co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G113073

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
2	GO:0043686: co-translational protein modification	0.00E+00
3	GO:0090391: granum assembly	0.00E+00
4	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
5	GO:0006779: porphyrin-containing compound biosynthetic process	5.97E-09
6	GO:0009658: chloroplast organization	4.81E-06
7	GO:0006457: protein folding	7.55E-06
8	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	8.58E-06
9	GO:0009098: leucine biosynthetic process	4.82E-05
10	GO:0006782: protoporphyrinogen IX biosynthetic process	4.82E-05
11	GO:0010027: thylakoid membrane organization	5.68E-05
12	GO:0033014: tetrapyrrole biosynthetic process	2.08E-04
13	GO:0009082: branched-chain amino acid biosynthetic process	2.88E-04
14	GO:0006364: rRNA processing	3.43E-04
15	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	3.97E-04
16	GO:0006430: lysyl-tRNA aminoacylation	3.97E-04
17	GO:0009168: purine ribonucleoside monophosphate biosynthetic process	3.97E-04
18	GO:0006429: leucyl-tRNA aminoacylation	3.97E-04
19	GO:0032264: IMP salvage	3.97E-04
20	GO:0010190: cytochrome b6f complex assembly	3.97E-04
21	GO:0006788: heme oxidation	3.97E-04
22	GO:0032543: mitochondrial translation	3.97E-04
23	GO:0010024: phytochromobilin biosynthetic process	9.31E-04
24	GO:0010380: regulation of chlorophyll biosynthetic process	9.31E-04
25	GO:1901671: positive regulation of superoxide dismutase activity	9.31E-04
26	GO:0019464: glycine decarboxylation via glycine cleavage system	9.31E-04
27	GO:0042793: transcription from plastid promoter	1.05E-03
28	GO:0015995: chlorophyll biosynthetic process	1.45E-03
29	GO:0019760: glucosinolate metabolic process	1.57E-03
30	GO:0000304: response to singlet oxygen	1.57E-03
31	GO:0006450: regulation of translational fidelity	1.57E-03
32	GO:0051085: chaperone mediated protein folding requiring cofactor	1.57E-03
33	GO:0016075: rRNA catabolic process	1.57E-03
34	GO:0006188: IMP biosynthetic process	1.57E-03
35	GO:0044267: cellular protein metabolic process	1.82E-03
36	GO:0035304: regulation of protein dephosphorylation	2.27E-03
37	GO:0010207: photosystem II assembly	2.27E-03
38	GO:0006241: CTP biosynthetic process	2.28E-03
39	GO:0042026: protein refolding	2.28E-03
40	GO:0006165: nucleoside diphosphate phosphorylation	2.28E-03
41	GO:0006228: UTP biosynthetic process	2.28E-03
42	GO:0010417: glucuronoxylan biosynthetic process	2.28E-03
43	GO:0045037: protein import into chloroplast stroma	2.28E-03
44	GO:0006353: DNA-templated transcription, termination	2.28E-03
45	GO:0006183: GTP biosynthetic process	2.28E-03
46	GO:0009902: chloroplast relocation	3.71E-03
47	GO:0009306: protein secretion	3.99E-03
48	GO:0006749: glutathione metabolic process	3.99E-03
49	GO:0009735: response to cytokinin	4.40E-03
50	GO:0009411: response to UV	4.97E-03
51	GO:0019538: protein metabolic process	4.97E-03
52	GO:0006032: chitin catabolic process	4.97E-03
53	GO:0010114: response to red light	5.96E-03
54	GO:0006399: tRNA metabolic process	6.02E-03
55	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	7.15E-03
56	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	7.15E-03
57	GO:0009585: red, far-red light phototransduction	7.15E-03
58	GO:0006418: tRNA aminoacylation for protein translation	7.79E-03
59	GO:0009407: toxin catabolic process	8.34E-03
60	GO:0009834: plant-type secondary cell wall biogenesis	8.34E-03
61	GO:0006814: sodium ion transport	9.61E-03
62	GO:0045492: xylan biosynthetic process	1.09E-02
63	GO:0006546: glycine catabolic process	1.09E-02
64	GO:0016998: cell wall macromolecule catabolic process	1.23E-02
65	GO:0045036: protein targeting to chloroplast	1.23E-02
66	GO:0006655: phosphatidylglycerol biosynthetic process	1.38E-02
67	GO:0031408: oxylipin biosynthetic process	1.38E-02
68	GO:0005982: starch metabolic process	1.53E-02
69	GO:0045893: positive regulation of transcription, DNA-templated	1.71E-02
70	GO:0019684: photosynthesis, light reaction	1.85E-02
71	GO:0007623: circadian rhythm	1.85E-02
