co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G113181

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
2	GO:0042780: tRNA 3'-end processing	0.00E+00
3	GO:1900865: chloroplast RNA modification	0.00E+00
4	GO:0010157: response to chlorate	0.00E+00
5	GO:0043686: co-translational protein modification	0.00E+00
6	GO:0090391: granum assembly	0.00E+00
7	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
8	GO:0043953: protein transport by the Tat complex	0.00E+00
9	GO:0000372: Group I intron splicing	0.00E+00
10	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
11	GO:0032543: mitochondrial translation	0.00E+00
12	GO:0046506: sulfolipid biosynthetic process	0.00E+00
13	GO:0010117: photoprotection	0.00E+00
14	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
15	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
16	GO:0009658: chloroplast organization	1.46E-12
17	GO:0006457: protein folding	5.67E-08
18	GO:0006364: rRNA processing	4.39E-07
19	GO:0042793: transcription from plastid promoter	6.07E-07
20	GO:0006399: tRNA metabolic process	1.07E-06
21	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.66E-06
22	GO:0045893: positive regulation of transcription, DNA-templated	9.51E-06
23	GO:0009902: chloroplast relocation	2.02E-05
24	GO:1901671: positive regulation of superoxide dismutase activity	3.19E-05
25	GO:0010027: thylakoid membrane organization	1.57E-04
26	GO:0006779: porphyrin-containing compound biosynthetic process	2.28E-04
27	GO:0045038: protein import into chloroplast thylakoid membrane	2.30E-04
28	GO:0045037: protein import into chloroplast stroma	2.30E-04
29	GO:0006353: DNA-templated transcription, termination	2.30E-04
30	GO:0045036: protein targeting to chloroplast	2.98E-04
31	GO:0006655: phosphatidylglycerol biosynthetic process	3.77E-04
32	GO:0010468: regulation of gene expression	3.96E-04
33	GO:0019344: cysteine biosynthetic process	4.67E-04
34	GO:0009306: protein secretion	6.09E-04
35	GO:0033014: tetrapyrrole biosynthetic process	8.69E-04
36	GO:0010206: photosystem II repair	8.69E-04
37	GO:0019538: protein metabolic process	8.69E-04
38	GO:0051512: positive regulation of unidimensional cell growth	1.03E-03
39	GO:0006429: leucyl-tRNA aminoacylation	1.03E-03
40	GO:0010587: miRNA catabolic process	1.03E-03
41	GO:0009968: negative regulation of signal transduction	1.03E-03
42	GO:0006591: ornithine metabolic process	1.03E-03
43	GO:0006788: heme oxidation	1.03E-03
44	GO:0043157: response to cation stress	1.03E-03
45	GO:0071722: detoxification of arsenic-containing substance	1.03E-03
46	GO:0080141: regulation of jasmonic acid biosynthetic process	1.03E-03
47	GO:0035304: regulation of protein dephosphorylation	1.12E-03
48	GO:0010024: phytochromobilin biosynthetic process	2.31E-03
49	GO:0009102: biotin biosynthetic process	2.31E-03
50	GO:0009642: response to light intensity	2.31E-03
51	GO:0010380: regulation of chlorophyll biosynthetic process	2.31E-03
52	GO:0019464: glycine decarboxylation via glycine cleavage system	2.31E-03
53	GO:0030308: negative regulation of cell growth	2.31E-03
54	GO:0019481: L-alanine catabolic process, by transamination	2.31E-03
55	GO:0010207: photosystem II assembly	2.60E-03
56	GO:0006546: glycine catabolic process	2.82E-03
57	GO:0009073: aromatic amino acid family biosynthetic process	2.92E-03
58	GO:0000304: response to singlet oxygen	3.91E-03
59	GO:0006450: regulation of translational fidelity	3.91E-03
60	GO:0006733: oxidoreduction coenzyme metabolic process	3.91E-03
61	GO:0051085: chaperone mediated protein folding requiring cofactor	3.91E-03
62	GO:0016075: rRNA catabolic process	3.91E-03
63	GO:0006431: methionyl-tRNA aminoacylation	3.91E-03
64	GO:0030497: fatty acid elongation	3.91E-03
65	GO:0009247: glycolipid biosynthetic process	3.91E-03
66	GO:0015867: ATP transport	3.91E-03
67	GO:0051607: defense response to virus	4.00E-03
68	GO:0000373: Group II intron splicing	5.77E-03
69	GO:0042026: protein refolding	5.77E-03
