co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G133844

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
2	GO:0042550: photosystem I stabilization	0.00E+00
3	GO:0009234: menaquinone biosynthetic process	0.00E+00
4	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
5	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
6	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
7	GO:1901259: chloroplast rRNA processing	0.00E+00
8	GO:0010028: xanthophyll cycle	0.00E+00
9	GO:0035436: triose phosphate transmembrane transport	0.00E+00
10	GO:0090342: regulation of cell aging	0.00E+00
11	GO:0015714: phosphoenolpyruvate transport	0.00E+00
12	GO:0032544: plastid translation	0.00E+00
13	GO:0042372: phylloquinone biosynthetic process	0.00E+00
14	GO:0071486: cellular response to high light intensity	0.00E+00
15	GO:0051188: cofactor biosynthetic process	0.00E+00
16	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
17	GO:0043043: peptide biosynthetic process	0.00E+00
18	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
19	GO:0042821: pyridoxal biosynthetic process	0.00E+00
20	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.11E-22
21	GO:0010027: thylakoid membrane organization	4.37E-19
22	GO:0006098: pentose-phosphate shunt	6.58E-18
23	GO:0015979: photosynthesis	1.88E-17
24	GO:0010207: photosystem II assembly	1.04E-14
25	GO:0006364: rRNA processing	6.01E-12
26	GO:0015995: chlorophyll biosynthetic process	1.17E-11
27	GO:0009902: chloroplast relocation	5.67E-10
28	GO:0006412: translation	9.14E-10
29	GO:0009773: photosynthetic electron transport in photosystem I	1.69E-09
30	GO:0016117: carotenoid biosynthetic process	2.92E-09
31	GO:0042793: transcription from plastid promoter	9.35E-08
32	GO:0045036: protein targeting to chloroplast	2.00E-06
33	GO:0043085: positive regulation of catalytic activity	2.27E-06
34	GO:0016226: iron-sulfur cluster assembly	2.68E-06
35	GO:0006636: unsaturated fatty acid biosynthetic process	4.93E-06
36	GO:0009658: chloroplast organization	5.33E-06
37	GO:0000096: sulfur amino acid metabolic process	2.33E-05
38	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.97E-05
39	GO:0010236: plastoquinone biosynthetic process	6.97E-05
40	GO:0006655: phosphatidylglycerol biosynthetic process	7.23E-05
41	GO:0009767: photosynthetic electron transport chain	7.23E-05
42	GO:0034660: ncRNA metabolic process	8.94E-05
43	GO:0009106: lipoate metabolic process	8.94E-05
44	GO:0006766: vitamin metabolic process	8.94E-05
45	GO:0009108: coenzyme biosynthetic process	8.94E-05
46	GO:0009637: response to blue light	1.90E-04
47	GO:0019761: glucosinolate biosynthetic process	2.24E-04
48	GO:0010114: response to red light	2.62E-04
49	GO:0010103: stomatal complex morphogenesis	2.69E-04
50	GO:0010218: response to far red light	3.49E-04
51	GO:0000023: maltose metabolic process	3.99E-04
52	GO:0006354: DNA-templated transcription, elongation	4.26E-04
53	GO:0016556: mRNA modification	4.26E-04
54	GO:0045037: protein import into chloroplast stroma	4.59E-04
55	GO:0045038: protein import into chloroplast thylakoid membrane	4.59E-04
56	GO:0006546: glycine catabolic process	5.60E-04
57	GO:0009765: photosynthesis, light harvesting	5.60E-04
58	GO:0019252: starch biosynthetic process	7.50E-04
59	GO:0009772: photosynthetic electron transport in photosystem II	7.74E-04
60	GO:0009813: flavonoid biosynthetic process	7.74E-04
61	GO:0019748: secondary metabolic process	7.74E-04
62	GO:0070838: divalent metal ion transport	7.74E-04
63	GO:0008361: regulation of cell size	1.59E-03
64	GO:0006434: seryl-tRNA aminoacylation	1.59E-03
65	GO:0016050: vesicle organization	1.59E-03
