellular amino acid biosynthetic process1.43E-02
68GO:0043085: positive regulation of catalytic activity1.60E-02
69GO:0006200: obsolete ATP catabolic process1.60E-02
70GO:0080167: response to karrikin2.97E-02
71GO:0015979: photosynthesis3.04E-02
RankGO TermAdjusted P value
1GO:0070180: large ribosomal subunit rRNA binding0.00E+00
2GO:0004828: serine-tRNA ligase activity7.56E-05
3GO:0004831: tyrosine-tRNA ligase activity7.56E-05
4GO:0004765: shikimate kinase activity5.02E-04
5GO:0003746: translation elongation factor activity6.88E-04
6GO:0004812: aminoacyl-tRNA ligase activity9.57E-04
7GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.84E-03
8GO:0048038: quinone binding3.26E-03
9GO:0031072: heat shock protein binding5.38E-03
10GO:0004364: glutathione transferase activity1.07E-02
11GO:0003924: GTPase activity1.23E-02
12GO:0008026: ATP-dependent helicase activity1.38E-02
13GO:0005507: copper ion binding1.85E-02
14GO:0016887: ATPase activity2.28E-02
15GO:0004386: helicase activity2.48E-02
16GO:0005525: GTP binding2.61E-02
17GO:0051082: unfolded protein binding3.19E-02
18GO:0004497: monooxygenase activity3.57E-02
19GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.05E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast4.99E-11
2GO:0009570: chloroplast stroma6.84E-09
3GO:0009535: chloroplast thylakoid membrane4.56E-07
4GO:0009295: nucleoid6.05E-07
5GO:0009941: chloroplast envelope1.77E-05
6GO:0009508: plastid chromosome6.86E-04
7GO:0009534: chloroplast thylakoid1.14E-03
8GO:0009543: chloroplast thylakoid lumen2.94E-03
9GO:0019013: viral nucleocapsid5.01E-03
10GO:0015934: large ribosomal subunit9.71E-03
11GO:0031977: thylakoid lumen1.02E-02
12GO:0048046: apoplast2.65E-02