co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G123407

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
2	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
3	GO:0043043: peptide biosynthetic process	0.00E+00
4	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
8	GO:0043953: protein transport by the Tat complex	0.00E+00
9	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
10	GO:1901259: chloroplast rRNA processing	0.00E+00
11	GO:0090342: regulation of cell aging	0.00E+00
12	GO:0010027: thylakoid membrane organization	3.27E-21
13	GO:0016226: iron-sulfur cluster assembly	7.80E-15
14	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.06E-14
15	GO:0006655: phosphatidylglycerol biosynthetic process	1.31E-09
16	GO:0045038: protein import into chloroplast thylakoid membrane	1.95E-09
17	GO:0009902: chloroplast relocation	2.96E-09
18	GO:0010207: photosystem II assembly	2.59E-08
19	GO:0042793: transcription from plastid promoter	8.87E-08
20	GO:0006364: rRNA processing	2.09E-07
21	GO:0009073: aromatic amino acid family biosynthetic process	2.51E-07
22	GO:0009658: chloroplast organization	1.20E-06
23	GO:0006418: tRNA aminoacylation for protein translation	1.20E-06
24	GO:0006098: pentose-phosphate shunt	4.31E-06
25	GO:0006636: unsaturated fatty acid biosynthetic process	6.19E-06
26	GO:0042372: phylloquinone biosynthetic process	1.28E-05
27	GO:0045893: positive regulation of transcription, DNA-templated	1.28E-05
28	GO:0048481: plant ovule development	1.91E-05
29	GO:0010103: stomatal complex morphogenesis	1.95E-05
30	GO:0035304: regulation of protein dephosphorylation	2.49E-05
31	GO:0009773: photosynthetic electron transport in photosystem I	2.49E-05
32	GO:0006733: oxidoreduction coenzyme metabolic process	4.53E-05
33	GO:0015995: chlorophyll biosynthetic process	4.59E-05
34	GO:0010228: vegetative to reproductive phase transition of meristem	5.23E-05
35	GO:0009117: nucleotide metabolic process	1.00E-04
36	GO:0045036: protein targeting to chloroplast	1.01E-04
37	GO:0019344: cysteine biosynthetic process	1.29E-04
38	GO:0006569: tryptophan catabolic process	1.79E-04
39	GO:0019748: secondary metabolic process	1.79E-04
40	GO:0000023: maltose metabolic process	2.47E-04
41	GO:0030154: cell differentiation	2.50E-04
42	GO:0009306: protein secretion	2.82E-04
43	GO:0034660: ncRNA metabolic process	4.06E-04
44	GO:0009106: lipoate metabolic process	4.06E-04
45	GO:0006766: vitamin metabolic process	4.06E-04
46	GO:0009108: coenzyme biosynthetic process	4.06E-04
47	GO:0006399: tRNA metabolic process	5.55E-04
48	GO:0043085: positive regulation of catalytic activity	6.03E-04
49	GO:0006200: obsolete ATP catabolic process	6.03E-04
50	GO:0006434: seryl-tRNA aminoacylation	6.15E-04
51	GO:0016050: vesicle organization	6.15E-04
52	GO:0006433: prolyl-tRNA aminoacylation	6.15E-04
53	GO:0032543: mitochondrial translation	6.15E-04
54	GO:0006423: cysteinyl-tRNA aminoacylation	6.15E-04
55	GO:0009069: serine family amino acid metabolic process	6.15E-04
56	GO:0071722: detoxification of arsenic-containing substance	6.15E-04
57	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	6.15E-04
58	GO:0009443: pyridoxal 5'-phosphate salvage	6.15E-04
59	GO:0009793: embryo development ending in seed dormancy	7.24E-04
60	GO:0009684: indoleacetic acid biosynthetic process	9.25E-04
