co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G143646

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048564: photosystem I assembly	0.00E+00
2	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
3	GO:0043953: protein transport by the Tat complex	0.00E+00
4	GO:0010239: chloroplast mRNA processing	0.00E+00
5	GO:0046506: sulfolipid biosynthetic process	0.00E+00
6	GO:1901259: chloroplast rRNA processing	0.00E+00
7	GO:0090342: regulation of cell aging	0.00E+00
8	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
9	GO:0042780: tRNA 3'-end processing	0.00E+00
10	GO:1900865: chloroplast RNA modification	0.00E+00
11	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
12	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
13	GO:0043686: co-translational protein modification	0.00E+00
14	GO:0009658: chloroplast organization	3.42E-11
15	GO:0009306: protein secretion	9.08E-10
16	GO:0006399: tRNA metabolic process	1.02E-08
17	GO:0010027: thylakoid membrane organization	9.75E-08
18	GO:0006364: rRNA processing	3.30E-07
19	GO:0006457: protein folding	2.73E-06
20	GO:0045036: protein targeting to chloroplast	1.23E-05
21	GO:1901671: positive regulation of superoxide dismutase activity	2.96E-05
22	GO:0010103: stomatal complex morphogenesis	7.37E-05
23	GO:0006779: porphyrin-containing compound biosynthetic process	2.08E-04
24	GO:0045038: protein import into chloroplast thylakoid membrane	2.14E-04
25	GO:0006782: protoporphyrinogen IX biosynthetic process	2.14E-04
26	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.58E-04
27	GO:0006655: phosphatidylglycerol biosynthetic process	3.46E-04
28	GO:0010207: photosystem II assembly	4.22E-04
29	GO:0000023: maltose metabolic process	7.59E-04
30	GO:0019252: starch biosynthetic process	8.95E-04
31	GO:0006429: leucyl-tRNA aminoacylation	9.82E-04
32	GO:0006591: ornithine metabolic process	9.82E-04
33	GO:0009959: negative gravitropism	9.82E-04
34	GO:0045087: innate immune response	1.43E-03
35	GO:0009407: toxin catabolic process	1.80E-03
36	GO:0016556: mRNA modification	2.20E-03
37	GO:0030308: negative regulation of cell growth	2.22E-03
38	GO:0009688: abscisic acid biosynthetic process	2.22E-03
39	GO:0009642: response to light intensity	2.22E-03
40	GO:0005987: sucrose catabolic process	2.22E-03
41	GO:0009073: aromatic amino acid family biosynthetic process	2.69E-03
42	GO:0045893: positive regulation of transcription, DNA-templated	2.91E-03
43	GO:0016075: rRNA catabolic process	3.74E-03
44	GO:0043067: regulation of programmed cell death	3.74E-03
45	GO:0009231: riboflavin biosynthetic process	3.74E-03
46	GO:0009247: glycolipid biosynthetic process	3.74E-03
47	GO:0019760: glucosinolate metabolic process	3.74E-03
48	GO:0006733: oxidoreduction coenzyme metabolic process	3.74E-03
49	GO:0010038: response to metal ion	3.74E-03
50	GO:0051085: chaperone mediated protein folding requiring cofactor	3.74E-03
51	GO:0010731: protein glutathionylation	3.74E-03
52	GO:0042793: transcription from plastid promoter	3.75E-03
53	GO:0051607: defense response to virus	3.75E-03
54	GO:0016226: iron-sulfur cluster assembly	3.97E-03
55	GO:0006165: nucleoside diphosphate phosphorylation	5.52E-03
56	GO:0006228: UTP biosynthetic process	5.52E-03
57	GO:0010304: PSII associated light-harvesting complex II catabolic process	5.52E-03
58	GO:0051205: protein insertion into membrane	5.52E-03
59	GO:0009117: nucleotide metabolic process	5.52E-03
60	GO:0019375: galactolipid biosynthetic process	5.52E-03
61	GO:0006183: GTP biosynthetic process	5.52E-03
