co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G139617

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043137: DNA replication, removal of RNA primer	0.00E+00
2	GO:0070143: mitochondrial alanyl-tRNA aminoacylation	0.00E+00
3	GO:0006419: alanyl-tRNA aminoacylation	0.00E+00
4	GO:0048574: long-day photoperiodism, flowering	0.00E+00
5	GO:0032465: regulation of cytokinesis	0.00E+00
6	GO:0006259: DNA metabolic process	1.39E-07
7	GO:0016572: histone phosphorylation	4.91E-06
8	GO:0006281: DNA repair	7.58E-06
9	GO:0006260: DNA replication	2.58E-05
10	GO:0006265: DNA topological change	5.66E-05
11	GO:0006396: RNA processing	2.10E-04
12	GO:0000226: microtubule cytoskeleton organization	2.36E-04
13	GO:0007049: cell cycle	2.67E-04
14	GO:0007059: chromosome segregation	3.05E-04
15	GO:0051028: mRNA transport	3.05E-04
16	GO:1990426: mitotic recombination-dependent replication fork processing	3.05E-04
17	GO:0009652: thigmotropism	3.05E-04
18	GO:0045292: mRNA cis splicing, via spliceosome	3.05E-04
19	GO:0051726: regulation of cell cycle	3.72E-04
20	GO:0000911: cytokinesis by cell plate formation	4.97E-04
21	GO:0006974: cellular response to DNA damage stimulus	5.02E-04
22	GO:0019915: lipid storage	5.02E-04
23	GO:0051567: histone H3-K9 methylation	5.43E-04
24	GO:0010332: response to gamma radiation	6.03E-04
25	GO:0006306: DNA methylation	6.46E-04
26	GO:0009186: deoxyribonucleoside diphosphate metabolic process	7.18E-04
27	GO:0043987: histone H3-S10 phosphorylation	7.18E-04
28	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	8.35E-04
29	GO:0010162: seed dormancy process	8.35E-04
30	GO:0051301: cell division	8.85E-04
31	GO:0050826: response to freezing	9.65E-04
32	GO:0009432: SOS response	1.22E-03
33	GO:0001558: regulation of cell growth	1.22E-03
34	GO:0010638: positive regulation of organelle organization	1.22E-03
35	GO:0048235: pollen sperm cell differentiation	1.22E-03
36	GO:0006310: DNA recombination	1.26E-03
37	GO:0010182: sugar mediated signaling pathway	1.59E-03
38	GO:0031053: primary miRNA processing	1.78E-03
39	GO:0009845: seed germination	2.13E-03
40	GO:0009909: regulation of flower development	2.20E-03
41	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	2.33E-03
42	GO:0033044: regulation of chromosome organization	2.39E-03
43	GO:0010050: vegetative phase change	3.07E-03
44	GO:0007267: cell-cell signaling	3.07E-03
45	GO:0009086: methionine biosynthetic process	3.54E-03
46	GO:0006084: acetyl-CoA metabolic process	3.84E-03
47	GO:0010583: response to cyclopentenone	3.84E-03
48	GO:0006366: transcription from RNA polymerase II promoter	3.84E-03
49	GO:0051604: protein maturation	4.66E-03
50	GO:0043039: tRNA aminoacylation	4.66E-03
51	GO:0010073: meristem maintenance	4.66E-03
52	GO:0010074: maintenance of meristem identity	4.66E-03
53	GO:0009640: photomorphogenesis	5.35E-03
54	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.51E-03
55	GO:0006302: double-strand break repair	5.51E-03
56	GO:0061025: membrane fusion	5.51E-03
57	GO:0006342: chromatin silencing	5.51E-03
58	GO:0000398: mRNA splicing, via spliceosome	6.42E-03
59	GO:0009451: RNA modification	6.43E-03
60	GO:0006338: chromatin remodeling	6.43E-03
61	GO:0008283: cell proliferation	7.20E-03
62	GO:0006499: N-terminal protein myristoylation	7.40E-03
63	GO:0009958: positive gravitropism	7.40E-03
64	GO:0006284: base-excision repair	7.40E-03
65	GO:0006312: mitotic recombination	7.40E-03
66	GO:0006479: protein methylation	7.40E-03
67	GO:0012501: programmed cell death	7.40E-03
68	GO:0016070: RNA metabolic process	7.40E-03
69	GO:0009616: virus induced gene silencing	7.40E-03
70	GO:0051225: spindle assembly	8.42E-03
71	GO:0001522: pseudouridine synthesis	9.49E-03
72	GO:0007034: vacuolar transport	9.49E-03
73	GO:0006289: nucleotide-excision repair	1.06E-02
74	GO:0031048: chromatin silencing by small RNA	1.06E-02
75	GO:0006406: mRNA export from nucleus	1.06E-02
76	GO:0010014: meristem initiation	1.17E-02
77	GO:0007131: reciprocal meiotic recombination	1.17E-02
78	GO:0009855: determination of bilateral symmetry	1.17E-02
79	GO:0006094: gluconeogenesis	1.42E-02
80	GO:0030036: actin cytoskeleton organization	1.42E-02
81	GO:0016126: sterol biosynthetic process	1.42E-02
82	GO:0000724: double-strand break repair via homologous recombination	1.42E-02
