co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G111637

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
2	GO:0043953: protein transport by the Tat complex	0.00E+00
3	GO:0046506: sulfolipid biosynthetic process	0.00E+00
4	GO:1901259: chloroplast rRNA processing	0.00E+00
5	GO:0090342: regulation of cell aging	0.00E+00
6	GO:1900865: chloroplast RNA modification	0.00E+00
7	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
8	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
9	GO:0043043: peptide biosynthetic process	0.00E+00
10	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
11	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
12	GO:0042821: pyridoxal biosynthetic process	0.00E+00
13	GO:0010027: thylakoid membrane organization	4.88E-16
14	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.91E-15
15	GO:0045036: protein targeting to chloroplast	5.45E-11
16	GO:0006364: rRNA processing	1.28E-09
17	GO:0045038: protein import into chloroplast thylakoid membrane	7.01E-09
18	GO:0016226: iron-sulfur cluster assembly	7.08E-09
19	GO:0010207: photosystem II assembly	1.34E-08
20	GO:0015995: chlorophyll biosynthetic process	5.60E-08
21	GO:0006098: pentose-phosphate shunt	2.05E-07
22	GO:0009658: chloroplast organization	3.59E-07
23	GO:0006655: phosphatidylglycerol biosynthetic process	3.98E-07
24	GO:0009073: aromatic amino acid family biosynthetic process	1.40E-06
25	GO:0010103: stomatal complex morphogenesis	2.72E-06
26	GO:0006779: porphyrin-containing compound biosynthetic process	6.68E-06
27	GO:0009306: protein secretion	1.32E-05
28	GO:0009902: chloroplast relocation	1.37E-05
29	GO:0006636: unsaturated fatty acid biosynthetic process	2.02E-05
30	GO:0042372: phylloquinone biosynthetic process	2.62E-05
31	GO:0006399: tRNA metabolic process	4.19E-05
32	GO:0000023: maltose metabolic process	7.27E-05
33	GO:0006733: oxidoreduction coenzyme metabolic process	8.91E-05
34	GO:0019252: starch biosynthetic process	1.16E-04
35	GO:0016556: mRNA modification	1.33E-04
36	GO:0006546: glycine catabolic process	1.80E-04
37	GO:0009117: nucleotide metabolic process	1.92E-04
38	GO:0006782: protoporphyrinogen IX biosynthetic process	1.92E-04
39	GO:0043085: positive regulation of catalytic activity	2.31E-04
40	GO:0042793: transcription from plastid promoter	3.01E-04
41	GO:0019748: secondary metabolic process	3.35E-04
42	GO:0045893: positive regulation of transcription, DNA-templated	4.56E-04
43	GO:0019684: photosynthesis, light reaction	5.53E-04
44	GO:0009106: lipoate metabolic process	7.35E-04
45	GO:0006766: vitamin metabolic process	7.35E-04
46	GO:0009814: defense response, incompatible interaction	7.35E-04
47	GO:0009108: coenzyme biosynthetic process	7.35E-04
48	GO:0034660: ncRNA metabolic process	7.35E-04
49	GO:0009773: photosynthetic electron transport in photosystem I	9.06E-04
50	GO:0032543: mitochondrial translation	9.18E-04
51	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	9.18E-04
52	GO:0009443: pyridoxal 5'-phosphate salvage	9.18E-04
53	GO:0006429: leucyl-tRNA aminoacylation	9.18E-04
54	GO:0008361: regulation of cell size	9.18E-04
55	GO:0016050: vesicle organization	9.18E-04
56	GO:0009407: toxin catabolic process	1.64E-03
57	GO:0006184: obsolete GTP catabolic process	1.87E-03
58	GO:1901671: positive regulation of superoxide dismutase activity	2.08E-03
59	GO:0019464: glycine decarboxylation via glycine cleavage system	2.08E-03
60	GO:0010236: plastoquinone biosynthetic process	2.08E-03
61	GO:0032544: plastid translation	2.08E-03
62	GO:0009688: abscisic acid biosynthetic process	2.08E-03
63	GO:0048653: anther development	2.08E-03
64	GO:0009735: response to cytokinin	2.15E-03
65	GO:0019344: cysteine biosynthetic process	2.62E-03
66	GO:0016117: carotenoid biosynthetic process	2.62E-03
