co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G122337

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035436: triose phosphate transmembrane transport	0.00E+00
2	GO:0015714: phosphoenolpyruvate transport	0.00E+00
3	GO:0030243: cellulose metabolic process	0.00E+00
4	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
5	GO:0051188: cofactor biosynthetic process	0.00E+00
6	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
7	GO:0042550: photosystem I stabilization	0.00E+00
8	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
9	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
10	GO:0010028: xanthophyll cycle	0.00E+00
11	GO:0019676: ammonia assimilation cycle	0.00E+00
12	GO:0015979: photosynthesis	4.54E-16
13	GO:0015995: chlorophyll biosynthetic process	3.97E-13
14	GO:0010207: photosystem II assembly	3.21E-12
15	GO:0006098: pentose-phosphate shunt	4.48E-12
16	GO:0016117: carotenoid biosynthetic process	1.35E-11
17	GO:0009773: photosynthetic electron transport in photosystem I	7.58E-10
18	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.06E-09
19	GO:0010027: thylakoid membrane organization	1.12E-08
20	GO:0043085: positive regulation of catalytic activity	2.23E-08
21	GO:0006364: rRNA processing	3.23E-08
22	GO:0000023: maltose metabolic process	1.62E-06
23	GO:0070838: divalent metal ion transport	3.02E-06
24	GO:0019252: starch biosynthetic process	3.51E-06
25	GO:0009902: chloroplast relocation	5.02E-06
26	GO:0009767: photosynthetic electron transport chain	6.24E-06
27	GO:0006636: unsaturated fatty acid biosynthetic process	8.77E-06
28	GO:0009637: response to blue light	1.18E-05
29	GO:0009108: coenzyme biosynthetic process	1.27E-05
30	GO:0009106: lipoate metabolic process	1.27E-05
31	GO:0030003: cellular cation homeostasis	1.27E-05
32	GO:0006766: vitamin metabolic process	1.27E-05
33	GO:0010114: response to red light	1.71E-05
34	GO:0010218: response to far red light	2.42E-05
35	GO:0010103: stomatal complex morphogenesis	2.74E-05
36	GO:0006814: sodium ion transport	7.23E-05
37	GO:0006546: glycine catabolic process	9.84E-05
38	GO:0019344: cysteine biosynthetic process	1.75E-04
39	GO:0019761: glucosinolate biosynthetic process	2.01E-04
40	GO:0000096: sulfur amino acid metabolic process	2.15E-04
41	GO:0009772: photosynthetic electron transport in photosystem II	2.15E-04
42	GO:0019748: secondary metabolic process	2.15E-04
43	GO:0009416: response to light stimulus	3.13E-04
44	GO:0010155: regulation of proton transport	3.80E-04
45	GO:0010206: photosystem II repair	4.84E-04
46	GO:0080167: response to karrikin	6.09E-04
47	GO:0015986: ATP synthesis coupled proton transport	6.12E-04
48	GO:0009695: jasmonic acid biosynthetic process	6.12E-04
49	GO:0022900: electron transport chain	7.26E-04
50	GO:0015977: carbon fixation	8.64E-04
51	GO:0009072: aromatic amino acid family metabolic process	8.64E-04
52	GO:0016556: mRNA modification	1.35E-03
53	GO:0044272: sulfur compound biosynthetic process	1.59E-03
54	GO:0006875: cellular metal ion homeostasis	1.59E-03
55	GO:0009765: photosynthesis, light harvesting	1.64E-03
56	GO:0042793: transcription from plastid promoter	2.27E-03
57	GO:0019760: glucosinolate metabolic process	2.64E-03
58	GO:0006733: oxidoreduction coenzyme metabolic process	2.64E-03
59	GO:0016024: CDP-diacylglycerol biosynthetic process	2.64E-03
60	GO:0022904: respiratory electron transport chain	2.64E-03
61	GO:0051289: protein homotetramerization	2.64E-03
62	GO:0009750: response to fructose	3.03E-03
63	GO:0006833: water transport	3.03E-03
64	GO:0019684: photosynthesis, light reaction	3.48E-03
65	GO:0030154: cell differentiation	3.48E-03
66	GO:0009657: plastid organization	3.48E-03
67	GO:0006014: D-ribose metabolic process	3.91E-03
68	GO:0010196: nonphotochemical quenching	3.91E-03
69	GO:0050821: protein stabilization	3.91E-03
70	GO:0016485: protein processing	3.91E-03
71	GO:0006782: protoporphyrinogen IX biosynthetic process	3.91E-03
72	GO:0019216: regulation of lipid metabolic process	3.91E-03
