co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G122327

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032544: plastid translation	0.00E+00
2	GO:0051188: cofactor biosynthetic process	0.00E+00
3	GO:0043043: peptide biosynthetic process	0.00E+00
4	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
5	GO:0009234: menaquinone biosynthetic process	0.00E+00
6	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
7	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
8	GO:0010028: xanthophyll cycle	0.00E+00
9	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.17E-19
10	GO:0010027: thylakoid membrane organization	2.03E-14
11	GO:0006412: translation	9.48E-13
12	GO:0006098: pentose-phosphate shunt	6.18E-11
13	GO:0015995: chlorophyll biosynthetic process	1.30E-10
14	GO:0016226: iron-sulfur cluster assembly	8.61E-09
15	GO:0010207: photosystem II assembly	1.67E-08
16	GO:0006364: rRNA processing	2.24E-08
17	GO:0000096: sulfur amino acid metabolic process	4.49E-08
18	GO:0045036: protein targeting to chloroplast	2.80E-07
19	GO:0009108: coenzyme biosynthetic process	3.87E-07
20	GO:0009106: lipoate metabolic process	3.87E-07
21	GO:0006766: vitamin metabolic process	3.87E-07
22	GO:0009902: chloroplast relocation	7.29E-07
23	GO:0019748: secondary metabolic process	6.56E-06
24	GO:0006546: glycine catabolic process	7.42E-06
25	GO:0006655: phosphatidylglycerol biosynthetic process	1.60E-05
26	GO:0042793: transcription from plastid promoter	1.60E-05
27	GO:0006636: unsaturated fatty acid biosynthetic process	2.24E-05
28	GO:0042372: phylloquinone biosynthetic process	2.79E-05
29	GO:0044272: sulfur compound biosynthetic process	2.79E-05
30	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.79E-05
31	GO:0016117: carotenoid biosynthetic process	3.50E-05
32	GO:0009072: aromatic amino acid family metabolic process	7.05E-05
33	GO:0006418: tRNA aminoacylation for protein translation	9.41E-05
34	GO:0009658: chloroplast organization	9.41E-05
35	GO:0006733: oxidoreduction coenzyme metabolic process	9.45E-05
36	GO:0009695: jasmonic acid biosynthetic process	1.04E-04
37	GO:0006354: DNA-templated transcription, elongation	1.44E-04
38	GO:0019216: regulation of lipid metabolic process	2.03E-04
39	GO:0009117: nucleotide metabolic process	2.03E-04
40	GO:0015979: photosynthesis	2.95E-04
41	GO:0009767: photosynthetic electron transport chain	3.22E-04
42	GO:0019684: photosynthesis, light reaction	5.91E-04
43	GO:0030154: cell differentiation	5.91E-04
44	GO:0048481: plant ovule development	7.00E-04
45	GO:0010155: regulation of proton transport	7.03E-04
46	GO:0010206: photosystem II repair	7.72E-04
47	GO:0034660: ncRNA metabolic process	7.72E-04
48	GO:0008361: regulation of cell size	9.48E-04
49	GO:0006434: seryl-tRNA aminoacylation	9.48E-04
50	GO:0006573: valine metabolic process	9.48E-04
51	GO:0006433: prolyl-tRNA aminoacylation	9.48E-04
52	GO:0032543: mitochondrial translation	9.48E-04
53	GO:0009768: photosynthesis, light harvesting in photosystem I	9.48E-04
54	GO:0009069: serine family amino acid metabolic process	9.48E-04
55	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	9.48E-04
56	GO:0019676: ammonia assimilation cycle	9.48E-04
57	GO:0009773: photosynthetic electron transport in photosystem I	9.68E-04
58	GO:0008652: cellular amino acid biosynthetic process	1.27E-03
59	GO:0010228: vegetative to reproductive phase transition of meristem	1.38E-03
60	GO:0016556: mRNA modification	2.11E-03
61	GO:0010236: plastoquinone biosynthetic process	2.15E-03
62	GO:0048653: anther development	2.15E-03
63	GO:0006432: phenylalanyl-tRNA aminoacylation	2.15E-03
64	GO:0010109: regulation of photosynthesis	2.15E-03
65	GO:0009073: aromatic amino acid family biosynthetic process	2.53E-03
66	GO:0009765: photosynthesis, light harvesting	2.53E-03
