co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G125969

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
2	GO:1901671: positive regulation of superoxide dismutase activity	0.00E+00
3	GO:0010117: photoprotection	0.00E+00
4	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
5	GO:0090391: granum assembly	0.00E+00
6	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
7	GO:0009658: chloroplast organization	1.70E-09
8	GO:0006457: protein folding	1.03E-07
9	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.31E-06
10	GO:0042793: transcription from plastid promoter	4.38E-06
11	GO:0009902: chloroplast relocation	6.83E-05
12	GO:0006779: porphyrin-containing compound biosynthetic process	7.61E-05
13	GO:0045037: protein import into chloroplast stroma	1.00E-04
14	GO:0006353: DNA-templated transcription, termination	1.00E-04
15	GO:0019344: cysteine biosynthetic process	1.29E-04
16	GO:0045893: positive regulation of transcription, DNA-templated	1.41E-04
17	GO:0010027: thylakoid membrane organization	2.22E-04
18	GO:0033014: tetrapyrrole biosynthetic process	4.06E-04
19	GO:0010206: photosystem II repair	4.06E-04
20	GO:0019538: protein metabolic process	4.06E-04
21	GO:0035304: regulation of protein dephosphorylation	4.19E-04
22	GO:0015995: chlorophyll biosynthetic process	4.61E-04
23	GO:0032543: mitochondrial translation	6.15E-04
24	GO:0080141: regulation of jasmonic acid biosynthetic process	6.15E-04
25	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	6.15E-04
26	GO:0006430: lysyl-tRNA aminoacylation	6.15E-04
27	GO:0051512: positive regulation of unidimensional cell growth	6.15E-04
28	GO:0010587: miRNA catabolic process	6.15E-04
29	GO:0009968: negative regulation of signal transduction	6.15E-04
30	GO:0006788: heme oxidation	6.15E-04
31	GO:0043157: response to cation stress	6.15E-04
32	GO:0010207: photosystem II assembly	8.35E-04
33	GO:0006364: rRNA processing	1.14E-03
34	GO:0006508: proteolysis	1.24E-03
35	GO:0006546: glycine catabolic process	1.39E-03
36	GO:0019464: glycine decarboxylation via glycine cleavage system	1.42E-03
37	GO:0019481: L-alanine catabolic process, by transamination	1.42E-03
38	GO:0010024: phytochromobilin biosynthetic process	1.42E-03
39	GO:0009102: biotin biosynthetic process	1.42E-03
40	GO:0010380: regulation of chlorophyll biosynthetic process	1.42E-03
41	GO:0009409: response to cold	1.42E-03
42	GO:0009247: glycolipid biosynthetic process	2.36E-03
43	GO:0015867: ATP transport	2.36E-03
44	GO:0000304: response to singlet oxygen	2.36E-03
45	GO:0006571: tyrosine biosynthetic process	2.36E-03
46	GO:0006450: regulation of translational fidelity	2.36E-03
47	GO:0006733: oxidoreduction coenzyme metabolic process	2.36E-03
48	GO:0051085: chaperone mediated protein folding requiring cofactor	2.36E-03
49	GO:0016075: rRNA catabolic process	2.36E-03
50	GO:0030154: cell differentiation	2.93E-03
51	GO:0044267: cellular protein metabolic process	3.33E-03
52	GO:0006228: UTP biosynthetic process	3.48E-03
53	GO:0009117: nucleotide metabolic process	3.48E-03
54	GO:0019375: galactolipid biosynthetic process	3.48E-03
55	GO:0006183: GTP biosynthetic process	3.48E-03
56	GO:0006401: RNA catabolic process	3.48E-03
57	GO:0009098: leucine biosynthetic process	3.48E-03
58	GO:0006241: CTP biosynthetic process	3.48E-03
59	GO:0045038: protein import into chloroplast thylakoid membrane	3.48E-03
60	GO:0030259: lipid glycosylation	3.48E-03
61	GO:0042026: protein refolding	3.48E-03