66	GO:0006573: valine metabolic process	1.59E-03
67	GO:0032543: mitochondrial translation	1.59E-03
68	GO:0009768: photosynthesis, light harvesting in photosystem I	1.59E-03
69	GO:0009069: serine family amino acid metabolic process	1.59E-03
70	GO:0019253: reductive pentose-phosphate cycle	1.59E-03
71	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.59E-03
72	GO:0019676: ammonia assimilation cycle	1.59E-03
73	GO:0009443: pyridoxal 5'-phosphate salvage	1.59E-03
74	GO:0030154: cell differentiation	1.61E-03
75	GO:0009657: plastid organization	1.61E-03
76	GO:0030003: cellular cation homeostasis	1.67E-03
77	GO:0010206: photosystem II repair	1.67E-03
78	GO:0010155: regulation of proton transport	1.89E-03
79	GO:0018298: protein-chromophore linkage	1.89E-03
80	GO:0006399: tRNA metabolic process	2.21E-03
81	GO:0006418: tRNA aminoacylation for protein translation	2.53E-03
82	GO:0009072: aromatic amino acid family metabolic process	2.85E-03
83	GO:0015977: carbon fixation	2.85E-03
84	GO:0009695: jasmonic acid biosynthetic process	2.92E-03
85	GO:0009416: response to light stimulus	2.97E-03
86	GO:0048653: anther development	3.60E-03
87	GO:0044272: sulfur compound biosynthetic process	3.60E-03
88	GO:0006432: phenylalanyl-tRNA aminoacylation	3.60E-03
89	GO:0006875: cellular metal ion homeostasis	3.60E-03
90	GO:0009409: response to cold	4.31E-03
91	GO:0009697: salicylic acid biosynthetic process	4.49E-03
92	GO:0080167: response to karrikin	5.46E-03
93	GO:0009735: response to cytokinin	6.04E-03
94	GO:0016024: CDP-diacylglycerol biosynthetic process	6.10E-03
95	GO:0034599: cellular response to oxidative stress	6.10E-03
96	GO:0019760: glucosinolate metabolic process	6.10E-03
97	GO:0007186: G-protein coupled receptor signaling pathway	6.10E-03
98	GO:0006733: oxidoreduction coenzyme metabolic process	6.10E-03
99	GO:0009073: aromatic amino acid family biosynthetic process	6.72E-03
100	GO:0019344: cysteine biosynthetic process	7.42E-03
101	GO:0045893: positive regulation of transcription, DNA-templated	8.70E-03
102	GO:0019216: regulation of lipid metabolic process	9.05E-03
103	GO:0010304: PSII associated light-harvesting complex II catabolic process	9.05E-03
104	GO:0051205: protein insertion into membrane	9.05E-03
105	GO:0009595: detection of biotic stimulus	9.05E-03
106	GO:0009117: nucleotide metabolic process	9.05E-03
107	GO:0006353: DNA-templated transcription, termination	9.05E-03
108	GO:0006014: D-ribose metabolic process	9.05E-03
109	GO:0007389: pattern specification process	9.05E-03
110	GO:0050821: protein stabilization	9.05E-03
111	GO:0006631: fatty acid metabolic process	1.17E-02
112	GO:0019684: photosynthesis, light reaction	1.17E-02
113	GO:0048481: plant ovule development	1.17E-02
114	GO:0009088: threonine biosynthetic process	1.24E-02
115	GO:0060416: response to growth hormone	1.24E-02
116	GO:0050790: regulation of catalytic activity	1.24E-02
117	GO:0043900: regulation of multi-organism process	1.24E-02
118	GO:0034755: iron ion transmembrane transport	1.24E-02
119	GO:0007568: aging	1.24E-02
120	GO:0015994: chlorophyll metabolic process	1.24E-02
121	GO:0070084: protein initiator methionine removal	1.24E-02
122	GO:0010189: vitamin E biosynthetic process	1.24E-02
123	GO:0006796: phosphate-containing compound metabolic process	1.24E-02
124	GO:0006569: tryptophan catabolic process	1.24E-02
125	GO:0006414: translational elongation	1.48E-02
126	GO:0006542: glutamine biosynthetic process	1.61E-02
127	GO:0009913: epidermal cell differentiation	1.61E-02
128	GO:0006568: tryptophan metabolic process	1.61E-02
129	GO:0007005: mitochondrion organization	1.61E-02
130	GO:0010224: response to UV-B	1.68E-02
