co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G119906

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
2	GO:0042780: tRNA 3'-end processing	0.00E+00
3	GO:1900865: chloroplast RNA modification	0.00E+00
4	GO:0010157: response to chlorate	0.00E+00
5	GO:0043686: co-translational protein modification	0.00E+00
6	GO:0006591: ornithine metabolic process	0.00E+00
7	GO:0090391: granum assembly	0.00E+00
8	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
9	GO:0043953: protein transport by the Tat complex	0.00E+00
10	GO:0046506: sulfolipid biosynthetic process	0.00E+00
11	GO:0010117: photoprotection	0.00E+00
12	GO:0009658: chloroplast organization	2.69E-10
13	GO:0006457: protein folding	6.37E-10
14	GO:1901671: positive regulation of superoxide dismutase activity	2.06E-05
15	GO:0006399: tRNA metabolic process	3.06E-05
16	GO:0006364: rRNA processing	8.21E-05
17	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.28E-04
18	GO:0045038: protein import into chloroplast thylakoid membrane	1.54E-04
19	GO:0006782: protoporphyrinogen IX biosynthetic process	1.54E-04
20	GO:0045037: protein import into chloroplast stroma	1.54E-04
21	GO:0006353: DNA-templated transcription, termination	1.54E-04
22	GO:0045036: protein targeting to chloroplast	1.78E-04
23	GO:0009306: protein secretion	4.22E-04
24	GO:0010206: photosystem II repair	6.03E-04
25	GO:0019538: protein metabolic process	6.03E-04
26	GO:0006788: heme oxidation	8.02E-04
27	GO:0018160: peptidyl-pyrromethane cofactor linkage	8.02E-04
28	GO:0032543: mitochondrial translation	8.02E-04
29	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	8.02E-04
30	GO:0016556: mRNA modification	1.67E-03
31	GO:0010024: phytochromobilin biosynthetic process	1.84E-03
32	GO:0009102: biotin biosynthetic process	1.84E-03
33	GO:0010380: regulation of chlorophyll biosynthetic process	1.84E-03
34	GO:0030308: negative regulation of cell growth	1.84E-03
35	GO:0019481: L-alanine catabolic process, by transamination	1.84E-03
36	GO:0006779: porphyrin-containing compound biosynthetic process	2.01E-03
37	GO:0010027: thylakoid membrane organization	2.58E-03
38	GO:0006655: phosphatidylglycerol biosynthetic process	2.78E-03
39	GO:0042793: transcription from plastid promoter	2.78E-03
40	GO:0019760: glucosinolate metabolic process	3.04E-03
41	GO:0000304: response to singlet oxygen	3.04E-03
42	GO:0006450: regulation of translational fidelity	3.04E-03
43	GO:0051085: chaperone mediated protein folding requiring cofactor	3.04E-03
44	GO:0016075: rRNA catabolic process	3.04E-03
45	GO:0009247: glycolipid biosynthetic process	3.04E-03
46	GO:0015867: ATP transport	3.04E-03
47	GO:0008299: isoprenoid biosynthetic process	3.25E-03
48	GO:0000373: Group II intron splicing	4.53E-03
49	GO:0042026: protein refolding	4.53E-03
50	GO:0006165: nucleoside diphosphate phosphorylation	4.53E-03
51	GO:0006228: UTP biosynthetic process	4.53E-03
52	GO:0019375: galactolipid biosynthetic process	4.53E-03
53	GO:0006183: GTP biosynthetic process	4.53E-03
54	GO:0006241: CTP biosynthetic process	4.53E-03
55	GO:0044267: cellular protein metabolic process	4.88E-03
56	GO:0009627: systemic acquired resistance	5.49E-03
57	GO:0009308: amine metabolic process	6.15E-03
58	GO:0010468: regulation of gene expression	6.15E-03
59	GO:0031347: regulation of defense response	7.97E-03
60	GO:0006749: glutathione metabolic process	7.97E-03
61	GO:0045893: positive regulation of transcription, DNA-templated	9.74E-03
62	GO:0033014: tetrapyrrole biosynthetic process	9.96E-03
63	GO:0006189: 'de novo' IMP biosynthetic process	9.96E-03
64	GO:0034660: ncRNA metabolic process	9.96E-03
65	GO:0032880: regulation of protein localization	9.96E-03
66	GO:0009704: de-etiolation	9.96E-03
67	GO:0009411: response to UV	9.96E-03
68	GO:0009902: chloroplast relocation	1.01E-02
69	GO:0006520: cellular amino acid metabolic process	1.01E-02
70	GO:0051604: protein maturation	1.21E-02
71	GO:0019252: starch biosynthetic process	1.34E-02
72	GO:0009637: response to blue light	1.40E-02
73	GO:0045087: innate immune response	1.44E-02
74	GO:0001666: response to hypoxia	1.44E-02
75	GO:0009585: red, far-red light phototransduction	1.44E-02
76	GO:0006950: response to stress	1.55E-02
77	GO:0010114: response to red light	1.62E-02
78	GO:0009407: toxin catabolic process	1.68E-02
79	GO:0000302: response to reactive oxygen species	1.68E-02
80	GO:0010218: response to far red light	1.86E-02
81	GO:0000023: maltose metabolic process	1.99E-02
82	GO:0006508: proteolysis	2.37E-02
83	GO:0006184: obsolete GTP catabolic process	2.50E-02
84	GO:0031408: oxylipin biosynthetic process	2.79E-02
85	GO:0051607: defense response to virus	2.79E-02
