co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G141707

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046506: sulfolipid biosynthetic process	0.00E+00
2	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
3	GO:0042780: tRNA 3'-end processing	0.00E+00
4	GO:1900865: chloroplast RNA modification	0.00E+00
5	GO:0010157: response to chlorate	0.00E+00
6	GO:0043686: co-translational protein modification	0.00E+00
7	GO:0090391: granum assembly	0.00E+00
8	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
9	GO:0043953: protein transport by the Tat complex	0.00E+00
10	GO:0010239: chloroplast mRNA processing	0.00E+00
11	GO:0006457: protein folding	8.22E-11
12	GO:0009658: chloroplast organization	2.20E-09
13	GO:0009306: protein secretion	5.61E-06
14	GO:1901671: positive regulation of superoxide dismutase activity	1.39E-05
15	GO:0006364: rRNA processing	3.23E-05
16	GO:0006782: protoporphyrinogen IX biosynthetic process	1.08E-04
17	GO:0010468: regulation of gene expression	1.92E-04
18	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.35E-04
19	GO:0006399: tRNA metabolic process	5.92E-04
20	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	6.44E-04
21	GO:0006429: leucyl-tRNA aminoacylation	6.44E-04
22	GO:0006591: ornithine metabolic process	6.44E-04
23	GO:0032543: mitochondrial translation	6.44E-04
24	GO:0016556: mRNA modification	1.22E-03
25	GO:0006779: porphyrin-containing compound biosynthetic process	1.48E-03
26	GO:0030308: negative regulation of cell growth	1.49E-03
27	GO:0019481: L-alanine catabolic process, by transamination	1.49E-03
28	GO:0036265: RNA (guanine-N7)-methylation	1.49E-03
29	GO:0009642: response to light intensity	1.49E-03
30	GO:0010027: thylakoid membrane organization	1.61E-03
31	GO:0045036: protein targeting to chloroplast	1.76E-03
32	GO:0006655: phosphatidylglycerol biosynthetic process	2.06E-03
33	GO:0051607: defense response to virus	2.06E-03
34	GO:0008299: isoprenoid biosynthetic process	2.38E-03
35	GO:0009247: glycolipid biosynthetic process	2.46E-03
36	GO:0019760: glucosinolate metabolic process	2.46E-03
37	GO:0006450: regulation of translational fidelity	2.46E-03
38	GO:0006733: oxidoreduction coenzyme metabolic process	2.46E-03
39	GO:0051085: chaperone mediated protein folding requiring cofactor	2.46E-03
40	GO:0016075: rRNA catabolic process	2.46E-03
41	GO:0009231: riboflavin biosynthetic process	2.46E-03
42	GO:0019684: photosynthesis, light reaction	3.13E-03
43	GO:0010267: production of ta-siRNAs involved in RNA interference	3.57E-03
44	GO:0035196: production of miRNAs involved in gene silencing by miRNA	3.57E-03
45	GO:0009117: nucleotide metabolic process	3.63E-03
46	GO:0045037: protein import into chloroplast stroma	3.63E-03
47	GO:0019375: galactolipid biosynthetic process	3.63E-03
48	GO:0045038: protein import into chloroplast thylakoid membrane	3.63E-03
49	GO:0000373: Group II intron splicing	3.63E-03
50	GO:0042026: protein refolding	3.63E-03
51	GO:0009627: systemic acquired resistance	4.02E-03
52	GO:0010103: stomatal complex morphogenesis	4.02E-03
53	GO:0019748: secondary metabolic process	4.96E-03
54	GO:0006749: glutathione metabolic process	6.40E-03
55	GO:0006400: tRNA modification	6.40E-03
56	GO:0031347: regulation of defense response	6.40E-03
57	GO:0045893: positive regulation of transcription, DNA-templated	6.52E-03
58	GO:0006396: RNA processing	6.90E-03
59	GO:0009902: chloroplast relocation	7.37E-03
60	GO:0009408: response to heat	7.69E-03
61	GO:0009704: de-etiolation	7.99E-03
62	GO:0006766: vitamin metabolic process	7.99E-03
63	GO:0009108: coenzyme biosynthetic process	7.99E-03
64	GO:0006189: 'de novo' IMP biosynthetic process	7.99E-03
65	GO:0010206: photosystem II repair	7.99E-03
66	GO:0034660: ncRNA metabolic process	7.99E-03
67	GO:0009106: lipoate metabolic process	7.99E-03
68	GO:0032880: regulation of protein localization	7.99E-03
69	GO:0019252: starch biosynthetic process	8.99E-03
70	GO:0009073: aromatic amino acid family biosynthetic process	9.46E-03
71	GO:0051604: protein maturation	9.71E-03
72	GO:0006012: galactose metabolic process	9.71E-03
73	GO:0019344: cysteine biosynthetic process	1.02E-02
74	GO:0045087: innate immune response	1.15E-02
75	GO:0001666: response to hypoxia	1.15E-02
76	GO:0016226: iron-sulfur cluster assembly	1.27E-02
77	GO:0009407: toxin catabolic process	1.35E-02
78	GO:0000302: response to reactive oxygen species	1.35E-02
79	GO:0000023: maltose metabolic process	1.45E-02
80	GO:0006184: obsolete GTP catabolic process	1.68E-02
81	GO:0006546: glycine catabolic process	1.77E-02
82	GO:0009409: response to cold	1.79E-02
