Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G133358

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043686: co-translational protein modification0.00E+00
2GO:0090391: granum assembly0.00E+00
3GO:0018160: peptidyl-pyrromethane cofactor linkage0.00E+00
4GO:0006779: porphyrin-containing compound biosynthetic process7.63E-06
5GO:0030497: fatty acid elongation7.85E-06
6GO:0045037: protein import into chloroplast stroma1.83E-05
7GO:0006353: DNA-templated transcription, termination1.83E-05
8GO:0010072: primary shoot apical meristem specification3.44E-05
9GO:0033014: tetrapyrrole biosynthetic process8.50E-05
10GO:0009735: response to cytokinin1.46E-04
11GO:0006430: lysyl-tRNA aminoacylation2.26E-04
12GO:0006429: leucyl-tRNA aminoacylation2.26E-04
13GO:0032543: mitochondrial translation2.26E-04
14GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation2.26E-04
15GO:0009658: chloroplast organization3.39E-04
16GO:0010380: regulation of chlorophyll biosynthetic process5.40E-04
17GO:1901671: positive regulation of superoxide dismutase activity5.40E-04
18GO:0019464: glycine decarboxylation via glycine cleavage system5.40E-04
19GO:0000304: response to singlet oxygen9.23E-04
20GO:0006450: regulation of translational fidelity9.23E-04
21GO:0010143: cutin biosynthetic process9.23E-04
22GO:0048367: shoot system development1.18E-03
23GO:0006782: protoporphyrinogen IX biosynthetic process1.36E-03
24GO:0010417: glucuronoxylan biosynthetic process1.36E-03
25GO:0009933: meristem structural organization1.72E-03
26GO:0001676: long-chain fatty acid metabolic process1.84E-03
27GO:0006633: fatty acid biosynthetic process2.09E-03
28GO:0006457: protein folding2.43E-03
29GO:0010025: wax biosynthetic process2.89E-03
30GO:0019538: protein metabolic process2.89E-03
31GO:0006418: tRNA aminoacylation for protein translation3.56E-03
32GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.17E-03
33GO:0009834: plant-type secondary cell wall biogenesis4.86E-03
34GO:0048364: root development5.89E-03
35GO:0045492: xylan biosynthetic process6.33E-03
36GO:0006546: glycine catabolic process6.33E-03
37GO:0006655: phosphatidylglycerol biosynthetic process7.97E-03
38GO:0031408: oxylipin biosynthetic process7.97E-03
39GO:0042793: transcription from plastid promoter7.97E-03
40GO:0005982: starch metabolic process8.84E-03
41GO:0034976: response to endoplasmic reticulum stress9.73E-03
42GO:0008610: lipid biosynthetic process1.16E-02
43GO:0044267: cellular protein metabolic process1.16E-02
44GO:0009627: systemic acquired resistance1.26E-02
45GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.26E-02
46GO:0010103: stomatal complex morphogenesis1.26E-02
47GO:0035304: regulation of protein dephosphorylation1.36E-02
48GO:0008643: carbohydrate transport1.58E-02
49GO:0009902: chloroplast relocation1.92E-02
50GO:0000160: phosphorelay signal transduction system2.04E-02
51GO:0009793: embryo development ending in seed dormancy3.85E-02
52GO:0015995: chlorophyll biosynthetic process3.96E-02
53GO:0007018: microtubule-based movement4.27E-02
54GO:0007165: signal transduction4.71E-02
RankGO TermAdjusted P value
1GO:0042586: peptide deformylase activity0.00E+00
2GO:0003989: acetyl-CoA carboxylase activity0.00E+00
3GO:0004418: hydroxymethylbilane synthase activity0.00E+00
4GO:0004109: coproporphyrinogen oxidase activity0.00E+00
5GO:0004075: biotin carboxylase activity2.12E-06
6GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity2.26E-04
7GO:0004467: long-chain fatty acid-CoA ligase activity2.26E-04
8GO:0004824: lysine-tRNA ligase activity2.26E-04
9GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.26E-04
10GO:0004823: leucine-tRNA ligase activity2.26E-04
11GO:0031957: very long-chain fatty acid-CoA ligase activity2.26E-04
12GO:0004462: lactoylglutathione lyase activity5.40E-04
13GO:0004853: uroporphyrinogen decarboxylase activity5.40E-04
14GO:0015020: glucuronosyltransferase activity9.23E-04
15GO:0080116: glucuronoxylan glucuronosyltransferase activity9.23E-04
16GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor2.89E-03
17GO:0004812: aminoacyl-tRNA ligase activity4.02E-03
18GO:0046914: transition metal ion binding5.57E-03
19GO:0043531: ADP binding6.33E-03
20GO:0008081: phosphoric diester hydrolase activity8.84E-03
21GO:0004252: serine-type endopeptidase activity9.65E-03
22GO:0016831: carboxy-lyase activity9.73E-03
23GO:0016874: ligase activity1.13E-02
24GO:0008233: peptidase activity1.38E-02
25GO:0031072: heat shock protein binding1.47E-02
26GO:0016798: hydrolase activity, acting on glycosyl bonds1.64E-02
27GO:0008236: serine-type peptidase activity2.41E-02
28GO:0003777: microtubule motor activity4.27E-02
RankGO TermAdjusted P value
1GO:0009941: chloroplast envelope9.47E-09
2GO:0009532: plastid stroma1.48E-06
3GO:0009507: chloroplast6.84E-06
4GO:0009570: chloroplast stroma9.03E-06
5GO:0009840: chloroplastic endopeptidase Clp complex3.44E-05
6GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.26E-04
7GO:0005960: glycine cleavage complex2.26E-04
8GO:0009706: chloroplast inner membrane1.43E-03
9GO:0009579: thylakoid2.64E-03
10GO:0009536: plastid1.68E-02
11GO:0005875: microtubule associated complex2.54E-02
12GO:0010319: stromule2.67E-02
13GO:0031977: thylakoid lumen2.80E-02
14GO:0009535: chloroplast thylakoid membrane3.27E-02
15GO:0009534: chloroplast thylakoid3.96E-02
16GO:0005871: kinesin complex4.12E-02