61	GO:0016556: mRNA modification	1.15E-03
62	GO:0006546: glycine catabolic process	1.39E-03
63	GO:0006432: phenylalanyl-tRNA aminoacylation	1.42E-03
64	GO:0010109: regulation of photosynthesis	1.42E-03
65	GO:0010236: plastoquinone biosynthetic process	1.42E-03
66	GO:0032544: plastid translation	1.42E-03
67	GO:0019252: starch biosynthetic process	1.56E-03
68	GO:0007186: G-protein coupled receptor signaling pathway	2.36E-03
69	GO:0010731: protein glutathionylation	2.36E-03
70	GO:0043067: regulation of programmed cell death	2.36E-03
71	GO:0006414: translational elongation	2.54E-03
72	GO:0042545: cell wall modification	2.57E-03
73	GO:0019684: photosynthesis, light reaction	2.93E-03
74	GO:0071704: organic substance metabolic process	3.48E-03
75	GO:0051205: protein insertion into membrane	3.48E-03
76	GO:0045037: protein import into chloroplast stroma	3.48E-03
77	GO:0006353: DNA-templated transcription, termination	3.48E-03
78	GO:0009965: leaf morphogenesis	4.18E-03
79	GO:0009695: jasmonic acid biosynthetic process	4.70E-03
80	GO:0009308: amine metabolic process	4.75E-03
81	GO:0000096: sulfur amino acid metabolic process	4.75E-03
82	GO:0060416: response to growth hormone	4.75E-03
83	GO:0009772: photosynthetic electron transport in photosystem II	4.75E-03
84	GO:0009813: flavonoid biosynthetic process	4.75E-03
85	GO:0048229: gametophyte development	6.13E-03
86	GO:0007005: mitochondrion organization	6.13E-03
87	GO:0030003: cellular cation homeostasis	7.65E-03
88	GO:0009704: de-etiolation	7.65E-03
89	GO:0009814: defense response, incompatible interaction	7.65E-03
90	GO:0010583: response to cyclopentenone	7.65E-03
91	GO:0009735: response to cytokinin	8.19E-03
92	GO:0015693: magnesium ion transport	9.28E-03
93	GO:0043039: tRNA aminoacylation	9.28E-03
94	GO:0030245: cellulose catabolic process	9.28E-03
95	GO:0016117: carotenoid biosynthetic process	9.59E-03
96	GO:0019761: glucosinolate biosynthetic process	1.03E-02
97	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.10E-02
98	GO:0015979: photosynthesis	1.26E-02
99	GO:0009407: toxin catabolic process	1.29E-02
100	GO:0006354: DNA-templated transcription, elongation	1.49E-02
101	GO:0048527: lateral root development	1.49E-02
102	GO:0009697: salicylic acid biosynthetic process	1.49E-02
103	GO:0006184: obsolete GTP catabolic process	1.55E-02
104	GO:0006812: cation transport	1.95E-02
105	GO:0051607: defense response to virus	2.13E-02
106	GO:0048316: seed development	2.13E-02
107	GO:0008033: tRNA processing	2.13E-02
108	GO:0010197: polar nucleus fusion	2.37E-02
109	GO:0042742: defense response to bacterium	2.46E-02
110	GO:0009657: plastid organization	2.86E-02
111	GO:0006631: fatty acid metabolic process	2.86E-02
112	GO:0035196: production of miRNAs involved in gene silencing by miRNA	3.13E-02
113	GO:0006417: regulation of translation	3.13E-02
114	GO:0010267: production of ta-siRNAs involved in RNA interference	3.13E-02
115	GO:0006352: DNA-templated transcription, initiation	3.39E-02
116	GO:0010182: sugar mediated signaling pathway	3.67E-02
117	GO:0006869: lipid transport	3.96E-02
118	GO:0009553: embryo sac development	3.96E-02

Rank	GO Term	Adjusted P value
1	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0005504: fatty acid binding	0.00E+00
4	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