83	GO:0015995: chlorophyll biosynthetic process	2.08E-02
84	GO:0042793: transcription from plastid promoter	2.23E-02
85	GO:0006636: unsaturated fatty acid biosynthetic process	2.48E-02
86	GO:0009965: leaf morphogenesis	2.56E-02
87	GO:0042545: cell wall modification	2.73E-02
88	GO:0010207: photosystem II assembly	2.96E-02
89	GO:0030154: cell differentiation	3.00E-02
90	GO:0006508: proteolysis	3.23E-02
91	GO:0016036: cellular response to phosphate starvation	3.27E-02
92	GO:0008219: cell death	3.27E-02
93	GO:0044267: cellular protein metabolic process	3.27E-02
94	GO:0044237: cellular metabolic process	3.54E-02
95	GO:0009058: biosynthetic process	3.59E-02
96	GO:0006950: response to stress	3.69E-02
97	GO:0006807: nitrogen compound metabolic process	3.84E-02
98	GO:0035304: regulation of protein dephosphorylation	3.84E-02
99	GO:0051258: protein polymerization	4.14E-02
100	GO:0009695: jasmonic acid biosynthetic process	4.14E-02
101	GO:0006869: lipid transport	4.14E-02
102	GO:0009416: response to light stimulus	4.18E-02
103	GO:0007017: microtubule-based process	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0042586: peptide deformylase activity	0.00E+00
2	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
3	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
4	GO:0008176: tRNA (guanine-N7-)-methyltransferase activity	0.00E+00
5	GO:0003919: FMN adenylyltransferase activity	0.00E+00
6	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
7	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
8	GO:0051082: unfolded protein binding	9.33E-06
9	GO:0004853: uroporphyrinogen decarboxylase activity	1.39E-05
10	GO:0000774: adenyl-nucleotide exchange factor activity	4.90E-05
11	GO:0016817: hydrolase activity, acting on acid anhydrides	3.02E-04
12	GO:0004525: ribonuclease III activity	4.35E-04
13	GO:0008565: protein transporter activity	5.31E-04
14	GO:0051087: chaperone binding	5.92E-04
15	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	6.44E-04
16	GO:0004823: leucine-tRNA ligase activity	6.44E-04
17	GO:0004362: glutathione-disulfide reductase activity	6.44E-04
18	GO:0004585: ornithine carbamoyltransferase activity	6.44E-04
19	GO:0008146: sulfotransferase activity	6.44E-04
20	GO:0046914: transition metal ion binding	1.22E-03
21	GO:0005496: steroid binding	1.49E-03
22	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.49E-03
23	GO:0004252: serine-type endopeptidase activity	1.61E-03
24	GO:0016743: carboxyl- or carbamoyltransferase activity	2.46E-03
25	GO:0016831: carboxy-lyase activity	2.73E-03
26	GO:0004765: shikimate kinase activity	3.63E-03
27	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	3.63E-03
28	GO:0070569: uridylyltransferase activity	3.63E-03
29	GO:0003978: UDP-glucose 4-epimerase activity	4.96E-03
30	GO:0031072: heat shock protein binding	5.01E-03
31	GO:0008173: RNA methyltransferase activity	6.40E-03
32	GO:0005525: GTP binding	7.11E-03
33	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	7.99E-03
34	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	7.99E-03
35	GO:0043022: ribosome binding	9.71E-03
36	GO:0008266: poly(U) RNA binding	1.15E-02
37	GO:0005507: copper ion binding	1.22E-02
38	GO:0003690: double-stranded DNA binding	1.77E-02
39	GO:0042803: protein homodimerization activity	2.44E-02
40	GO:0005524: ATP binding	3.37E-02
41	GO:0005200: structural constituent of cytoskeleton	3.55E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0009513: etioplast	0.00E+00
4	GO:0042646: plastid nucleoid	0.00E+00
5	GO:0009507: chloroplast	1.18E-15
6	GO:0009570: chloroplast stroma	1.46E-10
7	GO:0009941: chloroplast envelope	5.87E-09
8	GO:0009535: chloroplast thylakoid membrane	1.27E-08
9	GO:0009532: plastid stroma	1.83E-05
10	GO:0009579: thylakoid	9.41E-05
11	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	6.44E-04
12	GO:0009526: plastid envelope	6.44E-04
13	GO:0009509: chromoplast	6.44E-04
14	GO:0005759: mitochondrial matrix	8.99E-04
15	GO:0009533: chloroplast stromal thylakoid	1.49E-03
16	GO:0009536: plastid	2.92E-03
17	GO:0009534: chloroplast thylakoid	3.45E-03
18	GO:0005739: mitochondrion	3.99E-03
19	GO:0009840: chloroplastic endopeptidase Clp complex	4.96E-03
20	GO:0019898: extrinsic component of membrane	6.40E-03
21	GO:0009654: photosystem II oxygen evolving complex	7.99E-03
22	GO:0009501: amyloplast	7.99E-03
23	GO:0010319: stromule	1.18E-02
24	GO:0031977: thylakoid lumen	1.27E-02
25	GO:0030126: COPI vesicle coat	1.35E-02
26	GO:0009543: chloroplast thylakoid lumen	2.23E-02
27	GO:0043234: protein complex	4.45E-02
28	GO:0009706: chloroplast inner membrane	4.76E-02