co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G121456

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090342: regulation of cell aging	0.00E+00
2	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
3	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
4	GO:0043043: peptide biosynthetic process	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:0090391: granum assembly	0.00E+00
8	GO:0043953: protein transport by the Tat complex	0.00E+00
9	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
10	GO:0046506: sulfolipid biosynthetic process	0.00E+00
11	GO:1901259: chloroplast rRNA processing	0.00E+00
12	GO:0006655: phosphatidylglycerol biosynthetic process	7.50E-12
13	GO:0045038: protein import into chloroplast thylakoid membrane	1.30E-09
14	GO:0010027: thylakoid membrane organization	2.43E-09
15	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.49E-07
16	GO:0010207: photosystem II assembly	2.80E-07
17	GO:0016226: iron-sulfur cluster assembly	8.70E-06
18	GO:0009658: chloroplast organization	1.44E-05
19	GO:0006364: rRNA processing	1.51E-05
20	GO:0009902: chloroplast relocation	4.82E-05
21	GO:0045036: protein targeting to chloroplast	7.66E-05
22	GO:0042793: transcription from plastid promoter	9.95E-05
23	GO:0009306: protein secretion	2.31E-04
24	GO:0010103: stomatal complex morphogenesis	2.77E-04
25	GO:0035304: regulation of protein dephosphorylation	3.26E-04
26	GO:0006184: obsolete GTP catabolic process	4.57E-04
27	GO:0006399: tRNA metabolic process	4.60E-04
28	GO:0009443: pyridoxal 5'-phosphate salvage	5.42E-04
29	GO:0032543: mitochondrial translation	5.42E-04
30	GO:0006423: cysteinyl-tRNA aminoacylation	5.42E-04
31	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	5.42E-04
32	GO:0009407: toxin catabolic process	7.67E-04
33	GO:0045893: positive regulation of transcription, DNA-templated	7.77E-04
34	GO:0009073: aromatic amino acid family biosynthetic process	9.12E-04
35	GO:0016556: mRNA modification	9.53E-04
36	GO:0019344: cysteine biosynthetic process	1.01E-03
37	GO:0019761: glucosinolate biosynthetic process	1.12E-03
38	GO:0042372: phylloquinone biosynthetic process	1.26E-03
39	GO:0009642: response to light intensity	1.26E-03
40	GO:1901671: positive regulation of superoxide dismutase activity	1.26E-03
41	GO:0006432: phenylalanyl-tRNA aminoacylation	1.26E-03
42	GO:0048481: plant ovule development	1.60E-03
43	GO:0000023: maltose metabolic process	1.60E-03
44	GO:0051607: defense response to virus	1.63E-03
45	GO:0006098: pentose-phosphate shunt	1.67E-03
46	GO:0006418: tRNA aminoacylation for protein translation	1.74E-03
47	GO:0006414: translational elongation	2.03E-03
48	GO:0007186: G-protein coupled receptor signaling pathway	2.10E-03
49	GO:0006733: oxidoreduction coenzyme metabolic process	2.10E-03
50	GO:0010731: protein glutathionylation	2.10E-03
51	GO:0016075: rRNA catabolic process	2.10E-03
52	GO:0043067: regulation of programmed cell death	2.10E-03
53	GO:0009247: glycolipid biosynthetic process	2.10E-03
54	GO:0010267: production of ta-siRNAs involved in RNA interference	2.77E-03
55	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.77E-03
56	GO:0071704: organic substance metabolic process	3.06E-03
57	GO:0006782: protoporphyrinogen IX biosynthetic process	3.06E-03
58	GO:0006165: nucleoside diphosphate phosphorylation	3.06E-03
59	GO:0006228: UTP biosynthetic process	3.06E-03
60	GO:0051205: protein insertion into membrane	3.06E-03
61	GO:0009117: nucleotide metabolic process	3.06E-03
