Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G140739

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043137: DNA replication, removal of RNA primer0.00E+00
2GO:0006268: DNA unwinding involved in DNA replication0.00E+00
3GO:0010425: DNA methylation on cytosine within a CNG sequence0.00E+00
4GO:0006260: DNA replication3.91E-12
5GO:0007049: cell cycle1.33E-08
6GO:0007018: microtubule-based movement3.07E-07
7GO:0006270: DNA replication initiation4.41E-07
8GO:0032508: DNA duplex unwinding4.55E-07
9GO:0010069: zygote asymmetric cytokinesis in embryo sac4.27E-06
10GO:0043987: histone H3-S10 phosphorylation4.27E-06
11GO:0045814: negative regulation of gene expression, epigenetic4.27E-06
12GO:0016572: histone phosphorylation6.14E-06
13GO:0006342: chromatin silencing6.14E-06
14GO:0006275: regulation of DNA replication1.20E-05
15GO:0010389: regulation of G2/M transition of mitotic cell cycle2.57E-05
16GO:0090116: C-5 methylation of cytosine3.58E-05
17GO:0051567: histone H3-K9 methylation4.93E-05
18GO:0006306: DNA methylation6.32E-05
19GO:0051301: cell division9.91E-05
20GO:0042276: error-prone translesion synthesis3.35E-04
21GO:1990426: mitotic recombination-dependent replication fork processing3.35E-04
22GO:0009909: regulation of flower development3.55E-04
23GO:0051726: regulation of cell cycle4.47E-04
24GO:0006259: DNA metabolic process4.72E-04
25GO:0000911: cytokinesis by cell plate formation5.95E-04
26GO:0009956: radial pattern formation7.87E-04
27GO:0009186: deoxyribonucleoside diphosphate metabolic process7.87E-04
28GO:0009755: hormone-mediated signaling pathway7.87E-04
29GO:0006281: DNA repair9.54E-04
30GO:0009294: DNA mediated transformation9.55E-04
31GO:0009957: epidermal cell fate specification1.33E-03
32GO:0022904: respiratory electron transport chain1.33E-03
33GO:0009966: regulation of signal transduction1.43E-03
34GO:0008356: asymmetric cell division1.94E-03
35GO:0032147: activation of protein kinase activity1.94E-03
36GO:0006265: DNA topological change2.61E-03
37GO:0010082: regulation of root meristem growth2.61E-03
38GO:0060236: regulation of mitotic spindle organization2.61E-03
39GO:0032875: regulation of DNA endoreduplication2.61E-03
40GO:0010087: phloem or xylem histogenesis3.37E-03
41GO:0006084: acetyl-CoA metabolic process4.21E-03
42GO:0010583: response to cyclopentenone4.21E-03
43GO:0055072: iron ion homeostasis4.21E-03
44GO:0009934: regulation of meristem structural organization4.21E-03
45GO:0048449: floral organ formation5.09E-03
46GO:0010074: maintenance of meristem identity5.09E-03
47GO:0090305: nucleic acid phosphodiester bond hydrolysis6.04E-03
48GO:0006302: double-strand break repair6.04E-03
49GO:0042127: regulation of cell proliferation7.06E-03
50GO:0016570: histone modification8.11E-03
51GO:0048453: sepal formation8.11E-03
52GO:0010048: vernalization response8.11E-03
53GO:0006284: base-excision repair8.11E-03
54GO:0012501: programmed cell death8.11E-03
55GO:0006974: cellular response to DNA damage stimulus9.23E-03
56GO:0051225: spindle assembly9.23E-03
57GO:0019915: lipid storage9.23E-03
58GO:0048451: petal formation9.23E-03
59GO:0016571: histone methylation1.04E-02
60GO:0009165: nucleotide biosynthetic process1.04E-02
61GO:0010332: response to gamma radiation1.04E-02
62GO:0009607: response to biotic stimulus1.16E-02
63GO:0048316: seed development1.16E-02