131	GO:0035304: regulation of protein dephosphorylation	1.68E-02
132	GO:0046777: protein autophosphorylation	1.68E-02
133	GO:0008652: cellular amino acid biosynthetic process	1.84E-02
134	GO:0015986: ATP synthesis coupled proton transport	1.87E-02
135	GO:0009817: defense response to fungus, incompatible interaction	1.87E-02
136	GO:0010228: vegetative to reproductive phase transition of meristem	1.98E-02
137	GO:0006801: superoxide metabolic process	2.01E-02
138	GO:0009926: auxin polar transport	2.01E-02
139	GO:0009704: de-etiolation	2.01E-02
140	GO:0009987: cellular process	2.01E-02
141	GO:0009411: response to UV	2.01E-02
142	GO:0009814: defense response, incompatible interaction	2.01E-02
143	GO:0022900: electron transport chain	2.11E-02
144	GO:0009965: leaf morphogenesis	2.41E-02
145	GO:0043039: tRNA aminoacylation	2.45E-02
146	GO:0010310: regulation of hydrogen peroxide metabolic process	2.45E-02
147	GO:0009853: photorespiration	2.51E-02
148	GO:0006184: obsolete GTP catabolic process	2.68E-02
149	GO:0000413: protein peptidyl-prolyl isomerization	2.74E-02
150	GO:0042742: defense response to bacterium	2.85E-02
151	GO:0000162: tryptophan biosynthetic process	2.92E-02
152	GO:0040007: growth	2.92E-02
153	GO:0010015: root morphogenesis	2.92E-02
154	GO:0045454: cell redox homeostasis	3.21E-02
155	GO:0009832: plant-type cell wall biogenesis	3.42E-02
156	GO:0009684: indoleacetic acid biosynthetic process	3.42E-02
157	GO:0009407: toxin catabolic process	3.42E-02
158	GO:0006662: glycerol ether metabolic process	3.52E-02
159	GO:0006814: sodium ion transport	3.94E-02
160	GO:0006006: glucose metabolic process	3.94E-02
161	GO:0048527: lateral root development	3.94E-02
162	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
2	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
6	GO:0004802: transketolase activity	0.00E+00
7	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
10	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
11	GO:0031409: pigment binding	0.00E+00
12	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
13	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
14	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
15	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
16	GO:0005504: fatty acid binding	0.00E+00
17	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
18	GO:0045550: geranylgeranyl reductase activity	0.00E+00
19	GO:0003735: structural constituent of ribosome	1.56E-08
20	GO:0016168: chlorophyll binding	1.47E-05
21	GO:0045430: chalcone isomerase activity	6.97E-05
22	GO:0016872: intramolecular lyase activity	2.23E-04
23	GO:0016984: ribulose-bisphosphate carboxylase activity	4.59E-04
24	GO:0016209: antioxidant activity	4.59E-04
25	GO:0019843: rRNA binding	6.63E-04
26	GO:0070402: NADPH binding	1.59E-03
27	GO:0004795: threonine synthase activity	1.59E-03
28	GO:0034256: chlorophyll(ide) b reductase activity	1.59E-03
29	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.59E-03
30	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.59E-03
31	GO:0004618: phosphoglycerate kinase activity	1.59E-03
32	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.59E-03
33	GO:0004828: serine-tRNA ligase activity	1.59E-03
34	GO:0015088: copper uptake transmembrane transporter activity	1.59E-03
35	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.59E-03
36	GO:0004831: tyrosine-tRNA ligase activity	1.59E-03
37	GO:0009055: electron carrier activity	2.39E-03
38	GO:0051537: 2 iron, 2 sulfur cluster binding	2.92E-03
39	GO:0004812: aminoacyl-tRNA ligase activity	3.07E-03
40	GO:0004826: phenylalanine-tRNA ligase activity	3.60E-03
41	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	3.60E-03