62	GO:0006782: protoporphyrinogen IX biosynthetic process	3.48E-03
63	GO:0006165: nucleoside diphosphate phosphorylation	3.48E-03
64	GO:0006790: sulfur compound metabolic process	3.48E-03
65	GO:0009627: systemic acquired resistance	3.77E-03
66	GO:0009695: jasmonic acid biosynthetic process	4.70E-03
67	GO:0019748: secondary metabolic process	4.75E-03
68	GO:0010468: regulation of gene expression	4.75E-03
69	GO:0006081: cellular aldehyde metabolic process	4.75E-03
70	GO:0006749: glutathione metabolic process	6.13E-03
71	GO:0031347: regulation of defense response	6.13E-03
72	GO:0032880: regulation of protein localization	7.65E-03
73	GO:0006766: vitamin metabolic process	7.65E-03
74	GO:0009411: response to UV	7.65E-03
75	GO:0009108: coenzyme biosynthetic process	7.65E-03
76	GO:0006189: 'de novo' IMP biosynthetic process	7.65E-03
77	GO:0009106: lipoate metabolic process	7.65E-03
78	GO:0009073: aromatic amino acid family biosynthetic process	8.87E-03
79	GO:0009628: response to abiotic stimulus	9.28E-03
80	GO:0051604: protein maturation	9.28E-03
81	GO:0006399: tRNA metabolic process	9.28E-03
82	GO:0009082: branched-chain amino acid biosynthetic process	9.28E-03
83	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.10E-02
84	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.10E-02
85	GO:0045087: innate immune response	1.10E-02
86	GO:0001666: response to hypoxia	1.10E-02
87	GO:0009585: red, far-red light phototransduction	1.10E-02
88	GO:0009407: toxin catabolic process	1.29E-02
89	GO:0000302: response to reactive oxygen species	1.29E-02
90	GO:0006184: obsolete GTP catabolic process	1.55E-02
91	GO:0046854: phosphatidylinositol phosphorylation	1.91E-02
92	GO:0045036: protein targeting to chloroplast	1.91E-02
93	GO:0006655: phosphatidylglycerol biosynthetic process	2.13E-02
94	GO:0031408: oxylipin biosynthetic process	2.13E-02
95	GO:0051607: defense response to virus	2.13E-02
96	GO:0006636: unsaturated fatty acid biosynthetic process	2.37E-02
97	GO:0009965: leaf morphogenesis	2.40E-02
98	GO:0042545: cell wall modification	2.61E-02
99	GO:0019684: photosynthesis, light reaction	2.86E-02
100	GO:0010155: regulation of proton transport	3.13E-02
101	GO:0010267: production of ta-siRNAs involved in RNA interference	3.13E-02
102	GO:0035196: production of miRNAs involved in gene silencing by miRNA	3.13E-02
103	GO:0008219: cell death	3.13E-02
104	GO:0006396: RNA processing	3.33E-02
105	GO:0006352: DNA-templated transcription, initiation	3.39E-02
106	GO:0010103: stomatal complex morphogenesis	3.39E-02
107	GO:0046777: protein autophosphorylation	3.67E-02
108	GO:0009416: response to light stimulus	3.92E-02
109	GO:0009620: response to fungus	3.96E-02
110	GO:0009738: abscisic acid-activated signaling pathway	4.25E-02
111	GO:0042254: ribosome biogenesis	4.55E-02
112	GO:0009853: photorespiration	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
2	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
3	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
4	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
5	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
6	GO:0004076: biotin synthase activity	0.00E+00
7	GO:0046408: chlorophyll synthetase activity	0.00E+00
8	GO:0004252: serine-type endopeptidase activity	1.76E-06
9	GO:0000774: adenyl-nucleotide exchange factor activity	4.53E-05
10	GO:0046914: transition metal ion binding	5.55E-05
11	GO:0051087: chaperone binding	5.55E-04
12	GO:0004824: lysine-tRNA ligase activity	6.15E-04