73	GO:0051260: protein homooligomerization	3.91E-03
74	GO:0009595: detection of biotic stimulus	3.91E-03
75	GO:0009117: nucleotide metabolic process	3.91E-03
76	GO:0045037: protein import into chloroplast stroma	3.91E-03
77	GO:0009624: response to nematode	3.95E-03
78	GO:0018298: protein-chromophore linkage	3.96E-03
79	GO:0009966: regulation of signal transduction	3.96E-03
80	GO:0009644: response to high light intensity	4.24E-03
81	GO:0046777: protein autophosphorylation	4.99E-03
82	GO:0006796: phosphate-containing compound metabolic process	5.31E-03
83	GO:0006569: tryptophan catabolic process	5.31E-03
84	GO:0009813: flavonoid biosynthetic process	5.31E-03
85	GO:0043900: regulation of multi-organism process	5.31E-03
86	GO:0034755: iron ion transmembrane transport	5.31E-03
87	GO:0007568: aging	5.31E-03
88	GO:0015994: chlorophyll metabolic process	5.31E-03
89	GO:0009409: response to cold	6.84E-03
90	GO:0006542: glutamine biosynthetic process	6.88E-03
91	GO:0006783: heme biosynthetic process	6.88E-03
92	GO:0006568: tryptophan metabolic process	6.88E-03
93	GO:0000413: protein peptidyl-prolyl isomerization	8.17E-03
94	GO:0033014: tetrapyrrole biosynthetic process	8.59E-03
95	GO:0034660: ncRNA metabolic process	8.59E-03
96	GO:0009411: response to UV	8.59E-03
97	GO:0010310: regulation of hydrogen peroxide metabolic process	1.04E-02
98	GO:0005985: sucrose metabolic process	1.04E-02
99	GO:0000162: tryptophan biosynthetic process	1.24E-02
100	GO:0009684: indoleacetic acid biosynthetic process	1.45E-02
101	GO:0009832: plant-type cell wall biogenesis	1.45E-02
102	GO:0006006: glucose metabolic process	1.67E-02
103	GO:0009697: salicylic acid biosynthetic process	1.67E-02
104	GO:0006754: ATP biosynthetic process	1.67E-02
105	GO:0006354: DNA-templated transcription, elongation	1.67E-02
106	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.90E-02
107	GO:0006779: porphyrin-containing compound biosynthetic process	1.90E-02
108	GO:0009744: response to sucrose	1.94E-02
109	GO:0046854: phosphatidylinositol phosphorylation	2.15E-02
110	GO:0045036: protein targeting to chloroplast	2.15E-02
111	GO:0055114: oxidation-reduction process	2.16E-02
112	GO:0008652: cellular amino acid biosynthetic process	2.30E-02
113	GO:0006096: glycolytic process	2.32E-02
114	GO:0006655: phosphatidylglycerol biosynthetic process	2.40E-02
115	GO:0031408: oxylipin biosynthetic process	2.40E-02
116	GO:0006108: malate metabolic process	2.40E-02
117	GO:0007030: Golgi organization	2.67E-02
118	GO:0009965: leaf morphogenesis	2.84E-02
119	GO:0016049: cell growth	2.94E-02
120	GO:0006972: hyperosmotic response	2.94E-02
121	GO:0015992: proton transport	3.22E-02
122	GO:0009749: response to glucose	3.22E-02
123	GO:0016126: sterol biosynthetic process	3.22E-02
124	GO:0006631: fatty acid metabolic process	3.22E-02
125	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.52E-02
126	GO:0045893: positive regulation of transcription, DNA-templated	3.76E-02
127	GO:0006612: protein targeting to membrane	3.82E-02
128	GO:0010200: response to chitin	3.82E-02
129	GO:0035304: regulation of protein dephosphorylation	4.14E-02
130	GO:0010363: regulation of plant-type hypersensitive response	4.14E-02
131	GO:0006807: nitrogen compound metabolic process	4.14E-02
132	GO:0010224: response to UV-B	4.14E-02
133	GO:0009867: jasmonic acid mediated signaling pathway	4.46E-02
134	GO:0009817: defense response to fungus, incompatible interaction	4.46E-02
135	GO:0031348: negative regulation of defense response	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
4	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
5	GO:0045550: geranylgeranyl reductase activity	0.00E+00
6	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
7	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
8	GO:0004802: transketolase activity	0.00E+00
9	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
10	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
11	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
