co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G117298

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032544: plastid translation	0.00E+00
2	GO:0071486: cellular response to high light intensity	0.00E+00
3	GO:0043043: peptide biosynthetic process	0.00E+00
4	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
5	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
6	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.03E-18
7	GO:0006412: translation	6.36E-16
8	GO:0010027: thylakoid membrane organization	1.38E-12
9	GO:0045036: protein targeting to chloroplast	2.33E-10
10	GO:0015995: chlorophyll biosynthetic process	1.45E-09
11	GO:0010207: photosystem II assembly	6.41E-09
12	GO:0006098: pentose-phosphate shunt	7.66E-08
13	GO:0016226: iron-sulfur cluster assembly	2.21E-07
14	GO:0009902: chloroplast relocation	1.33E-06
15	GO:0016117: carotenoid biosynthetic process	3.22E-06
16	GO:0010236: plastoquinone biosynthetic process	8.23E-06
17	GO:0042372: phylloquinone biosynthetic process	8.23E-06
18	GO:0006364: rRNA processing	8.71E-06
19	GO:0006733: oxidoreduction coenzyme metabolic process	2.94E-05
20	GO:0006354: DNA-templated transcription, elongation	3.16E-05
21	GO:0009117: nucleotide metabolic process	6.64E-05
22	GO:0042793: transcription from plastid promoter	7.64E-05
23	GO:0006636: unsaturated fatty acid biosynthetic process	9.74E-05
24	GO:0000096: sulfur amino acid metabolic process	1.20E-04
25	GO:0019748: secondary metabolic process	1.20E-04
26	GO:0006418: tRNA aminoacylation for protein translation	1.47E-04
27	GO:0009658: chloroplast organization	1.47E-04
28	GO:0019684: photosynthesis, light reaction	1.49E-04
29	GO:0009773: photosynthetic electron transport in photosystem I	2.56E-04
30	GO:0006766: vitamin metabolic process	2.80E-04
31	GO:0009108: coenzyme biosynthetic process	2.80E-04
32	GO:0010206: photosystem II repair	2.80E-04
33	GO:0009106: lipoate metabolic process	2.80E-04
34	GO:0006430: lysyl-tRNA aminoacylation	4.80E-04
35	GO:0008361: regulation of cell size	4.80E-04
36	GO:0006434: seryl-tRNA aminoacylation	4.80E-04
37	GO:0006573: valine metabolic process	4.80E-04
38	GO:0009069: serine family amino acid metabolic process	4.80E-04
39	GO:0009735: response to cytokinin	6.49E-04
40	GO:0006546: glycine catabolic process	9.74E-04
41	GO:0048653: anther development	1.12E-03
42	GO:0044272: sulfur compound biosynthetic process	1.12E-03
43	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.12E-03
44	GO:0048481: plant ovule development	1.29E-03
45	GO:0006655: phosphatidylglycerol biosynthetic process	1.37E-03
46	GO:0009793: embryo development ending in seed dormancy	1.66E-03
47	GO:0016024: CDP-diacylglycerol biosynthetic process	1.88E-03
48	GO:0034599: cellular response to oxidative stress	1.88E-03
49	GO:0030154: cell differentiation	2.09E-03
50	GO:0010228: vegetative to reproductive phase transition of meristem	2.18E-03
51	GO:0007389: pattern specification process	2.72E-03
52	GO:0019216: regulation of lipid metabolic process	2.72E-03
53	GO:0035304: regulation of protein dephosphorylation	2.95E-03
54	GO:0046777: protein autophosphorylation	2.95E-03
55	GO:0009695: jasmonic acid biosynthetic process	3.29E-03
56	GO:0010189: vitamin E biosynthetic process	3.72E-03
57	GO:0006569: tryptophan catabolic process	3.72E-03
58	GO:0009088: threonine biosynthetic process	3.72E-03
59	GO:0009772: photosynthetic electron transport in photosystem II	3.72E-03
60	GO:0042742: defense response to bacterium	3.78E-03
61	GO:0007005: mitochondrion organization	4.81E-03
62	GO:0009814: defense response, incompatible interaction	5.98E-03
63	GO:0034660: ncRNA metabolic process	5.98E-03
64	GO:0006801: superoxide metabolic process	5.98E-03
65	GO:0009926: auxin polar transport	5.98E-03
66	GO:0010205: photoinhibition	5.98E-03
67	GO:0009073: aromatic amino acid family biosynthetic process	6.23E-03
68	GO:0030245: cellulose catabolic process	7.27E-03
69	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	8.62E-03
70	GO:0040007: growth	8.62E-03
71	GO:0010015: root morphogenesis	8.62E-03
72	GO:0009072: aromatic amino acid family metabolic process	8.62E-03
73	GO:0009409: response to cold	8.68E-03
74	GO:0009684: indoleacetic acid biosynthetic process	1.01E-02
75	GO:0009407: toxin catabolic process	1.01E-02
