co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G117412

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
2	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
3	GO:0010028: xanthophyll cycle	0.00E+00
4	GO:0032544: plastid translation	0.00E+00
5	GO:0051188: cofactor biosynthetic process	0.00E+00
6	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
7	GO:0042821: pyridoxal biosynthetic process	0.00E+00
8	GO:0042550: photosystem I stabilization	0.00E+00
9	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
10	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.88E-21
11	GO:0010027: thylakoid membrane organization	1.49E-17
12	GO:0010207: photosystem II assembly	1.09E-15
13	GO:0006098: pentose-phosphate shunt	3.91E-15
14	GO:0015995: chlorophyll biosynthetic process	3.55E-12
15	GO:0009773: photosynthetic electron transport in photosystem I	6.68E-11
16	GO:0006364: rRNA processing	8.50E-11
17	GO:0009902: chloroplast relocation	6.48E-10
18	GO:0015979: photosynthesis	1.52E-09
19	GO:0016117: carotenoid biosynthetic process	2.77E-09
20	GO:0042793: transcription from plastid promoter	7.78E-09
21	GO:0043085: positive regulation of catalytic activity	1.08E-07
22	GO:0009767: photosynthetic electron transport chain	3.98E-07
23	GO:0006636: unsaturated fatty acid biosynthetic process	6.21E-07
24	GO:0000023: maltose metabolic process	5.28E-06
25	GO:0000096: sulfur amino acid metabolic process	6.04E-06
26	GO:0045036: protein targeting to chloroplast	1.00E-05
27	GO:0019252: starch biosynthetic process	1.29E-05
28	GO:0006766: vitamin metabolic process	2.48E-05
29	GO:0009108: coenzyme biosynthetic process	2.48E-05
30	GO:0034660: ncRNA metabolic process	2.48E-05
31	GO:0009106: lipoate metabolic process	2.48E-05
32	GO:0080167: response to karrikin	3.30E-05
33	GO:0016226: iron-sulfur cluster assembly	5.31E-05
34	GO:0006412: translation	6.32E-05
35	GO:0006354: DNA-templated transcription, elongation	1.33E-04
36	GO:0006546: glycine catabolic process	1.80E-04
37	GO:0045037: protein import into chloroplast stroma	1.92E-04
38	GO:0009813: flavonoid biosynthetic process	3.35E-04
39	GO:0019748: secondary metabolic process	3.35E-04
40	GO:0030154: cell differentiation	5.53E-04
41	GO:0010155: regulation of proton transport	6.59E-04
42	GO:0009416: response to light stimulus	6.88E-04
43	GO:0010206: photosystem II repair	7.35E-04
44	GO:0046777: protein autophosphorylation	9.06E-04
45	GO:0006573: valine metabolic process	9.18E-04
46	GO:0009768: photosynthesis, light harvesting in photosystem I	9.18E-04
47	GO:0009069: serine family amino acid metabolic process	9.18E-04
48	GO:0019676: ammonia assimilation cycle	9.18E-04
49	GO:0009443: pyridoxal 5'-phosphate salvage	9.18E-04
50	GO:0006434: seryl-tRNA aminoacylation	9.18E-04
51	GO:0009695: jasmonic acid biosynthetic process	1.05E-03
52	GO:0009072: aromatic amino acid family metabolic process	1.30E-03
53	GO:0022900: electron transport chain	1.39E-03
54	GO:0016556: mRNA modification	2.01E-03
55	GO:0009697: salicylic acid biosynthetic process	2.01E-03
56	GO:0006875: cellular metal ion homeostasis	2.08E-03
57	GO:0042372: phylloquinone biosynthetic process	2.08E-03
58	GO:0044272: sulfur compound biosynthetic process	2.08E-03
59	GO:0009735: response to cytokinin	2.15E-03
60	GO:0009073: aromatic amino acid family biosynthetic process	2.38E-03
61	GO:0045893: positive regulation of transcription, DNA-templated	2.50E-03
62	GO:0019344: cysteine biosynthetic process	2.62E-03
63	GO:0019761: glucosinolate biosynthetic process	2.89E-03
64	GO:0006655: phosphatidylglycerol biosynthetic process	3.39E-03
65	GO:0019760: glucosinolate metabolic process	3.49E-03
66	GO:0007186: G-protein coupled receptor signaling pathway	3.49E-03
67	GO:0006733: oxidoreduction coenzyme metabolic process	3.49E-03
68	GO:0016024: CDP-diacylglycerol biosynthetic process	3.49E-03
69	GO:0009658: chloroplast organization	4.53E-03
70	GO:0009595: detection of biotic stimulus	5.15E-03
71	GO:0009117: nucleotide metabolic process	5.15E-03