67	GO:0009637: response to blue light	2.79E-03
68	GO:0010114: response to red light	3.40E-03
69	GO:0031408: oxylipin biosynthetic process	3.57E-03
70	GO:0016024: CDP-diacylglycerol biosynthetic process	3.61E-03
71	GO:0009416: response to light stimulus	3.78E-03
72	GO:0010218: response to far red light	4.07E-03
73	GO:0006014: D-ribose metabolic process	5.33E-03
74	GO:0007389: pattern specification process	5.33E-03
75	GO:0009833: plant-type primary cell wall biogenesis	5.33E-03
76	GO:0010304: PSII associated light-harvesting complex II catabolic process	5.33E-03
77	GO:0006353: DNA-templated transcription, termination	5.33E-03
78	GO:0009657: plastid organization	5.48E-03
79	GO:0018298: protein-chromophore linkage	6.22E-03
80	GO:0010189: vitamin E biosynthetic process	7.29E-03
81	GO:0009308: amine metabolic process	7.29E-03
82	GO:0070838: divalent metal ion transport	7.29E-03
83	GO:0006796: phosphate-containing compound metabolic process	7.29E-03
84	GO:0006569: tryptophan catabolic process	7.29E-03
85	GO:0050790: regulation of catalytic activity	7.29E-03
86	GO:0009813: flavonoid biosynthetic process	7.29E-03
87	GO:0007568: aging	7.29E-03
88	GO:0015994: chlorophyll metabolic process	7.29E-03
89	GO:0035304: regulation of protein dephosphorylation	7.86E-03
90	GO:0009965: leaf morphogenesis	9.24E-03
91	GO:0009793: embryo development ending in seed dormancy	9.32E-03
92	GO:0007005: mitochondrion organization	9.45E-03
93	GO:0006542: glutamine biosynthetic process	9.45E-03
94	GO:0009814: defense response, incompatible interaction	1.18E-02
95	GO:0009926: auxin polar transport	1.18E-02
96	GO:0010205: photoinhibition	1.18E-02
97	GO:0030003: cellular cation homeostasis	1.18E-02
98	GO:0009411: response to UV	1.18E-02
99	GO:0000413: protein peptidyl-prolyl isomerization	1.29E-02
100	GO:0045893: positive regulation of transcription, DNA-templated	1.32E-02
101	GO:0043039: tRNA aminoacylation	1.43E-02
102	GO:0009735: response to cytokinin	1.52E-02
103	GO:0006662: glycerol ether metabolic process	1.65E-02
104	GO:0040007: growth	1.70E-02
105	GO:0010015: root morphogenesis	1.70E-02
106	GO:0015977: carbon fixation	1.70E-02
107	GO:0019344: cysteine biosynthetic process	1.78E-02
108	GO:0019761: glucosinolate biosynthetic process	1.92E-02
109	GO:0009684: indoleacetic acid biosynthetic process	2.00E-02
110	GO:0009832: plant-type cell wall biogenesis	2.00E-02
111	GO:0009697: salicylic acid biosynthetic process	2.30E-02
112	GO:0080167: response to karrikin	2.64E-02
113	GO:0009744: response to sucrose	3.05E-02
114	GO:0008033: tRNA processing	3.31E-02
115	GO:0051607: defense response to virus	3.31E-02
116	GO:0048316: seed development	3.31E-02
117	GO:0007030: Golgi organization	3.68E-02
118	GO:0015996: chlorophyll catabolic process	3.68E-02
119	GO:0010075: regulation of meristem growth	3.68E-02
120	GO:0009644: response to high light intensity	3.82E-02
121	GO:0022900: electron transport chain	4.02E-02
122	GO:0009750: response to fructose	4.06E-02
123	GO:0006833: water transport	4.06E-02
124	GO:0006972: hyperosmotic response	4.06E-02
125	GO:0042545: cell wall modification	4.06E-02
126	GO:0043085: positive regulation of catalytic activity	4.24E-02
127	GO:0009749: response to glucose	4.45E-02
128	GO:0006631: fatty acid metabolic process	4.45E-02
129	GO:0009409: response to cold	4.55E-02
130	GO:0009664: plant-type cell wall organization	4.86E-02
131	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0031409: pigment binding	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	0.00E+00
4	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
5	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
6	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
7	GO:0045550: geranylgeranyl reductase activity	0.00E+00
8	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