13	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	6.15E-04
14	GO:0016851: magnesium chelatase activity	6.15E-04
15	GO:0003862: 3-isopropylmalate dehydrogenase activity	6.15E-04
16	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.15E-04
17	GO:0035250: UDP-galactosyltransferase activity	6.15E-04
18	GO:0004362: glutathione-disulfide reductase activity	6.15E-04
19	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	6.15E-04
20	GO:0031177: phosphopantetheine binding	6.15E-04
21	GO:0008194: UDP-glycosyltransferase activity	6.15E-04
22	GO:0004665: prephenate dehydrogenase (NADP+) activity	1.42E-03
23	GO:0019204: obsolete nucleotide phosphatase activity	1.42E-03
24	GO:0004853: uroporphyrinogen decarboxylase activity	1.42E-03
25	GO:0005347: ATP transmembrane transporter activity	1.42E-03
26	GO:0004392: heme oxygenase (decyclizing) activity	1.42E-03
27	GO:0051920: peroxiredoxin activity	1.42E-03
28	GO:0008977: prephenate dehydrogenase (NAD+) activity	1.42E-03
29	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.42E-03
30	GO:0008233: peptidase activity	1.91E-03
31	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	3.48E-03
32	GO:0004765: shikimate kinase activity	3.48E-03
33	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	3.48E-03
34	GO:0004550: nucleoside diphosphate kinase activity	3.48E-03
35	GO:0016209: antioxidant activity	3.48E-03
36	GO:0004659: prenyltransferase activity	3.48E-03
37	GO:0042803: protein homodimerization activity	3.92E-03
38	GO:0016987: sigma factor activity	4.75E-03
39	GO:0008173: RNA methyltransferase activity	6.13E-03
40	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	7.65E-03
41	GO:0004525: ribonuclease III activity	7.65E-03
42	GO:0008312: 7S RNA binding	9.28E-03
43	GO:0008236: serine-type peptidase activity	9.59E-03
44	GO:0005507: copper ion binding	1.09E-02
45	GO:0008266: poly(U) RNA binding	1.10E-02
46	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.29E-02
47	GO:0003690: double-stranded DNA binding	1.69E-02
48	GO:0048037: cofactor binding	1.69E-02
49	GO:0016831: carboxy-lyase activity	2.61E-02
50	GO:0005524: ATP binding	2.65E-02
51	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.86E-02
52	GO:0051287: NAD binding	3.33E-02
53	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	4.24E-02
54	GO:0019843: rRNA binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0055035: plastid thylakoid membrane	0.00E+00
2	GO:0009526: plastid envelope	0.00E+00
3	GO:0009507: chloroplast	2.63E-23
4	GO:0009941: chloroplast envelope	1.39E-21
5	GO:0009570: chloroplast stroma	6.59E-18
6	GO:0009532: plastid stroma	1.70E-09
7	GO:0009840: chloroplastic endopeptidase Clp complex	1.13E-08
8	GO:0009579: thylakoid	1.36E-07
9	GO:0009535: chloroplast thylakoid membrane	6.39E-07
10	GO:0009534: chloroplast thylakoid	4.59E-05
11	GO:0009536: plastid	1.44E-04
12	GO:0080085: signal recognition particle, chloroplast targeting	6.15E-04
13	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	6.15E-04
14	GO:0005960: glycine cleavage complex	6.15E-04
15	GO:0009706: chloroplast inner membrane	6.43E-04
16	GO:0009533: chloroplast stromal thylakoid	1.42E-03
17	GO:0010319: stromule	1.56E-03
18	GO:0048046: apoplast	1.93E-03
19	GO:0009707: chloroplast outer membrane	4.75E-03
20	GO:0005759: mitochondrial matrix	6.90E-03
21	GO:0048500: signal recognition particle	7.65E-03
22	GO:0042651: thylakoid membrane	2.13E-02
23	GO:0005737: cytoplasm	2.30E-02