76	GO:0010411: xyloglucan metabolic process	1.01E-02
77	GO:0009832: plant-type cell wall biogenesis	1.01E-02
78	GO:0006414: translational elongation	1.15E-02
79	GO:0016556: mRNA modification	1.16E-02
80	GO:0009697: salicylic acid biosynthetic process	1.16E-02
81	GO:0006073: cellular glucan metabolic process	1.16E-02
82	GO:0008652: cellular amino acid biosynthetic process	1.37E-02
83	GO:0042546: cell wall biogenesis	1.49E-02
84	GO:0043085: positive regulation of catalytic activity	1.61E-02
85	GO:0031408: oxylipin biosynthetic process	1.66E-02
86	GO:0009965: leaf morphogenesis	1.69E-02
87	GO:0010075: regulation of meristem growth	1.85E-02
88	GO:0042545: cell wall modification	2.04E-02
89	GO:0007623: circadian rhythm	2.23E-02
90	GO:0009657: plastid organization	2.23E-02
91	GO:0045893: positive regulation of transcription, DNA-templated	2.24E-02
92	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.44E-02
93	GO:0009664: plant-type cell wall organization	2.44E-02
94	GO:0010155: regulation of proton transport	2.44E-02
95	GO:0010103: stomatal complex morphogenesis	2.65E-02
96	GO:0009817: defense response to fungus, incompatible interaction	3.08E-02
97	GO:0035556: intracellular signal transduction	3.55E-02
98	GO:0042254: ribosome biogenesis	3.55E-02
99	GO:0015979: photosynthesis	3.99E-02
100	GO:0006520: cellular amino acid metabolic process	4.03E-02
101	GO:0000160: phosphorelay signal transduction system	4.29E-02
102	GO:0006184: obsolete GTP catabolic process	4.69E-02
103	GO:0006662: glycerol ether metabolic process	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
2	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
3	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0003735: structural constituent of ribosome	1.15E-14
6	GO:0004812: aminoacyl-tRNA ligase activity	1.85E-04
7	GO:0019843: rRNA binding	4.55E-04
8	GO:0004828: serine-tRNA ligase activity	4.80E-04
9	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	4.80E-04
10	GO:0004831: tyrosine-tRNA ligase activity	4.80E-04
11	GO:0004795: threonine synthase activity	4.80E-04
12	GO:0004824: lysine-tRNA ligase activity	4.80E-04
13	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	4.80E-04
14	GO:0004605: phosphatidate cytidylyltransferase activity	1.12E-03
15	GO:0051920: peroxiredoxin activity	1.12E-03
16	GO:0045485: omega-6 fatty acid desaturase activity	1.12E-03
17	GO:0033897: ribonuclease T2 activity	1.88E-03
18	GO:0016209: antioxidant activity	2.72E-03
19	GO:0003913: DNA photolyase activity	2.72E-03
20	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	2.72E-03
21	GO:0004659: prenyltransferase activity	2.72E-03
22	GO:0004765: shikimate kinase activity	2.72E-03
23	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.72E-03
24	GO:0003723: RNA binding	4.51E-03
25	GO:0008810: cellulase activity	5.98E-03
26	GO:0004784: superoxide dismutase activity	7.27E-03
27	GO:0008312: 7S RNA binding	7.27E-03
28	GO:0003746: translation elongation factor activity	8.38E-03
29	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.01E-02
30	GO:0000049: tRNA binding	1.01E-02
31	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.16E-02
32	GO:0003993: acid phosphatase activity	1.49E-02
33	GO:0008081: phosphoric diester hydrolase activity	1.85E-02
34	GO:0000156: phosphorelay response regulator activity	1.85E-02
35	GO:0016760: cellulose synthase (UDP-forming) activity	1.85E-02
36	GO:0031072: heat shock protein binding	3.08E-02
37	GO:0004497: monooxygenase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.25E-30
2	GO:0009570: chloroplast stroma	1.41E-27
3	GO:0009941: chloroplast envelope	3.22E-20
4	GO:0005840: ribosome	3.27E-19
5	GO:0009579: thylakoid	1.17E-10
6	GO:0030529: intracellular ribonucleoprotein complex	3.20E-08
7	GO:0005622: intracellular	5.68E-08
8	GO:0009535: chloroplast thylakoid membrane	9.65E-08
9	GO:0009543: chloroplast thylakoid lumen	2.06E-06
10	GO:0000311: plastid large ribosomal subunit	4.80E-04
11	GO:0009295: nucleoid	9.74E-04
12	GO:0015934: large ribosomal subunit	9.82E-04
13	GO:0009534: chloroplast thylakoid	2.03E-03
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.81E-03
15	GO:0048500: signal recognition particle	5.98E-03
16	GO:0031977: thylakoid lumen	8.38E-03
17	GO:0048046: apoplast	3.57E-02