9	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
10	GO:0004802: transketolase activity	0.00E+00
11	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
12	GO:0003735: structural constituent of ribosome	4.52E-11
13	GO:0004812: aminoacyl-tRNA ligase activity	1.24E-04
14	GO:0019843: rRNA binding	1.82E-04
15	GO:0004828: serine-tRNA ligase activity	9.48E-04
16	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	9.48E-04
17	GO:0004831: tyrosine-tRNA ligase activity	9.48E-04
18	GO:0034256: chlorophyll(ide) b reductase activity	9.48E-04
19	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	9.48E-04
20	GO:0004827: proline-tRNA ligase activity	9.48E-04
21	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	9.48E-04
22	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	9.48E-04
23	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.72E-03
24	GO:0000049: tRNA binding	1.72E-03
25	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	2.15E-03
26	GO:0045430: chalcone isomerase activity	2.15E-03
27	GO:0004605: phosphatidate cytidylyltransferase activity	2.15E-03
28	GO:0004826: phenylalanine-tRNA ligase activity	2.15E-03
29	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.15E-03
30	GO:0045485: omega-6 fatty acid desaturase activity	2.15E-03
31	GO:0016872: intramolecular lyase activity	3.61E-03
32	GO:0032549: ribonucleoside binding	3.61E-03
33	GO:0016209: antioxidant activity	5.33E-03
34	GO:0071949: FAD binding	5.33E-03
35	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	5.33E-03
36	GO:0004332: fructose-bisphosphate aldolase activity	5.33E-03
37	GO:0004747: ribokinase activity	5.33E-03
38	GO:0004765: shikimate kinase activity	5.33E-03
39	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.33E-03
40	GO:0016984: ribulose-bisphosphate carboxylase activity	5.33E-03
41	GO:0016168: chlorophyll binding	6.22E-03
42	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	7.29E-03
43	GO:0030234: enzyme regulator activity	7.29E-03
44	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	7.56E-03
45	GO:0051537: 2 iron, 2 sulfur cluster binding	8.75E-03
46	GO:0004356: glutamate-ammonia ligase activity	9.45E-03
47	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.18E-02
48	GO:0003723: RNA binding	1.48E-02
49	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.52E-02
50	GO:0004427: inorganic diphosphatase activity	1.70E-02
51	GO:0042578: phosphoric ester hydrolase activity	1.70E-02
52	GO:0008236: serine-type peptidase activity	1.78E-02
53	GO:0009055: electron carrier activity	2.20E-02
54	GO:0043531: ADP binding	2.62E-02
55	GO:0004497: monooxygenase activity	3.65E-02
56	GO:0048038: quinone binding	3.68E-02
57	GO:0016760: cellulose synthase (UDP-forming) activity	3.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0009782: photosystem I antenna complex	0.00E+00
3	GO:0009507: chloroplast	6.23E-39
4	GO:0009570: chloroplast stroma	3.24E-33
5	GO:0009941: chloroplast envelope	7.18E-22
6	GO:0005840: ribosome	1.76E-14
7	GO:0009535: chloroplast thylakoid membrane	8.96E-13
8	GO:0009579: thylakoid	4.01E-10
9	GO:0009543: chloroplast thylakoid lumen	4.53E-07
10	GO:0030529: intracellular ribonucleoprotein complex	7.38E-06
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.43E-05
12	GO:0031977: thylakoid lumen	5.95E-05
13	GO:0005622: intracellular	6.64E-04
14	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	9.48E-04
15	GO:0042406: extrinsic component of endoplasmic reticulum membrane	9.48E-04
16	GO:0000311: plastid large ribosomal subunit	9.48E-04
17	GO:0009534: chloroplast thylakoid	1.27E-03
18	GO:0009295: nucleoid	2.53E-03
19	GO:0015934: large ribosomal subunit	3.40E-03
20	GO:0009536: plastid	8.94E-03
21	GO:0009523: photosystem II	1.52E-02
22	GO:0042651: thylakoid membrane	3.31E-02
23	GO:0010287: plastoglobule	3.62E-02