Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G139894

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032776: DNA methylation on cytosine0.00E+00
2GO:0031508: pericentric heterochromatin assembly0.00E+00
3GO:0045732: positive regulation of protein catabolic process0.00E+00
4GO:0006260: DNA replication1.34E-15
5GO:0032508: DNA duplex unwinding8.64E-11
6GO:0006270: DNA replication initiation7.69E-09
7GO:0009186: deoxyribonucleoside diphosphate metabolic process6.00E-07
8GO:0007049: cell cycle6.79E-07
9GO:0051726: regulation of cell cycle4.77E-05
10GO:0012501: programmed cell death8.97E-05
11GO:0042276: error-prone translesion synthesis1.10E-04
12GO:0009556: microsporogenesis1.10E-04
13GO:0010425: DNA methylation on cytosine within a CNG sequence1.10E-04
14GO:0009294: DNA mediated transformation1.97E-04
15GO:0010069: zygote asymmetric cytokinesis in embryo sac2.75E-04
16GO:0009956: radial pattern formation2.75E-04
17GO:0043987: histone H3-S10 phosphorylation2.75E-04
18GO:0046621: negative regulation of organ growth2.75E-04
19GO:0045814: negative regulation of gene expression, epigenetic2.75E-04
20GO:0006333: chromatin assembly or disassembly4.75E-04
21GO:0022904: respiratory electron transport chain4.75E-04
22GO:0007276: gamete generation4.75E-04
23GO:0008356: asymmetric cell division7.03E-04
24GO:0090116: C-5 methylation of cytosine7.03E-04
25GO:0006265: DNA topological change9.63E-04
26GO:0043622: cortical microtubule organization9.63E-04
27GO:0032875: regulation of DNA endoreduplication9.63E-04
28GO:0051302: regulation of cell division1.24E-03
29GO:0006325: chromatin organization1.55E-03
30GO:0055072: iron ion homeostasis1.55E-03
31GO:0051510: regulation of unidimensional cell growth1.55E-03
32GO:0030245: cellulose catabolic process1.86E-03
33GO:0051301: cell division1.86E-03
34GO:0016572: histone phosphorylation2.18E-03
35GO:0006342: chromatin silencing2.18E-03
36GO:0007275: multicellular organism development2.37E-03
37GO:0006259: DNA metabolic process2.89E-03
38GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.58E-03
39GO:0006310: DNA recombination5.99E-03
40GO:0009966: regulation of signal transduction5.99E-03
41GO:0048367: shoot system development7.55E-03
42GO:0006275: regulation of DNA replication9.83E-03
43GO:0009735: response to cytokinin1.10E-02
44GO:0009826: unidimensional cell growth1.10E-02
45GO:0048366: leaf development1.23E-02
46GO:0042538: hyperosmotic salinity response1.50E-02
47GO:0051567: histone H3-K9 methylation1.57E-02
48GO:0006306: DNA methylation1.72E-02
49GO:0009624: response to nematode2.02E-02
50GO:0010228: vegetative to reproductive phase transition of meristem2.10E-02
51GO:0009555: pollen development2.59E-02
52GO:0006396: RNA processing2.94E-02
53GO:0007264: small GTPase mediated signal transduction4.93E-02
RankGO TermAdjusted P value
1GO:0010997: anaphase-promoting complex binding0.00E+00
2GO:0003678: DNA helicase activity2.71E-11
3GO:0003688: DNA replication origin binding6.00E-07
4GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor2.29E-06
5GO:0046914: transition metal ion binding8.97E-05
6GO:0030337: DNA polymerase processivity factor activity1.10E-04
7GO:0008327: methyl-CpG binding1.10E-04
8GO:0010428: methyl-CpNpG binding1.10E-04
9GO:0010429: methyl-CpNpN binding1.10E-04
10GO:0003916: DNA topoisomerase activity1.10E-04
11GO:0035175: histone kinase activity (H3-S10 specific)2.75E-04
12GO:0010385: double-stranded methylated DNA binding4.75E-04
13GO:0003886: DNA (cytosine-5-)-methyltransferase activity7.03E-04
14GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.03E-04
15GO:0003682: chromatin binding8.01E-04
16GO:0003677: DNA binding9.80E-04
17GO:0008810: cellulase activity1.55E-03
18GO:0019901: protein kinase binding5.03E-03
19GO:0016651: oxidoreductase activity, acting on NAD(P)H5.03E-03
20GO:0042393: histone binding8.10E-03
21GO:0016881: acid-amino acid ligase activity2.51E-02
22GO:0008017: microtubule binding3.13E-02
RankGO TermAdjusted P value
1GO:0042555: MCM complex6.29E-12
2GO:0005971: ribonucleoside-diphosphate reductase complex2.29E-06
3GO:0005634: nucleus5.34E-05
4GO:0005769: early endosome1.10E-04
5GO:0010369: chromocenter1.10E-04
6GO:0043626: PCNA complex1.10E-04
7GO:0016604: nuclear body1.86E-03
8GO:0009504: cell plate5.50E-03
9GO:0031966: mitochondrial membrane5.99E-03
10GO:0019013: viral nucleocapsid7.02E-03
11GO:0005819: spindle7.55E-03
12GO:0045271: respiratory chain complex I1.86E-02
13GO:0005743: mitochondrial inner membrane2.26E-02