co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G117968

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051188: cofactor biosynthetic process	0.00E+00
2	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
3	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
4	GO:0042550: photosystem I stabilization	0.00E+00
5	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
6	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
7	GO:0010028: xanthophyll cycle	0.00E+00
8	GO:0019676: ammonia assimilation cycle	0.00E+00
9	GO:0035436: triose phosphate transmembrane transport	0.00E+00
10	GO:0015714: phosphoenolpyruvate transport	0.00E+00
11	GO:0030243: cellulose metabolic process	0.00E+00
12	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
13	GO:0015979: photosynthesis	7.00E-21
14	GO:0010207: photosystem II assembly	7.65E-16
15	GO:0010027: thylakoid membrane organization	1.02E-14
16	GO:0015995: chlorophyll biosynthetic process	7.99E-14
17	GO:0009773: photosynthetic electron transport in photosystem I	9.01E-13
18	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.64E-12
19	GO:0016117: carotenoid biosynthetic process	1.64E-12
20	GO:0006098: pentose-phosphate shunt	1.64E-12
21	GO:0006364: rRNA processing	3.66E-12
22	GO:0009902: chloroplast relocation	5.29E-10
23	GO:0043085: positive regulation of catalytic activity	4.35E-09
24	GO:0006636: unsaturated fatty acid biosynthetic process	1.16E-08
25	GO:0009637: response to blue light	6.50E-08
26	GO:0010114: response to red light	1.13E-07
27	GO:0010218: response to far red light	1.87E-07
28	GO:0009106: lipoate metabolic process	3.11E-07
29	GO:0006766: vitamin metabolic process	3.11E-07
30	GO:0009108: coenzyme biosynthetic process	3.11E-07
31	GO:0000023: maltose metabolic process	4.57E-06
32	GO:0070838: divalent metal ion transport	5.53E-06
33	GO:0009772: photosynthetic electron transport in photosystem II	5.53E-06
34	GO:0019748: secondary metabolic process	5.53E-06
35	GO:0006546: glycine catabolic process	6.01E-06
36	GO:0009765: photosynthesis, light harvesting	6.01E-06
37	GO:0019252: starch biosynthetic process	1.10E-05
38	GO:0042793: transcription from plastid promoter	1.30E-05
39	GO:0009767: photosynthetic electron transport chain	1.30E-05
40	GO:0030003: cellular cation homeostasis	2.28E-05
41	GO:0019344: cysteine biosynthetic process	2.77E-05
42	GO:0010155: regulation of proton transport	4.31E-05
43	GO:0018298: protein-chromophore linkage	4.31E-05
44	GO:0009072: aromatic amino acid family metabolic process	6.03E-05
45	GO:0006733: oxidoreduction coenzyme metabolic process	8.40E-05
46	GO:0009695: jasmonic acid biosynthetic process	8.57E-05
47	GO:0006814: sodium ion transport	1.24E-04
48	GO:0009697: salicylic acid biosynthetic process	1.24E-04
49	GO:0019216: regulation of lipid metabolic process	1.81E-04
50	GO:0009595: detection of biotic stimulus	1.81E-04
51	GO:0009117: nucleotide metabolic process	1.81E-04
52	GO:0045037: protein import into chloroplast stroma	1.81E-04
53	GO:0080167: response to karrikin	2.14E-04
54	GO:0000096: sulfur amino acid metabolic process	3.17E-04
55	GO:0006569: tryptophan catabolic process	3.17E-04
56	GO:0043900: regulation of multi-organism process	3.17E-04
57	GO:0019761: glucosinolate biosynthetic process	3.72E-04
58	GO:0019684: photosynthesis, light reaction	5.16E-04
59	GO:0010206: photosystem II repair	6.97E-04
60	GO:0034660: ncRNA metabolic process	6.97E-04
61	GO:0010103: stomatal complex morphogenesis	7.24E-04
62	GO:0046777: protein autophosphorylation	8.45E-04
63	GO:0035304: regulation of protein dephosphorylation	8.45E-04
64	GO:0009768: photosynthesis, light harvesting in photosystem I	8.84E-04
65	GO:0010310: regulation of hydrogen peroxide metabolic process	9.48E-04
66	GO:0015986: ATP synthesis coupled proton transport	9.81E-04
67	GO:0015977: carbon fixation	1.24E-03
68	GO:0022900: electron transport chain	1.28E-03
69	GO:0009409: response to cold	1.44E-03
70	GO:0009684: indoleacetic acid biosynthetic process	1.56E-03
71	GO:0042742: defense response to bacterium	1.60E-03
72	GO:0044272: sulfur compound biosynthetic process	2.01E-03
73	GO:0006875: cellular metal ion homeostasis	2.01E-03
74	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.30E-03
75	GO:0009416: response to light stimulus	3.22E-03
76	GO:0031408: oxylipin biosynthetic process	3.22E-03