72	GO:0009409: response to cold	1.96E-02
73	GO:0008219: cell death	2.01E-02
74	GO:0009627: systemic acquired resistance	2.19E-02
75	GO:0010103: stomatal complex morphogenesis	2.19E-02
76	GO:0008643: carbohydrate transport	2.74E-02
77	GO:0006098: pentose-phosphate shunt	2.75E-02
78	GO:0035556: intracellular signal transduction	2.93E-02
79	GO:0015979: photosynthesis	3.05E-02
80	GO:0006626: protein targeting to mitochondrion	3.33E-02
81	GO:0000160: phosphorelay signal transduction system	3.54E-02
82	GO:0042742: defense response to bacterium	3.71E-02
83	GO:0009637: response to blue light	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
2	GO:0003862: 3-isopropylmalate dehydrogenase activity	0.00E+00
3	GO:0042586: peptide deformylase activity	0.00E+00
4	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
5	GO:0004853: uroporphyrinogen decarboxylase activity	5.82E-06
6	GO:0000774: adenyl-nucleotide exchange factor activity	2.11E-05
7	GO:0051087: chaperone binding	2.88E-04
8	GO:0016851: magnesium chelatase activity	3.97E-04
9	GO:0004823: leucine-tRNA ligase activity	3.97E-04
10	GO:0003876: AMP deaminase activity	3.97E-04
11	GO:0008508: bile acid:sodium symporter activity	3.97E-04
12	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.97E-04
13	GO:0004362: glutathione-disulfide reductase activity	3.97E-04
14	GO:0004824: lysine-tRNA ligase activity	3.97E-04
15	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	3.97E-04
16	GO:0004392: heme oxygenase (decyclizing) activity	9.31E-04
17	GO:0019239: deaminase activity	9.31E-04
18	GO:0051920: peroxiredoxin activity	9.31E-04
19	GO:0004462: lactoylglutathione lyase activity	9.31E-04
20	GO:0016831: carboxy-lyase activity	1.41E-03
21	GO:0015020: glucuronosyltransferase activity	1.57E-03
22	GO:0080116: glucuronoxylan glucuronosyltransferase activity	1.57E-03
23	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	2.28E-03
24	GO:0004550: nucleoside diphosphate kinase activity	2.28E-03
25	GO:0016209: antioxidant activity	2.28E-03
26	GO:0003913: DNA photolyase activity	2.28E-03
27	GO:0004568: chitinase activity	4.97E-03
28	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	4.97E-03
29	GO:0004525: ribonuclease III activity	4.97E-03
30	GO:0008312: 7S RNA binding	6.02E-03
31	GO:0004812: aminoacyl-tRNA ligase activity	8.82E-03
32	GO:0046914: transition metal ion binding	9.61E-03
33	GO:0016829: lyase activity	1.22E-02
34	GO:0042803: protein homodimerization activity	1.23E-02
35	GO:0008081: phosphoric diester hydrolase activity	1.53E-02
36	GO:0000156: phosphorelay response regulator activity	1.53E-02
37	GO:0051287: NAD binding	1.79E-02
38	GO:0004252: serine-type endopeptidase activity	2.11E-02
39	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.29E-02
40	GO:0008565: protein transporter activity	2.55E-02
41	GO:0031072: heat shock protein binding	2.55E-02
42	GO:0051082: unfolded protein binding	3.26E-02
43	GO:0008233: peptidase activity	3.71E-02
44	GO:0000287: magnesium ion binding	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	3.01E-11
2	GO:0009507: chloroplast	9.90E-11
3	GO:0009941: chloroplast envelope	2.14E-10
4	GO:0009579: thylakoid	7.46E-08
5	GO:0009840: chloroplastic endopeptidase Clp complex	8.78E-05
6	GO:0009532: plastid stroma	2.88E-04
7	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	3.97E-04
8	GO:0005960: glycine cleavage complex	3.97E-04
9	GO:0009535: chloroplast thylakoid membrane	5.32E-04
10	GO:0010319: stromule	6.84E-04
11	GO:0031977: thylakoid lumen	7.52E-04
12	GO:0005737: cytoplasm	1.34E-03
13	GO:0009706: chloroplast inner membrane	3.07E-03
14	GO:0005759: mitochondrial matrix	3.71E-03
15	GO:0019898: extrinsic component of membrane	3.99E-03
16	GO:0009654: photosystem II oxygen evolving complex	4.97E-03
17	GO:0048500: signal recognition particle	4.97E-03
18	GO:0048046: apoplast	6.85E-03
19	GO:0009534: chloroplast thylakoid	1.05E-02
20	GO:0009543: chloroplast thylakoid lumen	1.38E-02
21	GO:0005802: trans-Golgi network	3.13E-02
22	GO:0009523: photosystem II	3.75E-02