co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G133018

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032544: plastid translation	0.00E+00
2	GO:0071486: cellular response to high light intensity	0.00E+00
3	GO:0051188: cofactor biosynthetic process	0.00E+00
4	GO:0043043: peptide biosynthetic process	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
7	GO:0010028: xanthophyll cycle	0.00E+00
8	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.08E-23
9	GO:0010027: thylakoid membrane organization	1.16E-14
10	GO:0006098: pentose-phosphate shunt	6.96E-14
11	GO:0010207: photosystem II assembly	1.45E-12
12	GO:0015995: chlorophyll biosynthetic process	6.80E-12
13	GO:0006412: translation	3.48E-11
14	GO:0045036: protein targeting to chloroplast	7.59E-10
15	GO:0006364: rRNA processing	1.01E-09
16	GO:0009902: chloroplast relocation	3.20E-09
17	GO:0042793: transcription from plastid promoter	9.39E-08
18	GO:0006636: unsaturated fatty acid biosynthetic process	1.47E-07
19	GO:0016117: carotenoid biosynthetic process	3.44E-07
20	GO:0000096: sulfur amino acid metabolic process	2.35E-06
21	GO:0015979: photosynthesis	6.53E-06
22	GO:0009108: coenzyme biosynthetic process	9.94E-06
23	GO:0009106: lipoate metabolic process	9.94E-06
24	GO:0006766: vitamin metabolic process	9.94E-06
25	GO:0042372: phylloquinone biosynthetic process	1.32E-05
26	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.32E-05
27	GO:0016226: iron-sulfur cluster assembly	1.43E-05
28	GO:0009773: photosynthetic electron transport in photosystem I	2.60E-05
29	GO:0006354: DNA-templated transcription, elongation	5.76E-05
30	GO:0043085: positive regulation of catalytic activity	7.01E-05
31	GO:0006546: glycine catabolic process	7.88E-05
32	GO:0009767: photosynthetic electron transport chain	1.35E-04
33	GO:0019761: glucosinolate biosynthetic process	1.54E-04
34	GO:0019748: secondary metabolic process	1.83E-04
35	GO:0030154: cell differentiation	2.59E-04
36	GO:0010206: photosystem II repair	4.16E-04
37	GO:0034660: ncRNA metabolic process	4.16E-04
38	GO:0009695: jasmonic acid biosynthetic process	5.02E-04
39	GO:0009443: pyridoxal 5'-phosphate salvage	6.25E-04
40	GO:0008361: regulation of cell size	6.25E-04
41	GO:0006434: seryl-tRNA aminoacylation	6.25E-04
42	GO:0016050: vesicle organization	6.25E-04
43	GO:0006573: valine metabolic process	6.25E-04
44	GO:0009768: photosynthesis, light harvesting in photosystem I	6.25E-04
45	GO:0009069: serine family amino acid metabolic process	6.25E-04
46	GO:0009072: aromatic amino acid family metabolic process	7.43E-04
47	GO:0045893: positive regulation of transcription, DNA-templated	1.08E-03
48	GO:0016556: mRNA modification	1.17E-03
49	GO:0009765: photosynthesis, light harvesting	1.42E-03
50	GO:0010236: plastoquinone biosynthetic process	1.45E-03
51	GO:0048653: anther development	1.45E-03
52	GO:0044272: sulfur compound biosynthetic process	1.45E-03
53	GO:0006655: phosphatidylglycerol biosynthetic process	1.98E-03
54	GO:0000023: maltose metabolic process	2.07E-03
55	GO:0009658: chloroplast organization	2.23E-03
56	GO:0007186: G-protein coupled receptor signaling pathway	2.39E-03
57	GO:0006733: oxidoreduction coenzyme metabolic process	2.39E-03
58	GO:0016024: CDP-diacylglycerol biosynthetic process	2.39E-03
59	GO:0034599: cellular response to oxidative stress	2.39E-03
60	GO:0019684: photosynthesis, light reaction	3.00E-03
61	GO:0006631: fatty acid metabolic process	3.00E-03
62	GO:0008652: cellular amino acid biosynthetic process	3.26E-03
63	GO:0018298: protein-chromophore linkage	3.41E-03
64	GO:0010155: regulation of proton transport	3.41E-03