70	GO:0006782: protoporphyrinogen IX biosynthetic process	5.77E-03
71	GO:0006165: nucleoside diphosphate phosphorylation	5.77E-03
72	GO:0006790: sulfur compound metabolic process	5.77E-03
73	GO:0006228: UTP biosynthetic process	5.77E-03
74	GO:0010417: glucuronoxylan biosynthetic process	5.77E-03
75	GO:0009117: nucleotide metabolic process	5.77E-03
76	GO:0019375: galactolipid biosynthetic process	5.77E-03
77	GO:0006183: GTP biosynthetic process	5.77E-03
78	GO:0006401: RNA catabolic process	5.77E-03
79	GO:0006241: CTP biosynthetic process	5.77E-03
80	GO:0009408: response to heat	5.87E-03
81	GO:0030154: cell differentiation	6.13E-03
82	GO:0010267: production of ta-siRNAs involved in RNA interference	6.96E-03
83	GO:0035196: production of miRNAs involved in gene silencing by miRNA	6.96E-03
84	GO:0044267: cellular protein metabolic process	6.96E-03
85	GO:0009409: response to cold	7.25E-03
86	GO:0009627: systemic acquired resistance	7.85E-03
87	GO:0010072: primary shoot apical meristem specification	7.88E-03
88	GO:0006081: cellular aldehyde metabolic process	7.88E-03
89	GO:0019748: secondary metabolic process	7.88E-03
90	GO:0015995: chlorophyll biosynthetic process	8.13E-03
91	GO:0006508: proteolysis	8.53E-03
92	GO:0031347: regulation of defense response	1.02E-02
93	GO:0009097: isoleucine biosynthetic process	1.02E-02
94	GO:0006749: glutathione metabolic process	1.02E-02
95	GO:0009108: coenzyme biosynthetic process	1.28E-02
96	GO:0006189: 'de novo' IMP biosynthetic process	1.28E-02
97	GO:0034660: ncRNA metabolic process	1.28E-02
98	GO:0009106: lipoate metabolic process	1.28E-02
99	GO:0032880: regulation of protein localization	1.28E-02
100	GO:0009704: de-etiolation	1.28E-02
101	GO:0006766: vitamin metabolic process	1.28E-02
102	GO:0009411: response to UV	1.28E-02
103	GO:0006520: cellular amino acid metabolic process	1.44E-02
104	GO:0009628: response to abiotic stimulus	1.55E-02
105	GO:0051604: protein maturation	1.55E-02
106	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.85E-02
107	GO:0045087: innate immune response	1.85E-02
108	GO:0001666: response to hypoxia	1.85E-02
109	GO:0009585: red, far-red light phototransduction	1.85E-02
110	GO:0009407: toxin catabolic process	2.16E-02
111	GO:0000302: response to reactive oxygen species	2.16E-02
112	GO:0009834: plant-type secondary cell wall biogenesis	2.16E-02
113	GO:0016226: iron-sulfur cluster assembly	2.48E-02
114	GO:0016556: mRNA modification	2.49E-02
115	GO:0006098: pentose-phosphate shunt	2.78E-02
116	GO:0048481: plant ovule development	2.83E-02
117	GO:0000023: maltose metabolic process	2.83E-02
118	GO:0045492: xylan biosynthetic process	2.84E-02
119	GO:0006418: tRNA aminoacylation for protein translation	3.02E-02
120	GO:0046854: phosphatidylinositol phosphorylation	3.20E-02
121	GO:0031408: oxylipin biosynthetic process	3.59E-02
122	GO:0048316: seed development	3.59E-02
123	GO:0005982: starch metabolic process	3.98E-02
124	GO:0006636: unsaturated fatty acid biosynthetic process	3.98E-02
125	GO:0042545: cell wall modification	4.40E-02
126	GO:0045454: cell redox homeostasis	4.51E-02
127	GO:0006200: obsolete ATP catabolic process	4.73E-02
128	GO:0019684: photosynthesis, light reaction	4.82E-02
129	GO:0009657: plastid organization	4.82E-02
130	GO:0009965: leaf morphogenesis	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
2	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
3	GO:0004076: biotin synthase activity	0.00E+00
4	GO:0046408: chlorophyll synthetase activity	0.00E+00
5	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
6	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
7	GO:0042586: peptide deformylase activity	0.00E+00
8	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
9	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
10	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
11	GO:0004252: serine-type endopeptidase activity	1.89E-05
12	GO:0000774: adenyl-nucleotide exchange factor activity	1.07E-04