67	GO:0051607: defense response to virus	3.39E-03
68	GO:0016075: rRNA catabolic process	3.49E-03
69	GO:0043067: regulation of programmed cell death	3.49E-03
70	GO:0009247: glycolipid biosynthetic process	3.49E-03
71	GO:0019760: glucosinolate metabolic process	3.49E-03
72	GO:0007186: G-protein coupled receptor signaling pathway	3.49E-03
73	GO:0010731: protein glutathionylation	3.49E-03
74	GO:0008299: isoprenoid biosynthetic process	3.96E-03
75	GO:0009409: response to cold	5.07E-03
76	GO:0006228: UTP biosynthetic process	5.15E-03
77	GO:0010304: PSII associated light-harvesting complex II catabolic process	5.15E-03
78	GO:0051205: protein insertion into membrane	5.15E-03
79	GO:0045037: protein import into chloroplast stroma	5.15E-03
80	GO:0019375: galactolipid biosynthetic process	5.15E-03
81	GO:0006183: GTP biosynthetic process	5.15E-03
82	GO:0006241: CTP biosynthetic process	5.15E-03
83	GO:0007389: pattern specification process	5.15E-03
84	GO:0071704: organic substance metabolic process	5.15E-03
85	GO:0006165: nucleoside diphosphate phosphorylation	5.15E-03
86	GO:0030154: cell differentiation	5.22E-03
87	GO:0006414: translational elongation	5.29E-03
88	GO:0010267: production of ta-siRNAs involved in RNA interference	5.92E-03
89	GO:0035196: production of miRNAs involved in gene silencing by miRNA	5.92E-03
90	GO:0015979: photosynthesis	6.20E-03
91	GO:0009813: flavonoid biosynthetic process	7.04E-03
92	GO:0006569: tryptophan catabolic process	7.04E-03
93	GO:0009772: photosynthetic electron transport in photosystem II	7.04E-03
94	GO:0035304: regulation of protein dephosphorylation	7.47E-03
95	GO:0009695: jasmonic acid biosynthetic process	8.32E-03
96	GO:0006749: glutathione metabolic process	9.13E-03
97	GO:0048229: gametophyte development	9.13E-03
98	GO:0009411: response to UV	1.14E-02
99	GO:0010583: response to cyclopentenone	1.14E-02
100	GO:0009926: auxin polar transport	1.14E-02
101	GO:0051604: protein maturation	1.38E-02
102	GO:0030245: cellulose catabolic process	1.38E-02
103	GO:0009585: red, far-red light phototransduction	1.65E-02
104	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.65E-02
105	GO:0040007: growth	1.65E-02
106	GO:0010015: root morphogenesis	1.65E-02
107	GO:0019761: glucosinolate biosynthetic process	1.83E-02
108	GO:0009832: plant-type cell wall biogenesis	1.93E-02
109	GO:0009684: indoleacetic acid biosynthetic process	1.93E-02
110	GO:0009697: salicylic acid biosynthetic process	2.22E-02
111	GO:0009567: double fertilization forming a zygote and endosperm	2.22E-02
112	GO:0006354: DNA-templated transcription, elongation	2.22E-02
113	GO:0048481: plant ovule development	2.41E-02
114	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.53E-02
115	GO:0006418: tRNA aminoacylation for protein translation	2.57E-02
116	GO:0009793: embryo development ending in seed dormancy	2.88E-02
117	GO:0015996: chlorophyll catabolic process	3.55E-02
118	GO:0010075: regulation of meristem growth	3.55E-02
119	GO:0042545: cell wall modification	3.92E-02
120	GO:0006200: obsolete ATP catabolic process	4.03E-02
121	GO:0009965: leaf morphogenesis	4.24E-02
122	GO:0009657: plastid organization	4.30E-02
123	GO:0006631: fatty acid metabolic process	4.30E-02
124	GO:0009664: plant-type cell wall organization	4.69E-02
125	GO:0006417: regulation of translation	4.69E-02
126	GO:0016036: cellular response to phosphate starvation	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
3	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
4	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
5	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
6	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
7	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