65	GO:0045038: protein import into chloroplast thylakoid membrane	3.53E-03
66	GO:0007389: pattern specification process	3.53E-03
67	GO:0009833: plant-type primary cell wall biogenesis	3.53E-03
68	GO:0019216: regulation of lipid metabolic process	3.53E-03
69	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.53E-03
70	GO:0009117: nucleotide metabolic process	3.53E-03
71	GO:0045037: protein import into chloroplast stroma	3.53E-03
72	GO:0006353: DNA-templated transcription, termination	3.53E-03
73	GO:0010103: stomatal complex morphogenesis	3.85E-03
74	GO:0009965: leaf morphogenesis	4.30E-03
75	GO:0035304: regulation of protein dephosphorylation	4.32E-03
76	GO:0046777: protein autophosphorylation	4.32E-03
77	GO:0070838: divalent metal ion transport	4.81E-03
78	GO:0006796: phosphate-containing compound metabolic process	4.81E-03
79	GO:0006569: tryptophan catabolic process	4.81E-03
80	GO:0060416: response to growth hormone	4.81E-03
81	GO:0009772: photosynthetic electron transport in photosystem II	4.81E-03
82	GO:0009813: flavonoid biosynthetic process	4.81E-03
83	GO:0015994: chlorophyll metabolic process	4.81E-03
84	GO:0009913: epidermal cell differentiation	6.22E-03
85	GO:0007005: mitochondrion organization	6.22E-03
86	GO:0000413: protein peptidyl-prolyl isomerization	7.06E-03
87	GO:0042742: defense response to bacterium	7.36E-03
88	GO:0009814: defense response, incompatible interaction	7.76E-03
89	GO:0006801: superoxide metabolic process	7.76E-03
90	GO:0009926: auxin polar transport	7.76E-03
91	GO:0030003: cellular cation homeostasis	7.76E-03
92	GO:0009704: de-etiolation	7.76E-03
93	GO:0009416: response to light stimulus	8.09E-03
94	GO:0009735: response to cytokinin	8.36E-03
95	GO:0019252: starch biosynthetic process	8.51E-03
96	GO:0009073: aromatic amino acid family biosynthetic process	9.07E-03
97	GO:0009637: response to blue light	9.80E-03
98	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.12E-02
99	GO:0040007: growth	1.12E-02
100	GO:0010015: root morphogenesis	1.12E-02
101	GO:0015977: carbon fixation	1.12E-02
102	GO:0010114: response to red light	1.14E-02
103	GO:0080167: response to karrikin	1.24E-02
104	GO:0010218: response to far red light	1.30E-02
105	GO:0010466: negative regulation of peptidase activity	1.31E-02
106	GO:0009684: indoleacetic acid biosynthetic process	1.31E-02
107	GO:0009407: toxin catabolic process	1.31E-02
108	GO:0009832: plant-type cell wall biogenesis	1.31E-02
109	GO:0048481: plant ovule development	1.39E-02
110	GO:0006418: tRNA aminoacylation for protein translation	1.48E-02
111	GO:0048527: lateral root development	1.51E-02
112	GO:0009697: salicylic acid biosynthetic process	1.51E-02
113	GO:0009409: response to cold	1.66E-02
114	GO:0006414: translational elongation	1.68E-02
115	GO:0010228: vegetative to reproductive phase transition of meristem	2.10E-02
116	GO:0031408: oxylipin biosynthetic process	2.17E-02
117	GO:0022900: electron transport chain	2.22E-02
118	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.40E-02
119	GO:0015996: chlorophyll catabolic process	2.40E-02
120	GO:0010075: regulation of meristem growth	2.40E-02
121	GO:0042545: cell wall modification	2.65E-02
122	GO:0009657: plastid organization	2.91E-02
123	GO:0009664: plant-type cell wall organization	3.17E-02
124	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.17E-02
125	GO:0006417: regulation of translation	3.17E-02
126	GO:0010182: sugar mediated signaling pathway	3.73E-02
127	GO:0009817: defense response to fungus, incompatible interaction	4.02E-02
128	GO:0007017: microtubule-based process	4.62E-02
129	GO:0009793: embryo development ending in seed dormancy	4.63E-02
