co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G129987

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043987: histone H3-S10 phosphorylation	0.00E+00
2	GO:0080120: CAAX-box protein maturation	0.00E+00
3	GO:0031508: pericentric heterochromatin assembly	0.00E+00
4	GO:0032465: regulation of cytokinesis	0.00E+00
5	GO:0045732: positive regulation of protein catabolic process	0.00E+00
6	GO:0032776: DNA methylation on cytosine	0.00E+00
7	GO:0043137: DNA replication, removal of RNA primer	0.00E+00
8	GO:0071586: CAAX-box protein processing	0.00E+00
9	GO:0006260: DNA replication	6.31E-12
10	GO:0007049: cell cycle	1.78E-08
11	GO:0006342: chromatin silencing	7.63E-08
12	GO:0016572: histone phosphorylation	7.63E-08
13	GO:0010389: regulation of G2/M transition of mitotic cell cycle	5.60E-07
14	GO:0051301: cell division	7.05E-06
15	GO:0006275: regulation of DNA replication	1.46E-05
16	GO:0006270: DNA replication initiation	1.75E-05
17	GO:0032508: DNA duplex unwinding	2.99E-05
18	GO:0009909: regulation of flower development	4.02E-05
19	GO:0051567: histone H3-K9 methylation	5.92E-05
20	GO:0006306: DNA methylation	7.57E-05
21	GO:0009966: regulation of signal transduction	9.68E-05
22	GO:0000226: microtubule cytoskeleton organization	3.26E-04
23	GO:0042276: error-prone translesion synthesis	3.58E-04
24	GO:1990426: mitotic recombination-dependent replication fork processing	3.58E-04
25	GO:0009556: microsporogenesis	3.58E-04
26	GO:0045292: mRNA cis splicing, via spliceosome	3.58E-04
27	GO:0048574: long-day photoperiodism, flowering	3.58E-04
28	GO:0010425: DNA methylation on cytosine within a CNG sequence	3.58E-04
29	GO:0007059: chromosome segregation	3.58E-04
30	GO:0051028: mRNA transport	3.58E-04
31	GO:0006259: DNA metabolic process	5.20E-04
32	GO:0048453: sepal formation	5.20E-04
33	GO:0019915: lipid storage	6.34E-04
34	GO:0048451: petal formation	6.34E-04
35	GO:0009755: hormone-mediated signaling pathway	8.41E-04
36	GO:0046621: negative regulation of organ growth	8.41E-04
37	GO:0018279: protein N-linked glycosylation via asparagine	8.41E-04
38	GO:0045814: negative regulation of gene expression, epigenetic	8.41E-04
39	GO:0010069: zygote asymmetric cytokinesis in embryo sac	8.41E-04
40	GO:0009186: deoxyribonucleoside diphosphate metabolic process	8.41E-04
41	GO:0009294: DNA mediated transformation	1.05E-03
42	GO:0010162: seed dormancy process	1.05E-03
43	GO:0006281: DNA repair	1.11E-03
44	GO:0050826: response to freezing	1.22E-03
45	GO:0007018: microtubule-based movement	1.38E-03
46	GO:0009957: epidermal cell fate specification	1.42E-03
47	GO:0006333: chromatin assembly or disassembly	1.42E-03
48	GO:0007094: mitotic spindle assembly checkpoint	1.42E-03
49	GO:0022904: respiratory electron transport chain	1.42E-03
50	GO:0007276: gamete generation	1.42E-03
51	GO:0010182: sugar mediated signaling pathway	1.98E-03
52	GO:0032147: activation of protein kinase activity	2.07E-03
53	GO:0090116: C-5 methylation of cytosine	2.07E-03
54	GO:0031053: primary miRNA processing	2.07E-03
55	GO:0009845: seed germination	2.65E-03
56	GO:0060236: regulation of mitotic spindle organization	2.77E-03
57	GO:0032875: regulation of DNA endoreduplication	2.77E-03
58	GO:0006265: DNA topological change	2.77E-03
59	GO:0009933: meristem structural organization	3.18E-03
60	GO:0007267: cell-cell signaling	3.60E-03
61	GO:0051302: regulation of cell division	3.60E-03
62	GO:0006325: chromatin organization	4.50E-03
63	GO:0006366: transcription from RNA polymerase II promoter	4.50E-03
64	GO:0009934: regulation of meristem structural organization	4.50E-03
65	GO:0051510: regulation of unidimensional cell growth	4.50E-03
66	GO:0051726: regulation of cell cycle	4.78E-03
67	GO:0048449: floral organ formation	5.43E-03
68	GO:0010074: maintenance of meristem identity	5.43E-03
69	GO:0000911: cytokinesis by cell plate formation	5.89E-03
70	GO:0006302: double-strand break repair	6.45E-03
71	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.45E-03
72	GO:0009640: photomorphogenesis	6.72E-03
73	GO:0009955: adaxial/abaxial pattern specification	7.53E-03
74	GO:0006284: base-excision repair	8.66E-03
75	GO:0012501: programmed cell death	8.66E-03
76	GO:0016070: RNA metabolic process	8.66E-03
77	GO:0009616: virus induced gene silencing	8.66E-03
78	GO:0016570: histone modification	8.66E-03
79	GO:0010048: vernalization response	8.66E-03
80	GO:0008283: cell proliferation	9.03E-03
81	GO:0010228: vegetative to reproductive phase transition of meristem	9.54E-03
82	GO:0006974: cellular response to DNA damage stimulus	9.86E-03
83	GO:0016571: histone methylation	1.11E-02
84	GO:0010332: response to gamma radiation	1.11E-02
85	GO:0048316: seed development	1.24E-02
86	GO:0006487: protein N-linked glycosylation	1.24E-02