8	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
9	GO:0005048: signal sequence binding	0.00E+00
10	GO:0005504: fatty acid binding	0.00E+00
11	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
12	GO:0004853: uroporphyrinogen decarboxylase activity	2.62E-05
13	GO:0004765: shikimate kinase activity	1.92E-04
14	GO:0008146: sulfotransferase activity	9.18E-04
15	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	9.18E-04
16	GO:0004823: leucine-tRNA ligase activity	9.18E-04
17	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.18E-04
18	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	9.18E-04
19	GO:0004362: glutathione-disulfide reductase activity	9.18E-04
20	GO:0070402: NADPH binding	9.18E-04
21	GO:0008565: protein transporter activity	1.05E-03
22	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.64E-03
23	GO:0004462: lactoylglutathione lyase activity	2.08E-03
24	GO:0045430: chalcone isomerase activity	2.08E-03
25	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.08E-03
26	GO:0016872: intramolecular lyase activity	3.49E-03
27	GO:0003746: translation elongation factor activity	3.49E-03
28	GO:0016831: carboxy-lyase activity	4.58E-03
29	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	5.15E-03
30	GO:0004550: nucleoside diphosphate kinase activity	5.15E-03
31	GO:0003913: DNA photolyase activity	5.15E-03
32	GO:0070569: uridylyltransferase activity	5.15E-03
33	GO:0004659: prenyltransferase activity	5.15E-03
34	GO:0016868: intramolecular transferase activity, phosphotransferases	7.04E-03
35	GO:0016987: sigma factor activity	7.04E-03
36	GO:0008173: RNA methyltransferase activity	9.13E-03
37	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.14E-02
38	GO:0004525: ribonuclease III activity	1.14E-02
39	GO:0008810: cellulase activity	1.14E-02
40	GO:0008312: 7S RNA binding	1.38E-02
41	GO:0043022: ribosome binding	1.38E-02
42	GO:0003924: GTPase activity	1.44E-02
43	GO:0008236: serine-type peptidase activity	1.70E-02
44	GO:0005525: GTP binding	1.91E-02
45	GO:0046914: transition metal ion binding	2.22E-02
46	GO:0051082: unfolded protein binding	2.81E-02
47	GO:0004812: aminoacyl-tRNA ligase activity	2.90E-02
48	GO:0003723: RNA binding	3.25E-02
49	GO:0005216: ion channel activity	3.92E-02
50	GO:0000287: magnesium ion binding	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0055035: plastid thylakoid membrane	0.00E+00
2	GO:0031361: integral component of thylakoid membrane	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	7.87E-28
5	GO:0009570: chloroplast stroma	6.42E-22
6	GO:0009535: chloroplast thylakoid membrane	6.05E-12
7	GO:0009941: chloroplast envelope	2.57E-11
8	GO:0009579: thylakoid	3.06E-08
9	GO:0009534: chloroplast thylakoid	1.03E-06
10	GO:0009532: plastid stroma	4.19E-05
11	GO:0031977: thylakoid lumen	5.31E-05
12	GO:0009295: nucleoid	1.80E-04
13	GO:0009543: chloroplast thylakoid lumen	3.01E-04
14	GO:0009840: chloroplastic endopeptidase Clp complex	3.35E-04
15	GO:0080085: signal recognition particle, chloroplast targeting	9.18E-04
16	GO:0009528: plastid inner membrane	9.18E-04
17	GO:0009527: plastid outer membrane	9.18E-04
18	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	9.18E-04
19	GO:0009526: plastid envelope	9.18E-04
20	GO:0005960: glycine cleavage complex	9.18E-04
21	GO:0044445: cytosolic part	9.18E-04
22	GO:0009508: plastid chromosome	7.04E-03
23	GO:0019013: viral nucleocapsid	7.47E-03
24	GO:0019898: extrinsic component of membrane	9.13E-03
25	GO:0009706: chloroplast inner membrane	1.02E-02
26	GO:0009654: photosystem II oxygen evolving complex	1.14E-02
27	GO:0048500: signal recognition particle	1.14E-02
28	GO:0009523: photosystem II	1.45E-02
29	GO:0005840: ribosome	1.96E-02
30	GO:0010319: stromule	1.97E-02
31	GO:0009536: plastid	2.47E-02