co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G121262

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006233: dTDP biosynthetic process	0.00E+00
2	GO:0045694: regulation of embryo sac egg cell differentiation	0.00E+00
3	GO:0043987: histone H3-S10 phosphorylation	0.00E+00
4	GO:0032465: regulation of cytokinesis	0.00E+00
5	GO:0007049: cell cycle	4.90E-09
6	GO:0016572: histone phosphorylation	3.81E-07
7	GO:0006260: DNA replication	1.74E-06
8	GO:0010389: regulation of G2/M transition of mitotic cell cycle	2.73E-06
9	GO:0051301: cell division	4.15E-05
10	GO:0006275: regulation of DNA replication	6.28E-05
11	GO:0019915: lipid storage	7.11E-05
12	GO:0010162: seed dormancy process	1.55E-04
13	GO:0050826: response to freezing	1.92E-04
14	GO:0009909: regulation of flower development	2.03E-04
15	GO:0009966: regulation of signal transduction	2.83E-04
16	GO:0010182: sugar mediated signaling pathway	3.94E-04
17	GO:0010074: maintenance of meristem identity	5.29E-04
18	GO:0007059: chromosome segregation	5.97E-04
19	GO:0051028: mRNA transport	5.97E-04
20	GO:0042276: error-prone translesion synthesis	5.97E-04
21	GO:1990426: mitotic recombination-dependent replication fork processing	5.97E-04
22	GO:0045292: mRNA cis splicing, via spliceosome	5.97E-04
23	GO:0006378: mRNA polyadenylation	5.97E-04
24	GO:0048574: long-day photoperiodism, flowering	5.97E-04
25	GO:0007112: male meiosis cytokinesis	5.97E-04
26	GO:0000917: barrier septum assembly	5.97E-04
27	GO:0009845: seed germination	6.06E-04
28	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	6.88E-04
29	GO:0006342: chromatin silencing	6.93E-04
30	GO:0009933: meristem structural organization	7.78E-04
31	GO:0000226: microtubule cytoskeleton organization	8.76E-04
32	GO:0006259: DNA metabolic process	1.10E-03
33	GO:0009086: methionine biosynthetic process	1.21E-03
34	GO:0051726: regulation of cell cycle	1.33E-03
35	GO:0042547: cell wall modification involved in multidimensional cell growth	1.38E-03
36	GO:0009956: radial pattern formation	1.38E-03
37	GO:0009186: deoxyribonucleoside diphosphate metabolic process	1.38E-03
38	GO:0009755: hormone-mediated signaling pathway	1.38E-03
39	GO:0018279: protein N-linked glycosylation via asparagine	1.38E-03
40	GO:0016571: histone methylation	1.59E-03
41	GO:0010332: response to gamma radiation	1.59E-03
42	GO:0006406: mRNA export from nucleus	1.86E-03
43	GO:0009640: photomorphogenesis	2.06E-03
44	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.15E-03
45	GO:0006471: protein ADP-ribosylation	2.29E-03
46	GO:0009957: epidermal cell fate specification	2.29E-03
47	GO:0007094: mitotic spindle assembly checkpoint	2.29E-03
48	GO:0045727: positive regulation of translation	2.29E-03
49	GO:0022904: respiratory electron transport chain	2.29E-03
50	GO:0001558: regulation of cell growth	2.29E-03
51	GO:0000398: mRNA splicing, via spliceosome	2.59E-03
52	GO:0042176: regulation of protein catabolic process	3.37E-03
53	GO:0008654: phospholipid biosynthetic process	3.37E-03
54	GO:0008356: asymmetric cell division	3.37E-03
55	GO:0032147: activation of protein kinase activity	3.37E-03
56	GO:0031053: primary miRNA processing	3.37E-03
57	GO:0006281: DNA repair	3.41E-03
58	GO:0007018: microtubule-based movement	3.45E-03
59	GO:0006265: DNA topological change	4.61E-03
60	GO:0060236: regulation of mitotic spindle organization	4.61E-03
61	GO:0032875: regulation of DNA endoreduplication	4.61E-03
62	GO:0010087: phloem or xylem histogenesis	5.94E-03
63	GO:0006396: RNA processing	6.00E-03
64	GO:0006366: transcription from RNA polymerase II promoter	7.41E-03
65	GO:0055072: iron ion homeostasis	7.41E-03
66	GO:0009934: regulation of meristem structural organization	7.41E-03
67	GO:0016579: protein deubiquitination	8.49E-03
68	GO:0030245: cellulose catabolic process	9.00E-03
69	GO:0048449: floral organ formation	9.00E-03
70	GO:0000741: karyogamy	9.00E-03
71	GO:0010311: lateral root formation	9.00E-03
72	GO:0048366: leaf development	9.18E-03
73	GO:0006302: double-strand break repair	1.07E-02
74	GO:0000911: cytokinesis by cell plate formation	1.22E-02
75	GO:0009955: adaxial/abaxial pattern specification	1.25E-02
76	GO:0009451: RNA modification	1.25E-02
77	GO:0051567: histone H3-K9 methylation	1.30E-02
78	GO:0016570: histone modification	1.44E-02
79	GO:0048453: sepal formation	1.44E-02
80	GO:0010048: vernalization response	1.44E-02
81	GO:0006312: mitotic recombination	1.44E-02
82	GO:0006479: protein methylation	1.44E-02
83	GO:0012501: programmed cell death	1.44E-02
84	GO:0016070: RNA metabolic process	1.44E-02
85	GO:0006306: DNA methylation	1.48E-02
86	GO:0016567: protein ubiquitination	1.59E-02