42	GO:0004605: phosphatidate cytidylyltransferase activity	3.60E-03
43	GO:0051920: peroxiredoxin activity	3.60E-03
44	GO:0000049: tRNA binding	3.62E-03
45	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.62E-03
46	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	5.42E-03
47	GO:0033897: ribonuclease T2 activity	6.10E-03
48	GO:0015035: protein disulfide oxidoreductase activity	8.12E-03
49	GO:0004659: prenyltransferase activity	9.05E-03
50	GO:0004332: fructose-bisphosphate aldolase activity	9.05E-03
51	GO:0004747: ribokinase activity	9.05E-03
52	GO:0004765: shikimate kinase activity	9.05E-03
53	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	9.05E-03
54	GO:0071949: FAD binding	9.05E-03
55	GO:0003746: translation elongation factor activity	9.83E-03
56	GO:0070006: metalloaminopeptidase activity	1.24E-02
57	GO:0030234: enzyme regulator activity	1.24E-02
58	GO:0005381: iron ion transmembrane transporter activity	1.24E-02
59	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.24E-02
60	GO:0008235: metalloexopeptidase activity	1.61E-02
61	GO:0004356: glutamate-ammonia ligase activity	1.61E-02
62	GO:0004834: tryptophan synthase activity	1.61E-02
63	GO:0003723: RNA binding	1.74E-02
64	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	2.01E-02
65	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	2.01E-02
66	GO:0004784: superoxide dismutase activity	2.45E-02
67	GO:0004427: inorganic diphosphatase activity	2.92E-02
68	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.25E-02
69	GO:0004177: aminopeptidase activity	3.42E-02
70	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.42E-02
71	GO:0051536: iron-sulfur cluster binding	3.81E-02
72	GO:0043531: ADP binding	4.50E-02
73	GO:0003690: double-stranded DNA binding	4.50E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0009512: cytochrome b6f complex	0.00E+00
3	GO:0030093: chloroplast photosystem I	0.00E+00
4	GO:0009507: chloroplast	7.49E-59
5	GO:0009570: chloroplast stroma	3.26E-37
6	GO:0009941: chloroplast envelope	4.53E-33
7	GO:0009535: chloroplast thylakoid membrane	6.26E-29
8	GO:0009579: thylakoid	2.34E-19
9	GO:0009543: chloroplast thylakoid lumen	3.37E-11
10	GO:0005840: ribosome	3.64E-11
11	GO:0009534: chloroplast thylakoid	4.96E-09
12	GO:0031977: thylakoid lumen	8.35E-09
13	GO:0009295: nucleoid	2.66E-08
14	GO:0009522: photosystem I	5.45E-08
15	GO:0009523: photosystem II	6.86E-07
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.94E-07
17	GO:0009508: plastid chromosome	2.33E-05
18	GO:0010287: plastoglobule	1.29E-04
19	GO:0030529: intracellular ribonucleoprotein complex	2.50E-04
20	GO:0009538: photosystem I reaction center	4.59E-04
21	GO:0019898: extrinsic component of membrane	1.18E-03
22	GO:0009528: plastid inner membrane	1.59E-03
23	GO:0042406: extrinsic component of endoplasmic reticulum membrane	1.59E-03
24	GO:0000311: plastid large ribosomal subunit	1.59E-03
25	GO:0009527: plastid outer membrane	1.59E-03
26	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.59E-03
27	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	1.59E-03
28	GO:0009654: photosystem II oxygen evolving complex	1.67E-03
29	GO:0010319: stromule	1.68E-03
30	GO:0048046: apoplast	2.30E-03
31	GO:0005622: intracellular	2.70E-03
32	GO:0009533: chloroplast stromal thylakoid	3.60E-03
33	GO:0055028: cortical microtubule	6.10E-03
34	GO:0042651: thylakoid membrane	7.63E-03
35	GO:0015934: large ribosomal subunit	8.98E-03
36	GO:0015935: small ribosomal subunit	9.83E-03
37	GO:0009706: chloroplast inner membrane	2.28E-02
38	GO:0009532: plastid stroma	2.45E-02
39	GO:0009536: plastid	3.78E-02
40	GO:0016020: membrane	4.49E-02