12	GO:0051738: xanthophyll binding	0.00E+00
13	GO:0016168: chlorophyll binding	6.86E-07
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.08E-06
15	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.58E-05
16	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.84E-05
17	GO:0016984: ribulose-bisphosphate carboxylase activity	1.21E-04
18	GO:0009055: electron carrier activity	2.19E-04
19	GO:0051537: 2 iron, 2 sulfur cluster binding	6.12E-04
20	GO:0015140: malate transmembrane transporter activity	6.90E-04
21	GO:0008883: glutamyl-tRNA reductase activity	6.90E-04
22	GO:0004618: phosphoglycerate kinase activity	6.90E-04
23	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.90E-04
24	GO:0015088: copper uptake transmembrane transporter activity	6.90E-04
25	GO:0045430: chalcone isomerase activity	1.59E-03
26	GO:0004605: phosphatidate cytidylyltransferase activity	1.59E-03
27	GO:0051920: peroxiredoxin activity	1.59E-03
28	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.59E-03
29	GO:0033897: ribonuclease T2 activity	2.64E-03
30	GO:0016872: intramolecular lyase activity	2.64E-03
31	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	2.64E-03
32	GO:0016209: antioxidant activity	3.91E-03
33	GO:0071949: FAD binding	3.91E-03
34	GO:0004332: fructose-bisphosphate aldolase activity	3.91E-03
35	GO:0004747: ribokinase activity	3.91E-03
36	GO:0004765: shikimate kinase activity	3.91E-03
37	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.91E-03
38	GO:0004470: malic enzyme activity	5.31E-03
39	GO:0005381: iron ion transmembrane transporter activity	5.31E-03
40	GO:0004356: glutamate-ammonia ligase activity	6.88E-03
41	GO:0004834: tryptophan synthase activity	6.88E-03
42	GO:0051536: iron-sulfur cluster binding	8.32E-03
43	GO:0005215: transporter activity	8.38E-03
44	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	8.59E-03
45	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	8.59E-03
46	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.68E-03
47	GO:0004427: inorganic diphosphatase activity	1.24E-02
48	GO:0042578: phosphoric ester hydrolase activity	1.24E-02
49	GO:0000049: tRNA binding	1.45E-02
50	GO:0003690: double-stranded DNA binding	1.90E-02
51	GO:0050661: NADP binding	2.06E-02
52	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.67E-02
53	GO:0042803: protein homodimerization activity	2.70E-02
54	GO:0004713: protein tyrosine kinase activity	2.94E-02
55	GO:0008080: N-acetyltransferase activity	3.22E-02
56	GO:0051287: NAD binding	3.92E-02
57	GO:0005506: iron ion binding	4.61E-02
58	GO:0015078: hydrogen ion transmembrane transporter activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0030093: chloroplast photosystem I	0.00E+00
3	GO:0009507: chloroplast	5.74E-30
4	GO:0009535: chloroplast thylakoid membrane	3.05E-23
5	GO:0009941: chloroplast envelope	2.81E-18
6	GO:0009579: thylakoid	1.22E-17
7	GO:0009534: chloroplast thylakoid	1.40E-11
8	GO:0009543: chloroplast thylakoid lumen	2.66E-11
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.34E-10
10	GO:0009522: photosystem I	7.58E-10
11	GO:0009570: chloroplast stroma	2.69E-09
12	GO:0031977: thylakoid lumen	4.28E-08
13	GO:0009523: photosystem II	7.84E-06
14	GO:0010287: plastoglobule	6.73E-05
15	GO:0009538: photosystem I reaction center	1.21E-04
16	GO:0009508: plastid chromosome	2.15E-04
17	GO:0019898: extrinsic component of membrane	3.37E-04
18	GO:0009654: photosystem II oxygen evolving complex	4.84E-04
19	GO:0016020: membrane	5.65E-04
20	GO:0009517: PSII associated light-harvesting complex II	6.90E-04
21	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	6.90E-04
22	GO:0042406: extrinsic component of endoplasmic reticulum membrane	6.90E-04
23	GO:0009533: chloroplast stromal thylakoid	1.59E-03
24	GO:0009295: nucleoid	1.64E-03
25	GO:0010319: stromule	1.92E-03
26	GO:0042651: thylakoid membrane	2.27E-03
27	GO:0048046: apoplast	2.78E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	8.59E-03
29	GO:0009536: plastid	3.93E-02