87	GO:0048451: petal formation	1.64E-02
88	GO:0001522: pseudouridine synthesis	1.85E-02
89	GO:0010228: vegetative to reproductive phase transition of meristem	1.97E-02
90	GO:0048316: seed development	2.07E-02
91	GO:0006487: protein N-linked glycosylation	2.07E-02
92	GO:0006289: nucleotide-excision repair	2.07E-02
93	GO:0009607: response to biotic stimulus	2.07E-02
94	GO:0006446: regulation of translational initiation	2.29E-02
95	GO:0001731: formation of translation preinitiation complex	2.53E-02
96	GO:0007062: sister chromatid cohesion	2.53E-02
97	GO:0000724: double-strand break repair via homologous recombination	2.78E-02
98	GO:0006914: autophagy	2.78E-02
99	GO:0006952: defense response	2.92E-02
100	GO:0006310: DNA recombination	3.03E-02
101	GO:0008219: cell death	3.03E-02
102	GO:0044267: cellular protein metabolic process	3.03E-02
103	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.03E-02
104	GO:0045893: positive regulation of transcription, DNA-templated	3.05E-02
105	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.29E-02
106	GO:0000278: mitotic cell cycle	3.84E-02
107	GO:0009553: embryo sac development	3.84E-02
108	GO:0009793: embryo development ending in seed dormancy	4.27E-02
109	GO:0031047: gene silencing by RNA	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	0.00E+00
2	GO:0035175: histone kinase activity (H3-S10 specific)	0.00E+00
3	GO:0004798: thymidylate kinase activity	0.00E+00
4	GO:0008420: CTD phosphatase activity	0.00E+00
5	GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	4.29E-05
6	GO:0030337: DNA polymerase processivity factor activity	5.97E-04
7	GO:0004708: MAP kinase kinase activity	5.97E-04
8	GO:0019905: syntaxin binding	5.97E-04
9	GO:0000339: RNA cap binding	5.97E-04
10	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	5.97E-04
11	GO:0000150: recombinase activity	5.97E-04
12	GO:0003916: DNA topoisomerase activity	5.97E-04
13	GO:0003684: damaged DNA binding	1.10E-03
14	GO:0008017: microtubule binding	1.20E-03
15	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	2.29E-03
16	GO:0070628: proteasome binding	2.29E-03
17	GO:0019901: protein kinase binding	2.46E-03
18	GO:0003723: RNA binding	3.01E-03
19	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	3.37E-03
20	GO:0003777: microtubule motor activity	3.45E-03
21	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	4.61E-03
22	GO:0030234: enzyme regulator activity	4.61E-03
23	GO:0003713: transcription coactivator activity	5.94E-03
24	GO:0003729: mRNA binding	5.94E-03
25	GO:0008810: cellulase activity	7.41E-03
26	GO:0003950: NAD+ ADP-ribosyltransferase activity	7.41E-03
27	GO:0008094: DNA-dependent ATPase activity	9.00E-03
28	GO:0043130: ubiquitin binding	9.00E-03
29	GO:0043022: ribosome binding	9.00E-03
30	GO:0003676: nucleic acid binding	1.23E-02
31	GO:0009982: pseudouridine synthase activity	1.25E-02
32	GO:0046914: transition metal ion binding	1.44E-02
33	GO:0003697: single-stranded DNA binding	1.64E-02
34	GO:0003690: double-stranded DNA binding	1.64E-02
35	GO:0005524: ATP binding	2.24E-02
36	GO:0016651: oxidoreductase activity, acting on NAD(P)H	2.53E-02

Rank	GO Term	Adjusted P value
1	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	0.00E+00
2	GO:0005819: spindle	2.85E-05
3	GO:0000775: chromosome, centromeric region	4.29E-05
4	GO:0005971: ribonucleoside-diphosphate reductase complex	4.29E-05
5	GO:0005849: mRNA cleavage factor complex	5.97E-04
6	GO:0005846: nuclear cap binding complex	5.97E-04
7	GO:0043626: PCNA complex	5.97E-04
8	GO:0005681: spliceosomal complex	1.33E-03
9	GO:0008250: oligosaccharyltransferase complex	1.38E-03
10	GO:0005874: microtubule	2.28E-03
11	GO:0000808: origin recognition complex	2.29E-03
12	GO:0031966: mitochondrial membrane	3.19E-03
13	GO:0005871: kinesin complex	3.21E-03
14	GO:0000776: kinetochore	3.37E-03
15	GO:0005634: nucleus	4.26E-03
16	GO:0005732: small nucleolar ribonucleoprotein complex	4.61E-03
17	GO:0005730: nucleolus	5.45E-03
18	GO:0009524: phragmoplast	8.49E-03
19	GO:0016272: prefoldin complex	9.00E-03
20	GO:0005744: mitochondrial inner membrane presequence translocase complex	9.00E-03
21	GO:0016604: nuclear body	9.00E-03
22	GO:0005875: microtubule associated complex	9.89E-03
23	GO:0045271: respiratory chain complex I	1.66E-02
24	GO:0005694: chromosome	1.99E-02
25	GO:0005743: mitochondrial inner membrane	2.19E-02
26	GO:0016282: eukaryotic 43S preinitiation complex	2.53E-02
27	GO:0033290: eukaryotic 48S preinitiation complex	2.53E-02
28	GO:0005852: eukaryotic translation initiation factor 3 complex	2.78E-02
29	GO:0005654: nucleoplasm	3.03E-02
30	GO:0019013: viral nucleocapsid	3.56E-02
31	GO:0005635: nuclear envelope	4.41E-02