Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G132116

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043137: DNA replication, removal of RNA primer0.00E+00
2GO:0042276: error-prone translesion synthesis0.00E+00
3GO:0030261: chromosome condensation0.00E+00
4GO:0031508: pericentric heterochromatin assembly0.00E+00
5GO:0006268: DNA unwinding involved in DNA replication0.00E+00
6GO:0032465: regulation of cytokinesis0.00E+00
7GO:0010425: DNA methylation on cytosine within a CNG sequence0.00E+00
8GO:0032776: DNA methylation on cytosine0.00E+00
9GO:0006260: DNA replication1.07E-13
10GO:0007049: cell cycle2.53E-09
11GO:0007018: microtubule-based movement9.73E-08
12GO:0016572: histone phosphorylation2.54E-07
13GO:0051301: cell division1.51E-06
14GO:0006275: regulation of DNA replication1.84E-06
15GO:0032508: DNA duplex unwinding1.84E-06
16GO:0006270: DNA replication initiation2.32E-06
17GO:0000911: cytokinesis by cell plate formation9.22E-06
18GO:0010069: zygote asymmetric cytokinesis in embryo sac9.62E-06
19GO:0043987: histone H3-S10 phosphorylation9.62E-06
20GO:0045814: negative regulation of gene expression, epigenetic9.62E-06
21GO:0051567: histone H3-K9 methylation1.09E-05
22GO:0006306: DNA methylation1.50E-05
23GO:0006342: chromatin silencing1.79E-05
24GO:0006259: DNA metabolic process3.86E-05
25GO:0000226: microtubule cytoskeleton organization5.24E-05
26GO:0051225: spindle assembly5.33E-05
27GO:0010389: regulation of G2/M transition of mitotic cell cycle7.11E-05
28GO:0090116: C-5 methylation of cytosine7.69E-05
29GO:0051726: regulation of cell cycle9.73E-05
30GO:0006265: DNA topological change1.38E-04
31GO:0006084: acetyl-CoA metabolic process3.20E-04
32GO:0010583: response to cyclopentenone3.20E-04
33GO:0006281: DNA repair4.72E-04
34GO:1990426: mitotic recombination-dependent replication fork processing5.25E-04
35GO:0009652: thigmotropism5.25E-04
36GO:0009971: anastral spindle assembly involved in male meiosis5.25E-04
37GO:0007059: chromosome segregation5.25E-04
38GO:0009909: regulation of flower development1.02E-03
39GO:0009956: radial pattern formation1.22E-03
40GO:0009186: deoxyribonucleoside diphosphate metabolic process1.22E-03
41GO:0009755: hormone-mediated signaling pathway1.22E-03
42GO:0009294: DNA mediated transformation1.80E-03
43GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.80E-03
44GO:0009957: epidermal cell fate specification2.03E-03
45GO:0022904: respiratory electron transport chain2.03E-03
46GO:0007062: sister chromatid cohesion2.07E-03
47GO:0008283: cell proliferation2.37E-03
48GO:0006310: DNA recombination2.65E-03
49GO:0009966: regulation of signal transduction2.65E-03
50GO:0008356: asymmetric cell division2.96E-03
51GO:0032147: activation of protein kinase activity2.96E-03
52GO:0010082: regulation of root meristem growth4.05E-03
53GO:0060236: regulation of mitotic spindle organization4.05E-03
54GO:0032875: regulation of DNA endoreduplication4.05E-03
55GO:0010087: phloem or xylem histogenesis5.23E-03
56GO:0051276: chromosome organization5.23E-03
57GO:0006325: chromatin organization6.52E-03
58GO:0055072: iron ion homeostasis6.52E-03
59GO:0009934: regulation of meristem structural organization6.52E-03
60GO:0048449: floral organ formation7.91E-03
61GO:0010074: maintenance of meristem identity7.91E-03
62GO:0006302: double-strand break repair9.41E-03
63GO:0061025: membrane fusion9.41E-03
64GO:0090305: nucleic acid phosphodiester bond hydrolysis9.41E-03
65GO:0042127: regulation of cell proliferation1.10E-02
66GO:0016570: histone modification1.26E-02
67GO:0048453: sepal formation1.26E-02
68GO:0010048: vernalization response1.26E-02
69GO:0006284: base-excision repair1.26E-02
70GO:0012501: programmed cell death1.26E-02
71GO:0009958: positive gravitropism1.26E-02
72GO:0006974: cellular response to DNA damage stimulus1.44E-02
73GO:0019915: lipid storage1.44E-02
74GO:0048451: petal formation1.44E-02
75GO:0016571: histone methylation1.62E-02
76GO:0009165: nucleotide biosynthetic process1.62E-02