72	GO:0006353: DNA-templated transcription, termination	5.15E-03
73	GO:0006014: D-ribose metabolic process	5.15E-03
74	GO:0045038: protein import into chloroplast thylakoid membrane	5.15E-03
75	GO:0010196: nonphotochemical quenching	5.15E-03
76	GO:0050821: protein stabilization	5.15E-03
77	GO:0016485: protein processing	5.15E-03
78	GO:0019216: regulation of lipid metabolic process	5.15E-03
79	GO:0006631: fatty acid metabolic process	5.22E-03
80	GO:0019684: photosynthesis, light reaction	5.22E-03
81	GO:0009657: plastid organization	5.22E-03
82	GO:0009966: regulation of signal transduction	5.92E-03
83	GO:0008652: cellular amino acid biosynthetic process	6.61E-03
84	GO:0010103: stomatal complex morphogenesis	6.67E-03
85	GO:0043900: regulation of multi-organism process	7.04E-03
86	GO:0034755: iron ion transmembrane transport	7.04E-03
87	GO:0007568: aging	7.04E-03
88	GO:0015994: chlorophyll metabolic process	7.04E-03
89	GO:0070084: protein initiator methionine removal	7.04E-03
90	GO:0006796: phosphate-containing compound metabolic process	7.04E-03
91	GO:0006569: tryptophan catabolic process	7.04E-03
92	GO:0060416: response to growth hormone	7.04E-03
93	GO:0009772: photosynthetic electron transport in photosystem II	7.04E-03
94	GO:0035304: regulation of protein dephosphorylation	7.47E-03
95	GO:0009817: defense response to fungus, incompatible interaction	8.32E-03
96	GO:0009965: leaf morphogenesis	8.66E-03
97	GO:0006568: tryptophan metabolic process	9.13E-03
98	GO:0009913: epidermal cell differentiation	9.13E-03
99	GO:0007005: mitochondrion organization	9.13E-03
100	GO:0006542: glutamine biosynthetic process	9.13E-03
101	GO:0009704: de-etiolation	1.14E-02
102	GO:0009987: cellular process	1.14E-02
103	GO:0009411: response to UV	1.14E-02
104	GO:0009814: defense response, incompatible interaction	1.14E-02
105	GO:0000413: protein peptidyl-prolyl isomerization	1.22E-02
106	GO:0010310: regulation of hydrogen peroxide metabolic process	1.38E-02
107	GO:0009409: response to cold	1.51E-02
108	GO:0000162: tryptophan biosynthetic process	1.65E-02
109	GO:0015977: carbon fixation	1.65E-02
110	GO:0009637: response to blue light	1.70E-02
111	GO:0042742: defense response to bacterium	1.91E-02
112	GO:0009684: indoleacetic acid biosynthetic process	1.93E-02
113	GO:0010114: response to red light	1.97E-02
114	GO:0006006: glucose metabolic process	2.22E-02
115	GO:0048527: lateral root development	2.22E-02
116	GO:0042773: ATP synthesis coupled electron transport	2.22E-02
117	GO:0006814: sodium ion transport	2.22E-02
118	GO:0010218: response to far red light	2.26E-02
119	GO:0048481: plant ovule development	2.41E-02
120	GO:0009765: photosynthesis, light harvesting	2.53E-02
121	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.53E-02
122	GO:0006418: tRNA aminoacylation for protein translation	2.57E-02
123	GO:0046854: phosphatidylinositol phosphorylation	2.86E-02
124	GO:0031408: oxylipin biosynthetic process	3.20E-02
125	GO:0007030: Golgi organization	3.55E-02
126	GO:0010228: vegetative to reproductive phase transition of meristem	3.63E-02
127	GO:0006096: glycolytic process	3.83E-02
128	GO:0006833: water transport	3.92E-02
129	GO:0006972: hyperosmotic response	3.92E-02
130	GO:0042545: cell wall modification	3.92E-02
131	GO:0009750: response to fructose	3.92E-02
132	GO:0009749: response to glucose	4.30E-02
133	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	4.69E-02
134	GO:0006417: regulation of translation	4.69E-02
135	GO:0018298: protein-chromophore linkage	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0051738: xanthophyll binding	0.00E+00
3	GO:0031409: pigment binding	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
6	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
7	GO:0005504: fatty acid binding	0.00E+00
8	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
9	GO:0045550: geranylgeranyl reductase activity	0.00E+00
10	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
11	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