87	GO:0006406: mRNA export from nucleus	1.24E-02
88	GO:0009555: pollen development	1.29E-02
89	GO:0006446: regulation of translational initiation	1.38E-02
90	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.38E-02
91	GO:0016049: cell growth	1.52E-02
92	GO:0001731: formation of translation preinitiation complex	1.52E-02
93	GO:0007062: sister chromatid cohesion	1.52E-02
94	GO:0000902: cell morphogenesis	1.66E-02
95	GO:0000724: double-strand break repair via homologous recombination	1.66E-02
96	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.81E-02
97	GO:0010267: production of ta-siRNAs involved in RNA interference	1.81E-02
98	GO:0006310: DNA recombination	1.81E-02
99	GO:0000278: mitotic cell cycle	2.29E-02
100	GO:0009553: embryo sac development	2.29E-02
101	GO:0031047: gene silencing by RNA	2.82E-02
102	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	2.82E-02
103	GO:0016567: protein ubiquitination	3.30E-02
104	GO:0048193: Golgi vesicle transport	3.38E-02
105	GO:0016579: protein deubiquitination	3.57E-02
106	GO:0048366: leaf development	3.77E-02
107	GO:0009086: methionine biosynthetic process	3.77E-02
108	GO:0048481: plant ovule development	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0035175: histone kinase activity (H3-S10 specific)	0.00E+00
2	GO:0010997: anaphase-promoting complex binding	0.00E+00
3	GO:0008409: 5'-3' exonuclease activity	0.00E+00
4	GO:0003678: DNA helicase activity	1.58E-05
5	GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	1.75E-05
6	GO:0010429: methyl-CpNpN binding	3.58E-04
7	GO:0017108: 5'-flap endonuclease activity	3.58E-04
8	GO:0000150: recombinase activity	3.58E-04
9	GO:0003916: DNA topoisomerase activity	3.58E-04
10	GO:0030337: DNA polymerase processivity factor activity	3.58E-04
11	GO:0008327: methyl-CpG binding	3.58E-04
12	GO:0019905: syntaxin binding	3.58E-04
13	GO:0000339: RNA cap binding	3.58E-04
14	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.58E-04
15	GO:0010428: methyl-CpNpG binding	3.58E-04
16	GO:0008017: microtubule binding	3.63E-04
17	GO:0008569: ATP-dependent microtubule motor activity, minus-end-directed	8.41E-04
18	GO:0003688: DNA replication origin binding	8.41E-04
19	GO:0003777: microtubule motor activity	1.38E-03
20	GO:0010385: double-stranded methylated DNA binding	1.42E-03
21	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	2.07E-03
22	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.07E-03
23	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.77E-03
24	GO:0003713: transcription coactivator activity	3.60E-03
25	GO:0005524: ATP binding	4.91E-03
26	GO:0043022: ribosome binding	5.43E-03
27	GO:0008094: DNA-dependent ATPase activity	5.43E-03
28	GO:0003677: DNA binding	6.63E-03
29	GO:0004518: nuclease activity	8.66E-03
30	GO:0008237: metallopeptidase activity	8.66E-03
31	GO:0003684: damaged DNA binding	8.66E-03
32	GO:0046914: transition metal ion binding	8.66E-03
33	GO:0003697: single-stranded DNA binding	9.86E-03
34	GO:0003690: double-stranded DNA binding	9.86E-03
35	GO:0004519: endonuclease activity	1.11E-02
36	GO:0004527: exonuclease activity	1.38E-02
37	GO:0016651: oxidoreductase activity, acting on NAD(P)H	1.52E-02
38	GO:0019901: protein kinase binding	1.52E-02
39	GO:0042393: histone binding	2.46E-02
40	GO:0004222: metalloendopeptidase activity	2.64E-02
41	GO:0004175: endopeptidase activity	2.64E-02
42	GO:0003682: chromatin binding	3.72E-02
43	GO:0004674: protein serine/threonine kinase activity	4.73E-02
44	GO:0016772: transferase activity, transferring phosphorus-containing groups	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0019866: organelle inner membrane	0.00E+00
2	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	0.00E+00
3	GO:0005819: spindle	6.35E-06
4	GO:0042555: MCM complex	7.19E-06
5	GO:0005971: ribonucleoside-diphosphate reductase complex	1.75E-05
6	GO:0043626: PCNA complex	3.58E-04
7	GO:0005846: nuclear cap binding complex	3.58E-04
8	GO:0010369: chromocenter	3.58E-04
9	GO:0005634: nucleus	4.54E-04
10	GO:0005874: microtubule	7.27E-04
11	GO:0008250: oligosaccharyltransferase complex	8.41E-04
12	GO:0005871: kinesin complex	1.28E-03
13	GO:0000808: origin recognition complex	1.42E-03
14	GO:0000775: chromosome, centromeric region	1.42E-03
15	GO:0000776: kinetochore	2.07E-03
16	GO:0005875: microtubule associated complex	4.78E-03
17	GO:0033290: eukaryotic 48S preinitiation complex	1.52E-02
18	GO:0016282: eukaryotic 43S preinitiation complex	1.52E-02
19	GO:0005852: eukaryotic translation initiation factor 3 complex	1.66E-02
20	GO:0005654: nucleoplasm	1.81E-02
21	GO:0031966: mitochondrial membrane	1.81E-02
22	GO:0005635: nuclear envelope	2.64E-02
23	GO:0009524: phragmoplast	3.57E-02
24	GO:0005694: chromosome	3.93E-02
25	GO:0005783: endoplasmic reticulum	4.19E-02