77	GO:0006655: phosphatidylglycerol biosynthetic process	3.22E-03
78	GO:0007186: G-protein coupled receptor signaling pathway	3.37E-03
79	GO:0016024: CDP-diacylglycerol biosynthetic process	3.37E-03
80	GO:0022904: respiratory electron transport chain	3.37E-03
81	GO:0051289: protein homotetramerization	3.37E-03
82	GO:0019760: glucosinolate metabolic process	3.37E-03
83	GO:0009658: chloroplast organization	4.24E-03
84	GO:0006833: water transport	4.34E-03
85	GO:0009750: response to fructose	4.34E-03
86	GO:0030154: cell differentiation	4.96E-03
87	GO:0009749: response to glucose	4.96E-03
88	GO:0009657: plastid organization	4.96E-03
89	GO:0009744: response to sucrose	4.97E-03
90	GO:0010196: nonphotochemical quenching	4.98E-03
91	GO:0050821: protein stabilization	4.98E-03
92	GO:0016485: protein processing	4.98E-03
93	GO:0051260: protein homooligomerization	4.98E-03
94	GO:0006353: DNA-templated transcription, termination	4.98E-03
95	GO:0006014: D-ribose metabolic process	4.98E-03
96	GO:0045038: protein import into chloroplast thylakoid membrane	4.98E-03
97	GO:0009966: regulation of signal transduction	5.62E-03
98	GO:0009624: response to nematode	6.19E-03
99	GO:0006612: protein targeting to membrane	6.33E-03
100	GO:0010200: response to chitin	6.33E-03
101	GO:0009644: response to high light intensity	6.65E-03
102	GO:0006796: phosphate-containing compound metabolic process	6.79E-03
103	GO:0060416: response to growth hormone	6.79E-03
104	GO:0009813: flavonoid biosynthetic process	6.79E-03
105	GO:0034755: iron ion transmembrane transport	6.79E-03
106	GO:0007568: aging	6.79E-03
107	GO:0015994: chlorophyll metabolic process	6.79E-03
108	GO:0070084: protein initiator methionine removal	6.79E-03
109	GO:0010363: regulation of plant-type hypersensitive response	7.10E-03
110	GO:0031348: negative regulation of defense response	7.91E-03
111	GO:0009867: jasmonic acid mediated signaling pathway	7.91E-03
112	GO:0006542: glutamine biosynthetic process	8.81E-03
113	GO:0006568: tryptophan metabolic process	8.81E-03
114	GO:0006096: glycolytic process	9.32E-03
115	GO:0009704: de-etiolation	1.10E-02
116	GO:0009987: cellular process	1.10E-02
117	GO:0009411: response to UV	1.10E-02
118	GO:0009814: defense response, incompatible interaction	1.10E-02
119	GO:0000165: MAPK cascade	1.16E-02
120	GO:0045893: positive regulation of transcription, DNA-templated	1.17E-02
121	GO:0005985: sucrose metabolic process	1.33E-02
122	GO:0009735: response to cytokinin	1.38E-02
123	GO:0009073: aromatic amino acid family biosynthetic process	1.49E-02
124	GO:0000162: tryptophan biosynthetic process	1.59E-02
125	GO:0009832: plant-type cell wall biogenesis	1.86E-02
126	GO:0016226: iron-sulfur cluster assembly	2.01E-02
127	GO:0006354: DNA-templated transcription, elongation	2.14E-02
128	GO:0016556: mRNA modification	2.14E-02
129	GO:0006006: glucose metabolic process	2.14E-02
130	GO:0048527: lateral root development	2.14E-02
131	GO:0006754: ATP biosynthetic process	2.14E-02
132	GO:0046854: phosphatidylinositol phosphorylation	2.76E-02
133	GO:0045036: protein targeting to chloroplast	2.76E-02
134	GO:0006108: malate metabolic process	3.08E-02
135	GO:0008652: cellular amino acid biosynthetic process	3.27E-02
136	GO:0007030: Golgi organization	3.42E-02
137	GO:0016049: cell growth	3.78E-02
138	GO:0006972: hyperosmotic response	3.78E-02
139	GO:0009965: leaf morphogenesis	4.03E-02
140	GO:0015992: proton transport	4.14E-02
141	GO:0016126: sterol biosynthetic process	4.14E-02
142	GO:0006631: fatty acid metabolic process	4.14E-02
143	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	4.52E-02
144	GO:0006417: regulation of translation	4.52E-02
145	GO:0010193: response to ozone	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
2	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
3	GO:0045550: geranylgeranyl reductase activity	0.00E+00
4	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
5	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
6	GO:0004802: transketolase activity	0.00E+00
7	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
10	GO:0051738: xanthophyll binding	0.00E+00
11	GO:0031409: pigment binding	0.00E+00
12	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
13	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