86	GO:0048316: seed development	2.79E-02
87	GO:0015995: chlorophyll biosynthetic process	2.84E-02
88	GO:0045454: cell redox homeostasis	2.91E-02
89	GO:0009409: response to cold	3.05E-02
90	GO:0019684: photosynthesis, light reaction	3.74E-02
91	GO:0009657: plastid organization	3.74E-02
92	GO:0010207: photosystem II assembly	4.05E-02
93	GO:0010267: production of ta-siRNAs involved in RNA interference	4.09E-02
94	GO:0016036: cellular response to phosphate starvation	4.09E-02
95	GO:0035196: production of miRNAs involved in gene silencing by miRNA	4.09E-02
96	GO:0008219: cell death	4.09E-02
97	GO:0010155: regulation of proton transport	4.09E-02
98	GO:0010103: stomatal complex morphogenesis	4.44E-02
99	GO:0009408: response to heat	4.53E-02
100	GO:0035304: regulation of protein dephosphorylation	4.80E-02
101	GO:0046777: protein autophosphorylation	4.80E-02
102	GO:0044237: cellular metabolic process	4.83E-02
103	GO:0006396: RNA processing	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
2	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
3	GO:0004076: biotin synthase activity	0.00E+00
4	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
5	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
6	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
7	GO:0042586: peptide deformylase activity	0.00E+00
8	GO:0004853: uroporphyrinogen decarboxylase activity	2.06E-05
9	GO:0004252: serine-type endopeptidase activity	6.45E-05
10	GO:0000774: adenyl-nucleotide exchange factor activity	7.11E-05
11	GO:0016743: carboxyl- or carbamoyltransferase activity	7.11E-05
12	GO:0051082: unfolded protein binding	1.95E-04
13	GO:0004525: ribonuclease III activity	6.03E-04
14	GO:0004362: glutathione-disulfide reductase activity	8.02E-04
15	GO:0008146: sulfotransferase activity	8.02E-04
16	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	8.02E-04
17	GO:0004418: hydroxymethylbilane synthase activity	8.02E-04
18	GO:0051087: chaperone binding	8.20E-04
19	GO:0046914: transition metal ion binding	1.67E-03
20	GO:0005496: steroid binding	1.84E-03
21	GO:0016630: protochlorophyllide reductase activity	1.84E-03
22	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.84E-03
23	GO:0047134: protein-disulfide reductase activity	1.84E-03
24	GO:0005347: ATP transmembrane transporter activity	1.84E-03
25	GO:0004392: heme oxygenase (decyclizing) activity	1.84E-03
26	GO:0005507: copper ion binding	2.02E-03
27	GO:0003959: NADPH dehydrogenase activity	3.04E-03
28	GO:0016831: carboxy-lyase activity	3.76E-03
29	GO:0004550: nucleoside diphosphate kinase activity	4.53E-03
30	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	4.53E-03
31	GO:0042803: protein homodimerization activity	6.34E-03
32	GO:0008565: protein transporter activity	6.87E-03
33	GO:0016817: hydrolase activity, acting on acid anhydrides	7.97E-03
34	GO:0016597: amino acid binding	9.22E-03
35	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	9.96E-03
36	GO:0008233: peptidase activity	1.37E-02
37	GO:0008236: serine-type peptidase activity	1.40E-02
38	GO:0008266: poly(U) RNA binding	1.44E-02
39	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.68E-02
40	GO:0003690: double-stranded DNA binding	2.21E-02
41	GO:0048038: quinone binding	3.10E-02
42	GO:0005525: GTP binding	3.74E-02
43	GO:0015035: protein disulfide oxidoreductase activity	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0009526: plastid envelope	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	1.26E-20
4	GO:0009941: chloroplast envelope	4.74E-17
5	GO:0009570: chloroplast stroma	8.41E-15
6	GO:0009535: chloroplast thylakoid membrane	1.23E-09
7	GO:0009532: plastid stroma	4.69E-09
8	GO:0009579: thylakoid	9.82E-08
9	GO:0009840: chloroplastic endopeptidase Clp complex	2.72E-04
10	GO:0019867: outer membrane	8.02E-04
11	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	8.02E-04
12	GO:0080085: signal recognition particle, chloroplast targeting	8.02E-04
13	GO:0005759: mitochondrial matrix	1.36E-03
14	GO:0009536: plastid	1.64E-03
15	GO:0009533: chloroplast stromal thylakoid	1.84E-03
16	GO:0009534: chloroplast thylakoid	5.16E-03
17	GO:0009707: chloroplast outer membrane	6.15E-03
18	GO:0019898: extrinsic component of membrane	7.97E-03
19	GO:0009706: chloroplast inner membrane	8.39E-03
20	GO:0009654: photosystem II oxygen evolving complex	9.96E-03
21	GO:0005739: mitochondrion	1.24E-02
22	GO:0010319: stromule	1.62E-02
23	GO:0031977: thylakoid lumen	1.74E-02
24	GO:0009295: nucleoid	2.21E-02
25	GO:0042651: thylakoid membrane	2.79E-02
26	GO:0009543: chloroplast thylakoid lumen	2.79E-02
27	GO:0048046: apoplast	3.82E-02