co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G127609

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
2	GO:0042780: tRNA 3'-end processing	0.00E+00
3	GO:1900865: chloroplast RNA modification	0.00E+00
4	GO:0010157: response to chlorate	0.00E+00
5	GO:0043686: co-translational protein modification	0.00E+00
6	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
7	GO:0090391: granum assembly	0.00E+00
8	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
9	GO:0043953: protein transport by the Tat complex	0.00E+00
10	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
11	GO:0032543: mitochondrial translation	0.00E+00
12	GO:0046506: sulfolipid biosynthetic process	0.00E+00
13	GO:0010117: photoprotection	0.00E+00
14	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
15	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
16	GO:0009658: chloroplast organization	2.05E-14
17	GO:0006457: protein folding	3.00E-09
18	GO:0042793: transcription from plastid promoter	9.08E-09
19	GO:0006364: rRNA processing	2.24E-08
20	GO:0006779: porphyrin-containing compound biosynthetic process	1.64E-07
21	GO:0045893: positive regulation of transcription, DNA-templated	4.94E-07
22	GO:0009902: chloroplast relocation	7.29E-07
23	GO:0006399: tRNA metabolic process	8.40E-07
24	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.10E-06
25	GO:0010027: thylakoid membrane organization	1.33E-05
26	GO:1901671: positive regulation of superoxide dismutase activity	2.79E-05
27	GO:0035304: regulation of protein dephosphorylation	8.40E-05
28	GO:0045038: protein import into chloroplast thylakoid membrane	2.03E-04
29	GO:0006782: protoporphyrinogen IX biosynthetic process	2.03E-04
30	GO:0045037: protein import into chloroplast stroma	2.03E-04
31	GO:0006353: DNA-templated transcription, termination	2.03E-04
32	GO:0045036: protein targeting to chloroplast	2.54E-04
33	GO:0006655: phosphatidylglycerol biosynthetic process	3.22E-04
34	GO:0010468: regulation of gene expression	3.52E-04
35	GO:0010207: photosystem II assembly	3.82E-04
36	GO:0019344: cysteine biosynthetic process	3.87E-04
37	GO:0009306: protein secretion	5.42E-04
38	GO:0033014: tetrapyrrole biosynthetic process	7.72E-04
39	GO:0010206: photosystem II repair	7.72E-04
40	GO:0019538: protein metabolic process	7.72E-04
41	GO:0006429: leucyl-tRNA aminoacylation	9.48E-04
42	GO:0006788: heme oxidation	9.48E-04
43	GO:0015995: chlorophyll biosynthetic process	1.27E-03
44	GO:0010024: phytochromobilin biosynthetic process	2.15E-03
45	GO:0009102: biotin biosynthetic process	2.15E-03
46	GO:0009642: response to light intensity	2.15E-03
47	GO:0010380: regulation of chlorophyll biosynthetic process	2.15E-03
48	GO:0019464: glycine decarboxylation via glycine cleavage system	2.15E-03
49	GO:0019481: L-alanine catabolic process, by transamination	2.15E-03
50	GO:0006508: proteolysis	2.40E-03
51	GO:0006546: glycine catabolic process	2.53E-03
52	GO:0009073: aromatic amino acid family biosynthetic process	2.53E-03
53	GO:0051607: defense response to virus	3.57E-03
54	GO:0000304: response to singlet oxygen	3.61E-03
55	GO:0006450: regulation of translational fidelity	3.61E-03
56	GO:0006733: oxidoreduction coenzyme metabolic process	3.61E-03
57	GO:0051085: chaperone mediated protein folding requiring cofactor	3.61E-03
58	GO:0016075: rRNA catabolic process	3.61E-03
59	GO:0009231: riboflavin biosynthetic process	3.61E-03
60	GO:0009247: glycolipid biosynthetic process	3.61E-03
61	GO:0015867: ATP transport	3.61E-03