83	GO:0010267: production of ta-siRNAs involved in RNA interference	1.55E-02
84	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.55E-02
85	GO:0009966: regulation of signal transduction	1.55E-02
86	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.68E-02
87	GO:0010090: trichome morphogenesis	1.82E-02
88	GO:0000278: mitotic cell cycle	1.96E-02
89	GO:0006346: methylation-dependent chromatin silencing	1.96E-02
90	GO:0051258: protein polymerization	1.96E-02
91	GO:0007017: microtubule-based process	2.25E-02
92	GO:0006334: nucleosome assembly	2.55E-02
93	GO:0009933: meristem structural organization	2.56E-02
94	GO:0016567: protein ubiquitination	2.63E-02
95	GO:0009560: embryo sac egg cell differentiation	2.71E-02
96	GO:0015031: protein transport	2.81E-02
97	GO:0006397: mRNA processing	3.04E-02
98	GO:0006414: translational elongation	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0008409: 5'-3' exonuclease activity	0.00E+00
2	GO:0004813: alanine-tRNA ligase activity	0.00E+00
3	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	3.05E-05
4	GO:0008094: DNA-dependent ATPase activity	1.91E-04
5	GO:0000339: RNA cap binding	3.05E-04
6	GO:0017108: 5'-flap endonuclease activity	3.05E-04
7	GO:0000150: recombinase activity	3.05E-04
8	GO:0003916: DNA topoisomerase activity	3.05E-04
9	GO:0003684: damaged DNA binding	4.10E-04
10	GO:0003697: single-stranded DNA binding	5.02E-04
11	GO:0003688: DNA replication origin binding	7.18E-04
12	GO:0035175: histone kinase activity (H3-S10 specific)	7.18E-04
13	GO:0019901: protein kinase binding	9.65E-04
14	GO:0070628: proteasome binding	1.22E-03
15	GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	1.22E-03
16	GO:0005200: structural constituent of cytoskeleton	1.41E-03
17	GO:0016876: ligase activity, forming aminoacyl-tRNA and related compounds	2.39E-03
18	GO:0008536: Ran GTPase binding	3.07E-03
19	GO:0043130: ubiquitin binding	4.66E-03
20	GO:0009982: pseudouridine synthase activity	6.43E-03
21	GO:0000049: tRNA binding	6.43E-03
22	GO:0046914: transition metal ion binding	7.40E-03
23	GO:0004518: nuclease activity	7.40E-03
24	GO:0005484: SNAP receptor activity	7.40E-03
25	GO:0003690: double-stranded DNA binding	8.42E-03
26	GO:0004519: endonuclease activity	9.49E-03
27	GO:0004721: phosphoprotein phosphatase activity	9.80E-03
28	GO:0004527: exonuclease activity	1.17E-02
29	GO:0003723: RNA binding	1.28E-02
30	GO:0008017: microtubule binding	1.34E-02
31	GO:0008565: protein transporter activity	1.96E-02
32	GO:0045735: nutrient reservoir activity	3.21E-02
33	GO:0046982: protein heterodimerization activity	3.69E-02
34	GO:0003746: translation elongation factor activity	3.74E-02
35	GO:0005488: binding	3.74E-02
36	GO:0003677: DNA binding	3.93E-02
37	GO:0017111: nucleoside-triphosphatase activity	4.72E-02
38	GO:0003779: actin binding	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0033095: aleurone grain	0.00E+00
2	GO:0000812: Swr1 complex	0.00E+00
3	GO:0005730: nucleolus	8.80E-05
4	GO:0035267: NuA4 histone acetyltransferase complex	3.05E-04
5	GO:0005846: nuclear cap binding complex	3.05E-04
6	GO:0000815: ESCRT III complex	3.05E-04
7	GO:0005694: chromosome	1.03E-03
8	GO:0000775: chromosome, centromeric region	1.22E-03
9	GO:0005815: microtubule organizing center	1.22E-03
10	GO:0005971: ribonucleoside-diphosphate reductase complex	1.22E-03
11	GO:0000808: origin recognition complex	1.22E-03
12	GO:0019013: viral nucleocapsid	1.59E-03
13	GO:0005819: spindle	1.76E-03
14	GO:0005876: spindle microtubule	1.78E-03
15	GO:0031011: Ino80 complex	3.07E-03
16	GO:0010005: cortical microtubule, transverse to long axis	3.07E-03
17	GO:0009574: preprophase band	3.07E-03
18	GO:0009524: phragmoplast	3.26E-03
19	GO:0005874: microtubule	3.37E-03
20	GO:0012505: endomembrane system	3.84E-03
21	GO:0005634: nucleus	4.18E-03
22	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.66E-03
23	GO:0016604: nuclear body	4.66E-03
24	GO:0005681: spliceosomal complex	8.42E-03
25	GO:0005643: nuclear pore	1.17E-02
26	GO:0009506: plasmodesma	1.40E-02
27	GO:0009504: cell plate	1.42E-02
28	GO:0005654: nucleoplasm	1.55E-02
29	GO:0031966: mitochondrial membrane	1.55E-02
30	GO:0043234: protein complex	2.10E-02
31	GO:0000786: nucleosome	2.25E-02
32	GO:0045271: respiratory chain complex I	4.88E-02