co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G113137

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090391: granum assembly	0.00E+00
2	GO:0010117: photoprotection	0.00E+00
3	GO:0045037: protein import into chloroplast stroma	2.57E-05
4	GO:0009658: chloroplast organization	3.25E-05
5	GO:0010206: photosystem II repair	1.16E-04
6	GO:0019538: protein metabolic process	1.16E-04
7	GO:0051512: positive regulation of unidimensional cell growth	2.75E-04
8	GO:0010587: miRNA catabolic process	2.75E-04
9	GO:0009968: negative regulation of signal transduction	2.75E-04
10	GO:0043157: response to cation stress	2.75E-04
11	GO:0018160: peptidyl-pyrromethane cofactor linkage	2.75E-04
12	GO:0080141: regulation of jasmonic acid biosynthetic process	2.75E-04
13	GO:0009102: biotin biosynthetic process	6.51E-04
14	GO:0010380: regulation of chlorophyll biosynthetic process	6.51E-04
15	GO:1901671: positive regulation of superoxide dismutase activity	6.51E-04
16	GO:0051555: flavonol biosynthetic process	6.51E-04
17	GO:0019481: L-alanine catabolic process, by transamination	6.51E-04
18	GO:0000304: response to singlet oxygen	1.11E-03
19	GO:0006571: tyrosine biosynthetic process	1.11E-03
20	GO:0030497: fatty acid elongation	1.11E-03
21	GO:0015867: ATP transport	1.11E-03
22	GO:0006790: sulfur compound metabolic process	1.63E-03
23	GO:0006353: DNA-templated transcription, termination	1.63E-03
24	GO:0006401: RNA catabolic process	1.63E-03
25	GO:0010072: primary shoot apical meristem specification	2.18E-03
26	GO:0006081: cellular aldehyde metabolic process	2.18E-03
27	GO:0009813: flavonoid biosynthetic process	2.18E-03
28	GO:0010468: regulation of gene expression	2.18E-03
29	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.56E-03
30	GO:0031347: regulation of defense response	2.79E-03
31	GO:0006633: fatty acid biosynthetic process	2.93E-03
32	GO:0033014: tetrapyrrole biosynthetic process	3.49E-03
33	GO:0032880: regulation of protein localization	3.49E-03
34	GO:0006457: protein folding	3.71E-03
35	GO:0009628: response to abiotic stimulus	4.23E-03
36	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	5.01E-03
37	GO:0001666: response to hypoxia	5.01E-03
38	GO:0000302: response to reactive oxygen species	5.83E-03
39	GO:0006284: base-excision repair	6.72E-03
40	GO:0046854: phosphatidylinositol phosphorylation	8.60E-03
41	GO:0006655: phosphatidylglycerol biosynthetic process	9.61E-03
42	GO:0031408: oxylipin biosynthetic process	9.61E-03
43	GO:0042793: transcription from plastid promoter	9.61E-03
44	GO:0006508: proteolysis	1.07E-02
45	GO:0009416: response to light stimulus	1.26E-02
46	GO:0044267: cellular protein metabolic process	1.40E-02
47	GO:0009627: systemic acquired resistance	1.52E-02
48	GO:0035304: regulation of protein dephosphorylation	1.64E-02
49	GO:0080167: response to karrikin	1.76E-02
50	GO:0048367: shoot system development	1.77E-02
51	GO:0009738: abscisic acid-activated signaling pathway	1.90E-02
52	GO:0006886: intracellular protein transport	2.04E-02
53	GO:0006184: obsolete GTP catabolic process	2.15E-02
54	GO:0009902: chloroplast relocation	2.31E-02
55	GO:0009933: meristem structural organization	2.31E-02
56	GO:0030163: protein catabolic process	2.46E-02
57	GO:0048573: photoperiodism, flowering	2.61E-02
58	GO:0009735: response to cytokinin	2.61E-02
59	GO:0009624: response to nematode	4.79E-02
60	GO:0015995: chlorophyll biosynthetic process	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0045431: flavonol synthase activity	0.00E+00
2	GO:0004076: biotin synthase activity	0.00E+00
3	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
4	GO:0004252: serine-type endopeptidase activity	2.21E-04
5	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.75E-04
6	GO:0031177: phosphopantetheine binding	2.75E-04
7	GO:0003989: acetyl-CoA carboxylase activity	2.75E-04
8	GO:0004418: hydroxymethylbilane synthase activity	2.75E-04
9	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.82E-04
10	GO:0008977: prephenate dehydrogenase (NAD+) activity	6.51E-04
11	GO:0004665: prephenate dehydrogenase (NADP+) activity	6.51E-04
12	GO:0019204: obsolete nucleotide phosphatase activity	6.51E-04
13	GO:0005347: ATP transmembrane transporter activity	6.51E-04
14	GO:0004075: biotin carboxylase activity	6.51E-04
15	GO:0042803: protein homodimerization activity	9.10E-04
16	GO:0000774: adenyl-nucleotide exchange factor activity	1.11E-03
17	GO:0008725: DNA-3-methyladenine glycosylase activity	1.11E-03
18	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	1.63E-03
19	GO:0051087: chaperone binding	4.23E-03
20	GO:0046914: transition metal ion binding	6.72E-03
21	GO:0048037: cofactor binding	7.64E-03
22	GO:0043531: ADP binding	7.64E-03
23	GO:0016746: transferase activity, transferring acyl groups	8.51E-03
24	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.29E-02
25	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.76E-02
26	GO:0005525: GTP binding	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0019867: outer membrane	0.00E+00
2	GO:0009941: chloroplast envelope	3.07E-12
3	GO:0009507: chloroplast	2.78E-08
4	GO:0009532: plastid stroma	2.38E-06
5	GO:0009707: chloroplast outer membrane	4.78E-05
6	GO:0009570: chloroplast stroma	1.53E-04
7	GO:0009526: plastid envelope	2.75E-04
8	GO:0009533: chloroplast stromal thylakoid	6.51E-04
9	GO:0009706: chloroplast inner membrane	1.87E-03
10	GO:0009840: chloroplastic endopeptidase Clp complex	2.18E-03
11	GO:0009536: plastid	5.52E-03
12	GO:0042651: thylakoid membrane	9.61E-03
13	GO:0009535: chloroplast thylakoid membrane	1.24E-02
14	GO:0009579: thylakoid	1.82E-02
15	GO:0005759: mitochondrial matrix	2.31E-02