14	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
15	GO:0016168: chlorophyll binding	1.03E-09
16	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.32E-06
17	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	2.46E-05
18	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.67E-04
19	GO:0009055: electron carrier activity	1.67E-04
20	GO:0004332: fructose-bisphosphate aldolase activity	1.81E-04
21	GO:0016984: ribulose-bisphosphate carboxylase activity	1.81E-04
22	GO:0015140: malate transmembrane transporter activity	8.84E-04
23	GO:0004618: phosphoglycerate kinase activity	8.84E-04
24	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	8.84E-04
25	GO:0015088: copper uptake transmembrane transporter activity	8.84E-04
26	GO:0051537: 2 iron, 2 sulfur cluster binding	9.81E-04
27	GO:0045430: chalcone isomerase activity	2.01E-03
28	GO:0004605: phosphatidate cytidylyltransferase activity	2.01E-03
29	GO:0051920: peroxiredoxin activity	2.01E-03
30	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.01E-03
31	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	3.37E-03
32	GO:0033897: ribonuclease T2 activity	3.37E-03
33	GO:0016872: intramolecular lyase activity	3.37E-03
34	GO:0071949: FAD binding	4.98E-03
35	GO:0004747: ribokinase activity	4.98E-03
36	GO:0004765: shikimate kinase activity	4.98E-03
37	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.98E-03
38	GO:0016209: antioxidant activity	4.98E-03
39	GO:0004470: malic enzyme activity	6.79E-03
40	GO:0070006: metalloaminopeptidase activity	6.79E-03
41	GO:0005381: iron ion transmembrane transporter activity	6.79E-03
42	GO:0008235: metalloexopeptidase activity	8.81E-03
43	GO:0004356: glutamate-ammonia ligase activity	8.81E-03
44	GO:0004834: tryptophan synthase activity	8.81E-03
45	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.10E-02
46	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.10E-02
47	GO:0051287: NAD binding	1.23E-02
48	GO:0051536: iron-sulfur cluster binding	1.30E-02
49	GO:0005215: transporter activity	1.55E-02
50	GO:0004427: inorganic diphosphatase activity	1.59E-02
51	GO:0042578: phosphoric ester hydrolase activity	1.59E-02
52	GO:0008266: poly(U) RNA binding	1.59E-02
53	GO:0004177: aminopeptidase activity	1.86E-02
54	GO:0000049: tRNA binding	1.86E-02
55	GO:0048037: cofactor binding	2.44E-02
56	GO:0003690: double-stranded DNA binding	2.44E-02
57	GO:0046961: proton-transporting ATPase activity, rotational mechanism	3.42E-02
58	GO:0004713: protein tyrosine kinase activity	3.78E-02
59	GO:0042803: protein homodimerization activity	3.83E-02
60	GO:0008080: N-acetyltransferase activity	4.14E-02
61	GO:0016779: nucleotidyltransferase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0030093: chloroplast photosystem I	0.00E+00
2	GO:0009782: photosystem I antenna complex	0.00E+00
3	GO:0009512: cytochrome b6f complex	0.00E+00
4	GO:0009507: chloroplast	7.83E-40
5	GO:0009535: chloroplast thylakoid membrane	2.46E-30
6	GO:0009941: chloroplast envelope	1.03E-23
7	GO:0009579: thylakoid	2.75E-21
8	GO:0009522: photosystem I	9.01E-13
9	GO:0009543: chloroplast thylakoid lumen	1.04E-12
10	GO:0009570: chloroplast stroma	3.14E-12
11	GO:0009534: chloroplast thylakoid	7.98E-11
12	GO:0031977: thylakoid lumen	1.93E-10
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.07E-10
14	GO:0009523: photosystem II	1.13E-09
15	GO:0010287: plastoglobule	2.06E-09
16	GO:0009538: photosystem I reaction center	1.97E-06
17	GO:0016020: membrane	1.91E-04
18	GO:0009508: plastid chromosome	3.17E-04
19	GO:0010319: stromule	4.21E-04
20	GO:0019898: extrinsic component of membrane	4.88E-04
21	GO:0048046: apoplast	6.13E-04
22	GO:0009654: photosystem II oxygen evolving complex	6.97E-04
23	GO:0009517: PSII associated light-harvesting complex II	8.84E-04
24	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	8.84E-04
25	GO:0009528: plastid inner membrane	8.84E-04
26	GO:0042406: extrinsic component of endoplasmic reticulum membrane	8.84E-04
27	GO:0009527: plastid outer membrane	8.84E-04
28	GO:0009533: chloroplast stromal thylakoid	2.01E-03
29	GO:0009295: nucleoid	2.30E-03
30	GO:0042651: thylakoid membrane	3.22E-03
31	GO:0009706: chloroplast inner membrane	9.67E-03
32	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.10E-02
33	GO:0009532: plastid stroma	1.33E-02
34	GO:0005777: peroxisome	4.74E-02