64GO:0006406: mRNA export from nucleus1.16E-02
65GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.29E-02
66GO:0010162: seed dormancy process1.29E-02
67GO:0006396: RNA processing1.40E-02
68GO:0050826: response to freezing1.42E-02
69GO:0007062: sister chromatid cohesion1.42E-02
70GO:0000724: double-strand break repair via homologous recombination1.56E-02
71GO:0006310: DNA recombination1.70E-02
72GO:0008219: cell death1.70E-02
73GO:0010182: sugar mediated signaling pathway1.99E-02
74GO:0009553: embryo sac development2.15E-02
75GO:0051258: protein polymerization2.15E-02
76GO:0007017: microtubule-based process2.47E-02
77GO:0009845: seed germination2.47E-02
78GO:0031047: gene silencing by RNA2.64E-02
79GO:0009933: meristem structural organization2.81E-02
80GO:0000226: microtubule cytoskeleton organization2.98E-02
81GO:0016579: protein deubiquitination3.34E-02
82GO:0048366: leaf development3.53E-02
83GO:0009790: embryo development3.72E-02
84GO:0009640: photomorphogenesis4.72E-02
RankGO TermAdjusted P value
1GO:0008409: 5'-3' exonuclease activity0.00E+00
2GO:0003678: DNA helicase activity1.87E-07
3GO:0003777: microtubule motor activity3.07E-07
4GO:0008017: microtubule binding1.50E-06
5GO:0035175: histone kinase activity (H3-S10 specific)4.27E-06
6GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor1.55E-05
7GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.58E-05
8GO:0030337: DNA polymerase processivity factor activity3.35E-04
9GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.35E-04
10GO:0017108: 5'-flap endonuclease activity3.35E-04
11GO:0000150: recombinase activity3.35E-04
12GO:0003916: DNA topoisomerase activity3.35E-04
13GO:0005524: ATP binding6.33E-04
14GO:0008569: ATP-dependent microtubule motor activity, minus-end-directed7.87E-04
15GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.94E-03
16GO:0003677: DNA binding2.02E-03
17GO:0000166: nucleotide binding4.79E-03
18GO:0008094: DNA-dependent ATPase activity5.09E-03
19GO:0046914: transition metal ion binding8.11E-03
20GO:0004518: nuclease activity8.11E-03
21GO:0003684: damaged DNA binding8.11E-03
22GO:0003697: single-stranded DNA binding9.23E-03
23GO:0003690: double-stranded DNA binding9.23E-03
24GO:0004519: endonuclease activity1.04E-02
25GO:0004527: exonuclease activity1.29E-02
26GO:0019901: protein kinase binding1.42E-02
27GO:0016651: oxidoreductase activity, acting on NAD(P)H1.42E-02
28GO:0005200: structural constituent of cytoskeleton1.84E-02
29GO:0045735: nutrient reservoir activity3.53E-02
30GO:0005516: calmodulin binding4.93E-02
RankGO TermAdjusted P value
1GO:0000307: cyclin-dependent protein kinase holoenzyme complex0.00E+00
2GO:0033095: aleurone grain0.00E+00
3GO:0042555: MCM complex6.19E-08
4GO:0005871: kinesin complex2.60E-07
5GO:0005874: microtubule2.89E-07
6GO:0005971: ribonucleoside-diphosphate reductase complex1.55E-05
7GO:0005875: microtubule associated complex2.81E-05
8GO:0005819: spindle1.42E-04
9GO:0043626: PCNA complex3.35E-04
10GO:0000347: THO complex3.35E-04
11GO:0005634: nucleus3.34E-03
12GO:0016604: nuclear body5.09E-03
13GO:0005730: nucleolus5.94E-03
14GO:0005654: nucleoplasm1.70E-02
15GO:0031966: mitochondrial membrane1.70E-02
16GO:0019013: viral nucleocapsid1.99E-02
17GO:0043234: protein complex2.30E-02
18GO:0005635: nuclear envelope2.47E-02
19GO:0005694: chromosome3.58E-02