62	GO:0006241: CTP biosynthetic process	5.52E-03
63	GO:0000373: Group II intron splicing	5.52E-03
64	GO:0042026: protein refolding	5.52E-03
65	GO:0071704: organic substance metabolic process	5.52E-03
66	GO:0019684: photosynthesis, light reaction	5.76E-03
67	GO:0006098: pentose-phosphate shunt	6.13E-03
68	GO:0009409: response to cold	6.30E-03
69	GO:0010267: production of ta-siRNAs involved in RNA interference	6.53E-03
70	GO:0035196: production of miRNAs involved in gene silencing by miRNA	6.53E-03
71	GO:0015995: chlorophyll biosynthetic process	7.50E-03
72	GO:0019748: secondary metabolic process	7.54E-03
73	GO:0010468: regulation of gene expression	7.54E-03
74	GO:0009308: amine metabolic process	7.54E-03
75	GO:0043085: positive regulation of catalytic activity	9.21E-03
76	GO:0006200: obsolete ATP catabolic process	9.21E-03
77	GO:0006184: obsolete GTP catabolic process	9.26E-03
78	GO:0000105: histidine biosynthetic process	9.77E-03
79	GO:0006749: glutathione metabolic process	9.77E-03
80	GO:0048229: gametophyte development	9.77E-03
81	GO:0045454: cell redox homeostasis	1.12E-02
82	GO:0034660: ncRNA metabolic process	1.22E-02
83	GO:0009106: lipoate metabolic process	1.22E-02
84	GO:0006766: vitamin metabolic process	1.22E-02
85	GO:0009411: response to UV	1.22E-02
86	GO:0009814: defense response, incompatible interaction	1.22E-02
87	GO:0009108: coenzyme biosynthetic process	1.22E-02
88	GO:0010583: response to cyclopentenone	1.22E-02
89	GO:0006189: 'de novo' IMP biosynthetic process	1.22E-02
90	GO:0009902: chloroplast relocation	1.35E-02
91	GO:0051604: protein maturation	1.48E-02
92	GO:0006396: RNA processing	1.49E-02
93	GO:0009735: response to cytokinin	1.60E-02
94	GO:0006662: glycerol ether metabolic process	1.73E-02
95	GO:0009585: red, far-red light phototransduction	1.76E-02
96	GO:0006221: pyrimidine nucleotide biosynthetic process	1.76E-02
97	GO:0009416: response to light stimulus	1.84E-02
98	GO:0019344: cysteine biosynthetic process	1.87E-02
99	GO:0016117: carotenoid biosynthetic process	1.87E-02
100	GO:0008380: RNA splicing	2.38E-02
101	GO:0009567: double fertilization forming a zygote and endosperm	2.38E-02
102	GO:0006546: glycine catabolic process	2.71E-02
103	GO:0009723: response to ethylene	3.01E-02
104	GO:0016042: lipid catabolic process	3.07E-02
105	GO:0015996: chlorophyll catabolic process	3.81E-02
106	GO:0005982: starch metabolic process	3.81E-02
107	GO:0008299: isoprenoid biosynthetic process	3.81E-02
108	GO:0006636: unsaturated fatty acid biosynthetic process	3.81E-02
109	GO:0009630: gravitropism	4.20E-02
110	GO:0042545: cell wall modification	4.20E-02
111	GO:0009657: plastid organization	4.61E-02
112	GO:0030154: cell differentiation	4.61E-02
113	GO:0009965: leaf morphogenesis	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
2	GO:0042586: peptide deformylase activity	0.00E+00
3	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
4	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
5	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
6	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
7	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
8	GO:0003919: FMN adenylyltransferase activity	0.00E+00
9	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
10	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
11	GO:0008565: protein transporter activity	6.35E-06
12	GO:0004853: uroporphyrinogen decarboxylase activity	2.96E-05
13	GO:0051082: unfolded protein binding	6.04E-05