77GO:0010332: response to gamma radiation1.62E-02
78GO:0007034: vacuolar transport1.62E-02
79GO:0010228: vegetative to reproductive phase transition of meristem1.64E-02
80GO:0048316: seed development1.82E-02
81GO:0006406: mRNA export from nucleus1.82E-02
82GO:0010162: seed dormancy process2.02E-02
83GO:0050826: response to freezing2.22E-02
84GO:0016126: sterol biosynthetic process2.44E-02
85GO:0000724: double-strand break repair via homologous recombination2.44E-02
86GO:0006396: RNA processing2.65E-02
87GO:0044267: cellular protein metabolic process2.66E-02
88GO:0010182: sugar mediated signaling pathway3.12E-02
89GO:0051258: protein polymerization3.37E-02
90GO:0000278: mitotic cell cycle3.37E-02
91GO:0009553: embryo sac development3.37E-02
92GO:0007017: microtubule-based process3.87E-02
93GO:0009845: seed germination3.87E-02
94GO:0031047: gene silencing by RNA4.14E-02
95GO:0009933: meristem structural organization4.40E-02
RankGO TermAdjusted P value
1GO:0008409: 5'-3' exonuclease activity0.00E+00
2GO:0030337: DNA polymerase processivity factor activity0.00E+00
3GO:0008017: microtubule binding3.10E-08
4GO:0003777: microtubule motor activity9.73E-08
5GO:0003678: DNA helicase activity7.59E-07
6GO:0035175: histone kinase activity (H3-S10 specific)9.62E-06
7GO:0008569: ATP-dependent microtubule motor activity, minus-end-directed9.62E-06
8GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor3.43E-05
9GO:0003886: DNA (cytosine-5-)-methyltransferase activity7.69E-05
10GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.69E-05
11GO:0004693: cyclin-dependent protein serine/threonine kinase activity5.25E-04
12GO:0010428: methyl-CpNpG binding5.25E-04
13GO:0010429: methyl-CpNpN binding5.25E-04
14GO:0017108: 5'-flap endonuclease activity5.25E-04
15GO:0000150: recombinase activity5.25E-04
16GO:0003916: DNA topoisomerase activity5.25E-04
17GO:0008327: methyl-CpG binding5.25E-04
18GO:0005524: ATP binding6.20E-04
19GO:0003677: DNA binding1.75E-03
20GO:0010385: double-stranded methylated DNA binding2.03E-03
21GO:0019901: protein kinase binding2.07E-03
22GO:0008094: DNA-dependent ATPase activity7.91E-03
23GO:0046914: transition metal ion binding1.26E-02
24GO:0004518: nuclease activity1.26E-02
25GO:0005484: SNAP receptor activity1.26E-02
26GO:0003684: damaged DNA binding1.26E-02
27GO:0003697: single-stranded DNA binding1.44E-02
28GO:0003690: double-stranded DNA binding1.44E-02
29GO:0000166: nucleotide binding1.55E-02
30GO:0004519: endonuclease activity1.62E-02
31GO:0004527: exonuclease activity2.02E-02
32GO:0016651: oxidoreductase activity, acting on NAD(P)H2.22E-02
33GO:0005200: structural constituent of cytoskeleton2.89E-02
34GO:0042393: histone binding3.62E-02
35GO:0051082: unfolded protein binding4.81E-02
RankGO TermAdjusted P value
1GO:0000307: cyclin-dependent protein kinase holoenzyme complex0.00E+00
2GO:0043626: PCNA complex0.00E+00
3GO:0033095: aleurone grain0.00E+00
4GO:0005874: microtubule8.95E-09
5GO:0005871: kinesin complex8.03E-08
6GO:0042555: MCM complex2.54E-07
7GO:0005875: microtubule associated complex5.34E-06
8GO:0005819: spindle1.96E-05
9GO:0005971: ribonucleoside-diphosphate reductase complex3.43E-05
10GO:0005876: spindle microtubule7.69E-05
11GO:0005634: nucleus3.66E-04
12GO:0010369: chromocenter5.25E-04
13GO:0000815: ESCRT III complex5.25E-04
14GO:0000347: THO complex5.25E-04
15GO:0009524: phragmoplast8.55E-04
16GO:0000775: chromosome, centromeric region2.03E-03
17GO:0005815: microtubule organizing center2.03E-03
18GO:0005694: chromosome3.37E-03
19GO:0010005: cortical microtubule, transverse to long axis5.23E-03
20GO:0009574: preprophase band5.23E-03
21GO:0012505: endomembrane system6.52E-03
22GO:0016272: prefoldin complex7.91E-03
23GO:0016604: nuclear body7.91E-03
24GO:0005730: nucleolus9.13E-03
25GO:0009504: cell plate2.44E-02
26GO:0005654: nucleoplasm2.66E-02
27GO:0031966: mitochondrial membrane2.66E-02
28GO:0019013: viral nucleocapsid3.12E-02
29GO:0043234: protein complex3.62E-02
30GO:0005635: nuclear envelope3.87E-02