62	GO:0008299: isoprenoid biosynthetic process	4.16E-03
63	GO:0009408: response to heat	4.82E-03
64	GO:0042026: protein refolding	5.33E-03
65	GO:0006165: nucleoside diphosphate phosphorylation	5.33E-03
66	GO:0006228: UTP biosynthetic process	5.33E-03
67	GO:0009117: nucleotide metabolic process	5.33E-03
68	GO:0019375: galactolipid biosynthetic process	5.33E-03
69	GO:0006183: GTP biosynthetic process	5.33E-03
70	GO:0006241: CTP biosynthetic process	5.33E-03
71	GO:0030154: cell differentiation	5.48E-03
72	GO:0010267: production of ta-siRNAs involved in RNA interference	6.22E-03
73	GO:0035196: production of miRNAs involved in gene silencing by miRNA	6.22E-03
74	GO:0044267: cellular protein metabolic process	6.22E-03
75	GO:0009627: systemic acquired resistance	7.01E-03
76	GO:0009308: amine metabolic process	7.29E-03
77	GO:0019748: secondary metabolic process	7.29E-03
78	GO:0006184: obsolete GTP catabolic process	8.60E-03
79	GO:0031347: regulation of defense response	9.45E-03
80	GO:0006749: glutathione metabolic process	9.45E-03
81	GO:0009108: coenzyme biosynthetic process	1.18E-02
82	GO:0006189: 'de novo' IMP biosynthetic process	1.18E-02
83	GO:0034660: ncRNA metabolic process	1.18E-02
84	GO:0009106: lipoate metabolic process	1.18E-02
85	GO:0032880: regulation of protein localization	1.18E-02
86	GO:0009704: de-etiolation	1.18E-02
87	GO:0006766: vitamin metabolic process	1.18E-02
88	GO:0009411: response to UV	1.18E-02
89	GO:0051604: protein maturation	1.43E-02
90	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.70E-02
91	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.70E-02
92	GO:0045087: innate immune response	1.70E-02
93	GO:0001666: response to hypoxia	1.70E-02
94	GO:0009585: red, far-red light phototransduction	1.70E-02
95	GO:0009407: toxin catabolic process	2.00E-02
96	GO:0000302: response to reactive oxygen species	2.00E-02
97	GO:0009058: biosynthetic process	2.15E-02
98	GO:0016226: iron-sulfur cluster assembly	2.22E-02
99	GO:0006950: response to stress	2.22E-02
100	GO:0016556: mRNA modification	2.30E-02
101	GO:0006098: pentose-phosphate shunt	2.42E-02
102	GO:0000023: maltose metabolic process	2.53E-02
103	GO:0031408: oxylipin biosynthetic process	3.31E-02
104	GO:0006636: unsaturated fatty acid biosynthetic process	3.68E-02
105	GO:0045454: cell redox homeostasis	3.93E-02
106	GO:0042545: cell wall modification	4.06E-02
107	GO:0006200: obsolete ATP catabolic process	4.24E-02
108	GO:0019684: photosynthesis, light reaction	4.45E-02
109	GO:0009965: leaf morphogenesis	4.45E-02
110	GO:0009657: plastid organization	4.45E-02
111	GO:0009409: response to cold	4.55E-02
112	GO:0016036: cellular response to phosphate starvation	4.86E-02
113	GO:0008219: cell death	4.86E-02
114	GO:0010155: regulation of proton transport	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
2	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
3	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
4	GO:0003919: FMN adenylyltransferase activity	0.00E+00
5	GO:0004076: biotin synthase activity	0.00E+00
6	GO:0046408: chlorophyll synthetase activity	0.00E+00
7	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
8	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
9	GO:0042586: peptide deformylase activity	0.00E+00
10	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
11	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
12	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
13	GO:0004252: serine-type endopeptidase activity	1.13E-06