130	GO:0009853: photorespiration	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0031409: pigment binding	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
4	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
5	GO:0005504: fatty acid binding	0.00E+00
6	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
7	GO:0045550: geranylgeranyl reductase activity	0.00E+00
8	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
9	GO:0004802: transketolase activity	0.00E+00
10	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
11	GO:0003735: structural constituent of ribosome	3.89E-10
12	GO:0004828: serine-tRNA ligase activity	6.25E-04
13	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	6.25E-04
14	GO:0070402: NADPH binding	6.25E-04
15	GO:0034256: chlorophyll(ide) b reductase activity	6.25E-04
16	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.25E-04
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.44E-04
18	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.45E-03
19	GO:0045430: chalcone isomerase activity	1.45E-03
20	GO:0004605: phosphatidate cytidylyltransferase activity	1.45E-03
21	GO:0033897: ribonuclease T2 activity	2.39E-03
22	GO:0016872: intramolecular lyase activity	2.39E-03
23	GO:0016168: chlorophyll binding	3.41E-03
24	GO:0071949: FAD binding	3.53E-03
25	GO:0004659: prenyltransferase activity	3.53E-03
26	GO:0004765: shikimate kinase activity	3.53E-03
27	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.53E-03
28	GO:0016984: ribulose-bisphosphate carboxylase activity	3.53E-03
29	GO:0051537: 2 iron, 2 sulfur cluster binding	4.81E-03
30	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.81E-03
31	GO:0009055: electron carrier activity	6.89E-03
32	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.36E-03
33	GO:0004784: superoxide dismutase activity	9.42E-03
34	GO:0008312: 7S RNA binding	9.42E-03
35	GO:0004869: cysteine-type endopeptidase inhibitor activity	9.42E-03
36	GO:0003723: RNA binding	1.02E-02
37	GO:0004427: inorganic diphosphatase activity	1.12E-02
38	GO:0003746: translation elongation factor activity	1.22E-02
39	GO:0030414: peptidase inhibitor activity	1.31E-02
40	GO:0000049: tRNA binding	1.31E-02
41	GO:0004812: aminoacyl-tRNA ligase activity	1.68E-02
42	GO:0016760: cellulose synthase (UDP-forming) activity	2.40E-02
43	GO:0019901: protein kinase binding	2.65E-02
44	GO:0015035: protein disulfide oxidoreductase activity	3.11E-02
45	GO:0051536: iron-sulfur cluster binding	3.55E-02
46	GO:0031072: heat shock protein binding	4.02E-02
47	GO:0019843: rRNA binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0009507: chloroplast	3.76E-39
3	GO:0009570: chloroplast stroma	1.66E-28
4	GO:0009941: chloroplast envelope	5.01E-18
5	GO:0009535: chloroplast thylakoid membrane	2.09E-16
6	GO:0005840: ribosome	5.40E-13
7	GO:0009579: thylakoid	6.13E-12
8	GO:0009543: chloroplast thylakoid lumen	1.40E-09
9	GO:0009534: chloroplast thylakoid	3.17E-06
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.22E-06
11	GO:0030529: intracellular ribonucleoprotein complex	1.33E-05
12	GO:0031977: thylakoid lumen	1.43E-05
13	GO:0005622: intracellular	2.12E-05
14	GO:0009527: plastid outer membrane	6.25E-04
15	GO:0009528: plastid inner membrane	6.25E-04
16	GO:0000311: plastid large ribosomal subunit	6.25E-04
17	GO:0009523: photosystem II	1.07E-03
18	GO:0009295: nucleoid	1.42E-03
19	GO:0055028: cortical microtubule	2.39E-03
20	GO:0009508: plastid chromosome	4.81E-03
21	GO:0048500: signal recognition particle	7.76E-03
22	GO:0009532: plastid stroma	9.42E-03
23	GO:0015934: large ribosomal subunit	1.14E-02
24	GO:0042651: thylakoid membrane	2.17E-02
25	GO:0009522: photosystem I	3.73E-02