13	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	8.69E-04
14	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.03E-03
15	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.03E-03
16	GO:0004362: glutathione-disulfide reductase activity	1.03E-03
17	GO:0004585: ornithine carbamoyltransferase activity	1.03E-03
18	GO:0008146: sulfotransferase activity	1.03E-03
19	GO:0003989: acetyl-CoA carboxylase activity	1.03E-03
20	GO:0004823: leucine-tRNA ligase activity	1.03E-03
21	GO:0004794: L-threonine ammonia-lyase activity	1.03E-03
22	GO:0051087: chaperone binding	1.18E-03
23	GO:0051082: unfolded protein binding	2.08E-03
24	GO:0005496: steroid binding	2.31E-03
25	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.31E-03
26	GO:0047134: protein-disulfide reductase activity	2.31E-03
27	GO:0004462: lactoylglutathione lyase activity	2.31E-03
28	GO:0019204: obsolete nucleotide phosphatase activity	2.31E-03
29	GO:0004853: uroporphyrinogen decarboxylase activity	2.31E-03
30	GO:0005347: ATP transmembrane transporter activity	2.31E-03
31	GO:0004075: biotin carboxylase activity	2.31E-03
32	GO:0004392: heme oxygenase (decyclizing) activity	2.31E-03
33	GO:0046914: transition metal ion binding	2.34E-03
34	GO:0004825: methionine-tRNA ligase activity	3.91E-03
35	GO:0016743: carboxyl- or carbamoyltransferase activity	3.91E-03
36	GO:0015020: glucuronosyltransferase activity	3.91E-03
37	GO:0080116: glucuronoxylan glucuronosyltransferase activity	3.91E-03
38	GO:0004550: nucleoside diphosphate kinase activity	5.77E-03
39	GO:0070569: uridylyltransferase activity	5.77E-03
40	GO:0004659: prenyltransferase activity	5.77E-03
41	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	5.77E-03
42	GO:0004765: shikimate kinase activity	5.77E-03
43	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	5.77E-03
44	GO:0016987: sigma factor activity	7.88E-03
45	GO:0008233: peptidase activity	8.27E-03
46	GO:0008565: protein transporter activity	9.79E-03
47	GO:0031072: heat shock protein binding	9.79E-03
48	GO:0042803: protein homodimerization activity	9.98E-03
49	GO:0008173: RNA methyltransferase activity	1.02E-02
50	GO:0004525: ribonuclease III activity	1.28E-02
51	GO:0005507: copper ion binding	1.34E-02
52	GO:0043022: ribosome binding	1.55E-02
53	GO:0008266: poly(U) RNA binding	1.85E-02
54	GO:0008236: serine-type peptidase activity	2.00E-02
55	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.16E-02
56	GO:0043531: ADP binding	2.84E-02
57	GO:0004812: aminoacyl-tRNA ligase activity	3.41E-02
58	GO:0005524: ATP binding	3.52E-02
59	GO:0030170: pyridoxal phosphate binding	3.73E-02
60	GO:0016831: carboxy-lyase activity	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009526: plastid envelope	0.00E+00
3	GO:0042646: plastid nucleoid	0.00E+00
4	GO:0055035: plastid thylakoid membrane	0.00E+00
5	GO:0009507: chloroplast	1.71E-25
6	GO:0009941: chloroplast envelope	5.47E-17
7	GO:0009570: chloroplast stroma	9.18E-16
8	GO:0009532: plastid stroma	8.38E-11
9	GO:0009579: thylakoid	8.53E-09
10	GO:0009535: chloroplast thylakoid membrane	1.49E-08
11	GO:0009840: chloroplastic endopeptidase Clp complex	7.94E-06
12	GO:0009534: chloroplast thylakoid	2.30E-04
13	GO:0019867: outer membrane	1.03E-03
14	GO:0005960: glycine cleavage complex	1.03E-03
15	GO:0080085: signal recognition particle, chloroplast targeting	1.03E-03
16	GO:0009536: plastid	1.11E-03
17	GO:0005759: mitochondrial matrix	2.13E-03
18	GO:0009533: chloroplast stromal thylakoid	2.31E-03
19	GO:0010319: stromule	3.93E-03
20	GO:0042651: thylakoid membrane	4.00E-03
21	GO:0009707: chloroplast outer membrane	7.88E-03
22	GO:0019898: extrinsic component of membrane	1.02E-02
23	GO:0009706: chloroplast inner membrane	1.20E-02
24	GO:0009654: photosystem II oxygen evolving complex	1.28E-02
25	GO:0005739: mitochondrion	2.23E-02
26	GO:0031977: thylakoid lumen	2.48E-02
27	GO:0048046: apoplast	2.66E-02
28	GO:0009295: nucleoid	2.84E-02