62	GO:0045037: protein import into chloroplast stroma	3.06E-03
63	GO:0019375: galactolipid biosynthetic process	3.06E-03
64	GO:0006183: GTP biosynthetic process	3.06E-03
65	GO:0006241: CTP biosynthetic process	3.06E-03
66	GO:0006200: obsolete ATP catabolic process	3.08E-03
67	GO:0009773: photosynthetic electron transport in photosystem I	3.52E-03
68	GO:0070084: protein initiator methionine removal	4.19E-03
69	GO:0006569: tryptophan catabolic process	4.19E-03
70	GO:0019748: secondary metabolic process	4.19E-03
71	GO:0010468: regulation of gene expression	4.19E-03
72	GO:0048229: gametophyte development	5.40E-03
73	GO:0006749: glutathione metabolic process	5.40E-03
74	GO:0019252: starch biosynthetic process	6.57E-03
75	GO:0009108: coenzyme biosynthetic process	6.74E-03
76	GO:0010583: response to cyclopentenone	6.74E-03
77	GO:0034660: ncRNA metabolic process	6.74E-03
78	GO:0009106: lipoate metabolic process	6.74E-03
79	GO:0030003: cellular cation homeostasis	6.74E-03
80	GO:0006766: vitamin metabolic process	6.74E-03
81	GO:0009987: cellular process	6.74E-03
82	GO:0009411: response to UV	6.74E-03
83	GO:0015693: magnesium ion transport	8.18E-03
84	GO:0043039: tRNA aminoacylation	8.18E-03
85	GO:0030245: cellulose catabolic process	8.18E-03
86	GO:0051604: protein maturation	8.18E-03
87	GO:0009793: embryo development ending in seed dormancy	9.36E-03
88	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	9.72E-03
89	GO:0045087: innate immune response	9.72E-03
90	GO:0009585: red, far-red light phototransduction	9.72E-03
91	GO:0009684: indoleacetic acid biosynthetic process	1.14E-02
92	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.49E-02
93	GO:0006546: glycine catabolic process	1.49E-02
94	GO:0006779: porphyrin-containing compound biosynthetic process	1.49E-02
95	GO:0006457: protein folding	1.60E-02
96	GO:0010228: vegetative to reproductive phase transition of meristem	1.72E-02
97	GO:0007018: microtubule-based movement	1.81E-02
98	GO:0008033: tRNA processing	1.88E-02
99	GO:0043085: positive regulation of catalytic activity	1.91E-02
100	GO:0010197: polar nucleus fusion	2.08E-02
101	GO:0008299: isoprenoid biosynthetic process	2.08E-02
102	GO:0006636: unsaturated fatty acid biosynthetic process	2.08E-02
103	GO:0042545: cell wall modification	2.30E-02
104	GO:0019684: photosynthesis, light reaction	2.52E-02
105	GO:0030154: cell differentiation	2.52E-02
106	GO:0009657: plastid organization	2.52E-02
107	GO:0016036: cellular response to phosphate starvation	2.75E-02
108	GO:0006417: regulation of translation	2.75E-02
109	GO:0006352: DNA-templated transcription, initiation	2.99E-02
110	GO:0010182: sugar mediated signaling pathway	3.23E-02
111	GO:0009695: jasmonic acid biosynthetic process	3.48E-02
112	GO:0006869: lipid transport	3.48E-02
113	GO:0032259: methylation	4.53E-02
114	GO:0006626: protein targeting to mitochondrion	4.55E-02
115	GO:0015979: photosynthesis	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
2	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
5	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
6	GO:0004831: tyrosine-tRNA ligase activity	5.42E-04
7	GO:0004362: glutathione-disulfide reductase activity	5.42E-04
8	GO:0070402: NADPH binding	5.42E-04
9	GO:0008146: sulfotransferase activity	5.42E-04
10	GO:0004817: cysteine-tRNA ligase activity	5.42E-04
11	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	5.42E-04
12	GO:0045174: glutathione dehydrogenase (ascorbate) activity	5.42E-04
13	GO:0004826: phenylalanine-tRNA ligase activity	1.26E-03