7	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
8	GO:0004812: aminoacyl-tRNA ligase activity	1.76E-06
9	GO:0004765: shikimate kinase activity	1.00E-04
10	GO:0004831: tyrosine-tRNA ligase activity	6.15E-04
11	GO:0070402: NADPH binding	6.15E-04
12	GO:0004817: cysteine-tRNA ligase activity	6.15E-04
13	GO:0004827: proline-tRNA ligase activity	6.15E-04
14	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	6.15E-04
15	GO:0045174: glutathione dehydrogenase (ascorbate) activity	6.15E-04
16	GO:0004828: serine-tRNA ligase activity	6.15E-04
17	GO:0000049: tRNA binding	9.25E-04
18	GO:0016887: ATPase activity	1.37E-03
19	GO:0045430: chalcone isomerase activity	1.42E-03
20	GO:0004826: phenylalanine-tRNA ligase activity	1.42E-03
21	GO:0003746: translation elongation factor activity	1.70E-03
22	GO:0016872: intramolecular lyase activity	2.36E-03
23	GO:0003913: DNA photolyase activity	3.48E-03
24	GO:0070569: uridylyltransferase activity	3.48E-03
25	GO:0004659: prenyltransferase activity	3.48E-03
26	GO:0016209: antioxidant activity	3.48E-03
27	GO:0031072: heat shock protein binding	4.70E-03
28	GO:0008565: protein transporter activity	4.70E-03
29	GO:0016868: intramolecular transferase activity, phosphotransferases	4.75E-03
30	GO:0016987: sigma factor activity	4.75E-03
31	GO:0008173: RNA methyltransferase activity	6.13E-03
32	GO:0008810: cellulase activity	7.65E-03
33	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	7.65E-03
34	GO:0008312: 7S RNA binding	9.28E-03
35	GO:0043022: ribosome binding	9.28E-03
36	GO:0008236: serine-type peptidase activity	9.59E-03
37	GO:0003723: RNA binding	9.78E-03
38	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.29E-02
39	GO:0015095: magnesium ion transmembrane transporter activity	1.29E-02
40	GO:0046873: metal ion transmembrane transporter activity	1.29E-02
41	GO:0051082: unfolded protein binding	1.37E-02
42	GO:0048038: quinone binding	2.37E-02
43	GO:0005216: ion channel activity	2.61E-02
44	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.86E-02
45	GO:0015035: protein disulfide oxidoreductase activity	3.05E-02
46	GO:0004252: serine-type endopeptidase activity	3.92E-02
47	GO:0004222: metalloendopeptidase activity	4.55E-02
48	GO:0005524: ATP binding	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.78E-28
2	GO:0009570: chloroplast stroma	6.59E-18
3	GO:0009535: chloroplast thylakoid membrane	8.46E-10
4	GO:0009941: chloroplast envelope	1.69E-07
5	GO:0009534: chloroplast thylakoid	2.98E-06
6	GO:0009295: nucleoid	7.61E-05
7	GO:0009532: plastid stroma	5.55E-04
8	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	6.15E-04
9	GO:0044445: cytosolic part	6.15E-04
10	GO:0080085: signal recognition particle, chloroplast targeting	6.15E-04
11	GO:0009528: plastid inner membrane	6.15E-04
12	GO:0009527: plastid outer membrane	6.15E-04
13	GO:0009543: chloroplast thylakoid lumen	1.94E-03
14	GO:0009840: chloroplastic endopeptidase Clp complex	4.75E-03
15	GO:0009508: plastid chromosome	4.75E-03
16	GO:0048500: signal recognition particle	7.65E-03
17	GO:0031977: thylakoid lumen	1.19E-02
18	GO:0042651: thylakoid membrane	2.13E-02
19	GO:0009579: thylakoid	2.28E-02
20	GO:0005840: ribosome	2.51E-02
21	GO:0019013: viral nucleocapsid	3.67E-02
22	GO:0009706: chloroplast inner membrane	4.55E-02