| Rank | GO Term | Adjusted P value |
|---|
| 1 | GO:1900865: chloroplast RNA modification | 0.00E+00 |
| 2 | GO:0043953: protein transport by the Tat complex | 0.00E+00 |
| 3 | GO:0009306: protein secretion | 1.89E-05 |
| 4 | GO:0010027: thylakoid membrane organization | 2.32E-05 |
| 5 | GO:0000023: maltose metabolic process | 8.15E-05 |
| 6 | GO:0006364: rRNA processing | 1.17E-04 |
| 7 | GO:0051607: defense response to virus | 1.78E-04 |
| 8 | GO:0010267: production of ta-siRNAs involved in RNA interference | 3.26E-04 |
| 9 | GO:0035196: production of miRNAs involved in gene silencing by miRNA | 3.26E-04 |
| 10 | GO:0019252: starch biosynthetic process | 4.13E-04 |
| 11 | GO:0010731: protein glutathionylation | 4.96E-04 |
| 12 | GO:0043067: regulation of programmed cell death | 4.96E-04 |
| 13 | GO:0009231: riboflavin biosynthetic process | 4.96E-04 |
| 14 | GO:0009902: chloroplast relocation | 6.95E-04 |
| 15 | GO:0045038: protein import into chloroplast thylakoid membrane | 7.35E-04 |
| 16 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 7.35E-04 |
| 17 | GO:0009814: defense response, incompatible interaction | 1.61E-03 |
| 18 | GO:0010583: response to cyclopentenone | 1.61E-03 |
| 19 | GO:0034660: ncRNA metabolic process | 1.61E-03 |
| 20 | GO:0051604: protein maturation | 1.93E-03 |
| 21 | GO:0006399: tRNA metabolic process | 1.93E-03 |
| 22 | GO:0043085: positive regulation of catalytic activity | 2.29E-03 |
| 23 | GO:0009407: toxin catabolic process | 2.62E-03 |
| 24 | GO:0045893: positive regulation of transcription, DNA-templated | 3.18E-03 |
| 25 | GO:0045036: protein targeting to chloroplast | 3.86E-03 |
| 26 | GO:0006655: phosphatidylglycerol biosynthetic process | 4.31E-03 |
| 27 | GO:0042793: transcription from plastid promoter | 4.31E-03 |
| 28 | GO:0015996: chlorophyll catabolic process | 4.77E-03 |
| 29 | GO:0008299: isoprenoid biosynthetic process | 4.77E-03 |
| 30 | GO:0010363: regulation of plant-type hypersensitive response | 7.33E-03 |
| 31 | GO:0035304: regulation of protein dephosphorylation | 7.33E-03 |
| 32 | GO:0006869: lipid transport | 7.88E-03 |
| 33 | GO:0009735: response to cytokinin | 1.15E-02 |
| 34 | GO:0009073: aromatic amino acid family biosynthetic process | 1.22E-02 |
| 35 | GO:0016117: carotenoid biosynthetic process | 1.29E-02 |
| 36 | GO:0019761: glucosinolate biosynthetic process | 1.35E-02 |
| 37 | GO:0016226: iron-sulfur cluster assembly | 1.50E-02 |
| 38 | GO:0009658: chloroplast organization | 1.72E-02 |
| 39 | GO:0006812: cation transport | 2.11E-02 |
| 40 | GO:0015995: chlorophyll biosynthetic process | 2.11E-02 |
| 41 | GO:0006200: obsolete ATP catabolic process | 2.36E-02 |
| 42 | GO:0010207: photosystem II assembly | 2.71E-02 |
| 43 | GO:0015031: protein transport | 2.92E-02 |
| 44 | GO:0006396: RNA processing | 3.08E-02 |
| 45 | GO:0006413: translational initiation | 3.66E-02 |
| 46 | GO:0006098: pentose-phosphate shunt | 4.17E-02 |
| 47 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 4.17E-02 |
| 48 | GO:0015979: photosynthesis | 4.49E-02 |