14	GO:0004853: uroporphyrinogen decarboxylase activity	1.26E-03
15	GO:0003746: translation elongation factor activity	1.35E-03
16	GO:0004812: aminoacyl-tRNA ligase activity	2.03E-03
17	GO:0000774: adenyl-nucleotide exchange factor activity	2.10E-03
18	GO:0000166: nucleotide binding	2.60E-03
19	GO:0004550: nucleoside diphosphate kinase activity	3.06E-03
20	GO:0003913: DNA photolyase activity	3.06E-03
21	GO:0070569: uridylyltransferase activity	3.06E-03
22	GO:0004765: shikimate kinase activity	3.06E-03
23	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	3.06E-03
24	GO:0003924: GTPase activity	3.84E-03
25	GO:0008565: protein transporter activity	3.92E-03
26	GO:0000287: magnesium ion binding	3.97E-03
27	GO:0070006: metalloaminopeptidase activity	4.19E-03
28	GO:0016868: intramolecular transferase activity, phosphotransferases	4.19E-03
29	GO:0016987: sigma factor activity	4.19E-03
30	GO:0005525: GTP binding	4.36E-03
31	GO:0008235: metalloexopeptidase activity	5.40E-03
32	GO:0016887: ATPase activity	5.93E-03
33	GO:0008810: cellulase activity	6.74E-03
34	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	6.74E-03
35	GO:0004525: ribonuclease III activity	6.74E-03
36	GO:0051087: chaperone binding	8.18E-03
37	GO:0008312: 7S RNA binding	8.18E-03
38	GO:0043022: ribosome binding	8.18E-03
39	GO:0008266: poly(U) RNA binding	9.72E-03
40	GO:0051082: unfolded protein binding	1.09E-02
41	GO:0004177: aminopeptidase activity	1.14E-02
42	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.14E-02
43	GO:0015095: magnesium ion transmembrane transporter activity	1.14E-02
44	GO:0046873: metal ion transmembrane transporter activity	1.14E-02
45	GO:0000049: tRNA binding	1.14E-02
46	GO:0046914: transition metal ion binding	1.31E-02
47	GO:0003777: microtubule motor activity	1.81E-02
48	GO:0005216: ion channel activity	2.30E-02
49	GO:0016831: carboxy-lyase activity	2.30E-02
50	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.52E-02
51	GO:0008017: microtubule binding	3.02E-02
52	GO:0031072: heat shock protein binding	3.48E-02
53	GO:0004222: metalloendopeptidase activity	4.01E-02
54	GO:0005524: ATP binding	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	9.69E-20
4	GO:0009570: chloroplast stroma	1.58E-11
5	GO:0009535: chloroplast thylakoid membrane	2.44E-07
6	GO:0009941: chloroplast envelope	2.07E-06
7	GO:0009532: plastid stroma	4.60E-04
8	GO:0009527: plastid outer membrane	5.42E-04
9	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	5.42E-04
10	GO:0009526: plastid envelope	5.42E-04
11	GO:0044445: cytosolic part	5.42E-04
12	GO:0080085: signal recognition particle, chloroplast targeting	5.42E-04
13	GO:0009528: plastid inner membrane	5.42E-04
14	GO:0009295: nucleoid	1.16E-03
15	GO:0009579: thylakoid	1.19E-03
16	GO:0009840: chloroplastic endopeptidase Clp complex	4.19E-03
17	GO:0009706: chloroplast inner membrane	4.80E-03
18	GO:0019898: extrinsic component of membrane	5.40E-03
19	GO:0031225: anchored component of membrane	5.40E-03
20	GO:0005759: mitochondrial matrix	5.76E-03
21	GO:0009654: photosystem II oxygen evolving complex	6.74E-03
22	GO:0048500: signal recognition particle	6.74E-03
23	GO:0009523: photosystem II	6.83E-03
24	GO:0005875: microtubule associated complex	8.62E-03
25	GO:0010319: stromule	9.27E-03
26	GO:0009534: chloroplast thylakoid	1.63E-02
27	GO:0005871: kinesin complex	1.72E-02
28	GO:0009536: plastid	2.36E-02
29	GO:0019013: viral nucleocapsid	3.23E-02
30	GO:0005874: microtubule	4.56E-02
31	GO:0048046: apoplast	4.58E-02