12	GO:0004802: transketolase activity	0.00E+00
13	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
14	GO:0045430: chalcone isomerase activity	2.62E-05
15	GO:0016872: intramolecular lyase activity	8.91E-05
16	GO:0051537: 2 iron, 2 sulfur cluster binding	9.47E-05
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.56E-05
18	GO:0003735: structural constituent of ribosome	2.75E-04
19	GO:0016168: chlorophyll binding	6.59E-04
20	GO:0009055: electron carrier activity	7.36E-04
21	GO:0004618: phosphoglycerate kinase activity	9.18E-04
22	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	9.18E-04
23	GO:0015088: copper uptake transmembrane transporter activity	9.18E-04
24	GO:0004828: serine-tRNA ligase activity	9.18E-04
25	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	9.18E-04
26	GO:0070402: NADPH binding	9.18E-04
27	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	2.08E-03
28	GO:0004605: phosphatidate cytidylyltransferase activity	2.08E-03
29	GO:0051536: iron-sulfur cluster binding	2.86E-03
30	GO:0033897: ribonuclease T2 activity	3.49E-03
31	GO:0004765: shikimate kinase activity	5.15E-03
32	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	5.15E-03
33	GO:0016984: ribulose-bisphosphate carboxylase activity	5.15E-03
34	GO:0016209: antioxidant activity	5.15E-03
35	GO:0071949: FAD binding	5.15E-03
36	GO:0004332: fructose-bisphosphate aldolase activity	5.15E-03
37	GO:0004747: ribokinase activity	5.15E-03
38	GO:0005381: iron ion transmembrane transporter activity	7.04E-03
39	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	7.04E-03
40	GO:0070006: metalloaminopeptidase activity	7.04E-03
41	GO:0004356: glutamate-ammonia ligase activity	9.13E-03
42	GO:0004834: tryptophan synthase activity	9.13E-03
43	GO:0008235: metalloexopeptidase activity	9.13E-03
44	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.14E-02
45	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.45E-02
46	GO:0004427: inorganic diphosphatase activity	1.65E-02
47	GO:0008236: serine-type peptidase activity	1.70E-02
48	GO:0000049: tRNA binding	1.93E-02
49	GO:0004177: aminopeptidase activity	1.93E-02
50	GO:0003690: double-stranded DNA binding	2.53E-02
51	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.53E-02
52	GO:0004812: aminoacyl-tRNA ligase activity	2.90E-02
53	GO:0048038: quinone binding	3.55E-02
54	GO:0004713: protein tyrosine kinase activity	3.92E-02
55	GO:0030145: manganese ion binding	4.30E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0009512: cytochrome b6f complex	0.00E+00
3	GO:0030093: chloroplast photosystem I	0.00E+00
4	GO:0009507: chloroplast	9.16E-38
5	GO:0009570: chloroplast stroma	1.99E-26
6	GO:0009941: chloroplast envelope	3.17E-22
7	GO:0009535: chloroplast thylakoid membrane	3.90E-22
8	GO:0009579: thylakoid	6.01E-16
9	GO:0009543: chloroplast thylakoid lumen	1.14E-10
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.96E-10
11	GO:0031977: thylakoid lumen	1.74E-07
12	GO:0009534: chloroplast thylakoid	1.03E-06
13	GO:0005840: ribosome	4.30E-06
14	GO:0009523: photosystem II	2.69E-04
15	GO:0009528: plastid inner membrane	9.18E-04
16	GO:0042406: extrinsic component of endoplasmic reticulum membrane	9.18E-04
17	GO:0000311: plastid large ribosomal subunit	9.18E-04
18	GO:0009527: plastid outer membrane	9.18E-04
19	GO:0009517: PSII associated light-harvesting complex II	9.18E-04
20	GO:0030529: intracellular ribonucleoprotein complex	1.57E-03
21	GO:0010319: stromule	3.18E-03
22	GO:0055028: cortical microtubule	3.49E-03
23	GO:0010287: plastoglobule	6.61E-03
24	GO:0009508: plastid chromosome	7.04E-03
25	GO:0019898: extrinsic component of membrane	9.13E-03
26	GO:0009654: photosystem II oxygen evolving complex	1.14E-02
27	GO:0009532: plastid stroma	1.38E-02
28	GO:0048046: apoplast	1.96E-02
29	GO:0015934: large ribosomal subunit	1.97E-02
30	GO:0009295: nucleoid	2.53E-02
31	GO:0042651: thylakoid membrane	3.20E-02
32	GO:0005622: intracellular	4.06E-02
33	GO:0046658: anchored component of plasma membrane	4.30E-02