14	GO:0016817: hydrolase activity, acting on acid anhydrides	5.70E-04
15	GO:0004525: ribonuclease III activity	8.14E-04
16	GO:0004585: ornithine carbamoyltransferase activity	9.82E-04
17	GO:0008146: sulfotransferase activity	9.82E-04
18	GO:0033862: UMP kinase activity	9.82E-04
19	GO:0004823: leucine-tRNA ligase activity	9.82E-04
20	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.82E-04
21	GO:0004362: glutathione-disulfide reductase activity	9.82E-04
22	GO:0008266: poly(U) RNA binding	1.43E-03
23	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.80E-03
24	GO:0046914: transition metal ion binding	2.20E-03
25	GO:0005496: steroid binding	2.22E-03
26	GO:0016630: protochlorophyllide reductase activity	2.22E-03
27	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.22E-03
28	GO:0047134: protein-disulfide reductase activity	2.22E-03
29	GO:0016743: carboxyl- or carbamoyltransferase activity	3.74E-03
30	GO:0000774: adenyl-nucleotide exchange factor activity	3.74E-03
31	GO:0003959: NADPH dehydrogenase activity	3.74E-03
32	GO:0009041: uridylate kinase activity	3.74E-03
33	GO:0016831: carboxy-lyase activity	5.03E-03
34	GO:0004765: shikimate kinase activity	5.52E-03
35	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	5.52E-03
36	GO:0004550: nucleoside diphosphate kinase activity	5.52E-03
37	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	5.52E-03
38	GO:0070569: uridylyltransferase activity	5.52E-03
39	GO:0016868: intramolecular transferase activity, phosphotransferases	7.54E-03
40	GO:0005525: GTP binding	8.25E-03
41	GO:0031072: heat shock protein binding	9.19E-03
42	GO:0008173: RNA methyltransferase activity	9.77E-03
43	GO:0015035: protein disulfide oxidoreductase activity	1.33E-02
44	GO:0000287: magnesium ion binding	1.45E-02
45	GO:0043022: ribosome binding	1.48E-02
46	GO:0004575: sucrose alpha-glucosidase activity	1.48E-02
47	GO:0051087: chaperone binding	1.48E-02
48	GO:0008047: enzyme activator activity	1.48E-02
49	GO:0016887: ATPase activity	1.75E-02
50	GO:0004252: serine-type endopeptidase activity	1.84E-02
51	GO:0008236: serine-type peptidase activity	1.87E-02
52	GO:0005507: copper ion binding	3.42E-02
53	GO:0048038: quinone binding	3.81E-02
54	GO:0000166: nucleotide binding	3.95E-02
55	GO:0005216: ion channel activity	4.20E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0055035: plastid thylakoid membrane	0.00E+00
4	GO:0009513: etioplast	0.00E+00
5	GO:0031361: integral component of thylakoid membrane	0.00E+00
6	GO:0043235: receptor complex	0.00E+00
7	GO:0009507: chloroplast	1.71E-20
8	GO:0009535: chloroplast thylakoid membrane	1.40E-12
9	GO:0009941: chloroplast envelope	9.50E-12
10	GO:0009570: chloroplast stroma	1.06E-10
11	GO:0009579: thylakoid	4.60E-07
12	GO:0009532: plastid stroma	4.90E-05
13	GO:0009840: chloroplastic endopeptidase Clp complex	3.72E-04
14	GO:0010319: stromule	5.39E-04
15	GO:0009509: chromoplast	9.82E-04
16	GO:0009526: plastid envelope	9.82E-04
17	GO:0044445: cytosolic part	9.82E-04
18	GO:0019013: viral nucleocapsid	1.04E-03
19	GO:0009534: chloroplast thylakoid	1.36E-03
20	GO:0009295: nucleoid	2.65E-03
21	GO:0019898: extrinsic component of membrane	9.77E-03
22	GO:0009706: chloroplast inner membrane	1.12E-02
23	GO:0009654: photosystem II oxygen evolving complex	1.22E-02
24	GO:0009501: amyloplast	1.22E-02
25	GO:0005759: mitochondrial matrix	1.35E-02
26	GO:0031977: thylakoid lumen	2.33E-02
27	GO:0048046: apoplast	2.36E-02
28	GO:0009536: plastid	2.91E-02
29	GO:0009543: chloroplast thylakoid lumen	3.43E-02