14	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.79E-05
15	GO:0004853: uroporphyrinogen decarboxylase activity	2.79E-05
16	GO:0000774: adenyl-nucleotide exchange factor activity	9.45E-05
17	GO:0051082: unfolded protein binding	3.45E-04
18	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	7.72E-04
19	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	9.48E-04
20	GO:0004362: glutathione-disulfide reductase activity	9.48E-04
21	GO:0008146: sulfotransferase activity	9.48E-04
22	GO:0016851: magnesium chelatase activity	9.48E-04
23	GO:0004823: leucine-tRNA ligase activity	9.48E-04
24	GO:0051087: chaperone binding	1.05E-03
25	GO:0008233: peptidase activity	2.00E-03
26	GO:0046914: transition metal ion binding	2.11E-03
27	GO:0051920: peroxiredoxin activity	2.15E-03
28	GO:0016630: protochlorophyllide reductase activity	2.15E-03
29	GO:0047134: protein-disulfide reductase activity	2.15E-03
30	GO:0005347: ATP transmembrane transporter activity	2.15E-03
31	GO:0004392: heme oxygenase (decyclizing) activity	2.15E-03
32	GO:0003959: NADPH dehydrogenase activity	3.61E-03
33	GO:0016831: carboxy-lyase activity	4.80E-03
34	GO:0004550: nucleoside diphosphate kinase activity	5.33E-03
35	GO:0016209: antioxidant activity	5.33E-03
36	GO:0070569: uridylyltransferase activity	5.33E-03
37	GO:0004659: prenyltransferase activity	5.33E-03
38	GO:0004765: shikimate kinase activity	5.33E-03
39	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	5.33E-03
40	GO:0016987: sigma factor activity	7.29E-03
41	GO:0042803: protein homodimerization activity	8.65E-03
42	GO:0008565: protein transporter activity	8.75E-03
43	GO:0031072: heat shock protein binding	8.75E-03
44	GO:0008173: RNA methyltransferase activity	9.45E-03
45	GO:0004525: ribonuclease III activity	1.18E-02
46	GO:0008312: 7S RNA binding	1.43E-02
47	GO:0043022: ribosome binding	1.43E-02
48	GO:0008266: poly(U) RNA binding	1.70E-02
49	GO:0008236: serine-type peptidase activity	1.78E-02
50	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.00E-02
51	GO:0005525: GTP binding	2.10E-02
52	GO:0003690: double-stranded DNA binding	2.62E-02
53	GO:0005507: copper ion binding	3.15E-02
54	GO:0005524: ATP binding	3.61E-02
55	GO:0048038: quinone binding	3.68E-02
56	GO:0003924: GTPase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009526: plastid envelope	0.00E+00
3	GO:0042646: plastid nucleoid	0.00E+00
4	GO:0055035: plastid thylakoid membrane	0.00E+00
5	GO:0009507: chloroplast	6.14E-29
6	GO:0009941: chloroplast envelope	8.63E-21
7	GO:0009570: chloroplast stroma	1.95E-15
8	GO:0009532: plastid stroma	5.89E-11
9	GO:0009579: thylakoid	4.07E-08
10	GO:0009840: chloroplastic endopeptidase Clp complex	4.49E-08
11	GO:0009535: chloroplast thylakoid membrane	5.34E-08
12	GO:0009534: chloroplast thylakoid	1.76E-05
13	GO:0009536: plastid	8.27E-04
14	GO:0019867: outer membrane	9.48E-04
15	GO:0005960: glycine cleavage complex	9.48E-04
16	GO:0080085: signal recognition particle, chloroplast targeting	9.48E-04
17	GO:0005759: mitochondrial matrix	1.86E-03
18	GO:0009533: chloroplast stromal thylakoid	2.15E-03
19	GO:0010319: stromule	3.40E-03
20	GO:0042651: thylakoid membrane	3.57E-03
21	GO:0009707: chloroplast outer membrane	7.29E-03
22	GO:0019898: extrinsic component of membrane	9.45E-03
23	GO:0009706: chloroplast inner membrane	1.07E-02
24	GO:0009654: photosystem II oxygen evolving complex	1.18E-02
25	GO:0048500: signal recognition particle	1.18E-02
26	GO:0048046: apoplast	2.15E-02
27	GO:0009295: nucleoid	2.62E-02
28	GO:0005739: mitochondrion	2.82E-02