co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G111475

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
2	GO:0042780: tRNA 3'-end processing	0.00E+00
3	GO:1900865: chloroplast RNA modification	0.00E+00
4	GO:0043686: co-translational protein modification	0.00E+00
5	GO:0048564: photosystem I assembly	0.00E+00
6	GO:0043953: protein transport by the Tat complex	0.00E+00
7	GO:0046506: sulfolipid biosynthetic process	0.00E+00
8	GO:0009658: chloroplast organization	5.11E-08
9	GO:0009306: protein secretion	8.39E-07
10	GO:0006364: rRNA processing	8.96E-07
11	GO:0006399: tRNA metabolic process	2.86E-06
12	GO:0010027: thylakoid membrane organization	2.15E-05
13	GO:0010207: photosystem II assembly	1.42E-04
14	GO:0045087: innate immune response	2.45E-04
15	GO:0006591: ornithine metabolic process	2.98E-04
16	GO:0009959: negative gravitropism	2.98E-04
17	GO:0016556: mRNA modification	3.95E-04
18	GO:0045036: protein targeting to chloroplast	5.81E-04
19	GO:0042793: transcription from plastid promoter	6.88E-04
20	GO:0009642: response to light intensity	7.00E-04
21	GO:1901671: positive regulation of superoxide dismutase activity	7.00E-04
22	GO:0030308: negative regulation of cell growth	7.00E-04
23	GO:0008299: isoprenoid biosynthetic process	8.06E-04
24	GO:0019760: glucosinolate metabolic process	1.20E-03
25	GO:0051085: chaperone mediated protein folding requiring cofactor	1.20E-03
26	GO:0010731: protein glutathionylation	1.20E-03
27	GO:0016075: rRNA catabolic process	1.20E-03
28	GO:0009247: glycolipid biosynthetic process	1.20E-03
29	GO:0045893: positive regulation of transcription, DNA-templated	1.62E-03
30	GO:0045038: protein import into chloroplast thylakoid membrane	1.75E-03
31	GO:0000373: Group II intron splicing	1.75E-03
32	GO:0042026: protein refolding	1.75E-03
33	GO:0071704: organic substance metabolic process	1.75E-03
34	GO:0006782: protoporphyrinogen IX biosynthetic process	1.75E-03
35	GO:0006598: polyamine catabolic process	1.75E-03
36	GO:0019375: galactolipid biosynthetic process	1.75E-03
37	GO:0010468: regulation of gene expression	2.34E-03
38	GO:0009735: response to cytokinin	2.91E-03
39	GO:0048229: gametophyte development	3.00E-03
40	GO:0000105: histidine biosynthetic process	3.00E-03
41	GO:0010583: response to cyclopentenone	3.75E-03
42	GO:0051604: protein maturation	4.56E-03
43	GO:0006221: pyrimidine nucleotide biosynthetic process	5.38E-03
44	GO:0009723: response to ethylene	5.50E-03
45	GO:0009407: toxin catabolic process	6.28E-03
46	GO:0008380: RNA splicing	7.24E-03
47	GO:0006779: porphyrin-containing compound biosynthetic process	8.22E-03
48	GO:0051607: defense response to virus	1.03E-02
49	GO:0009409: response to cold	1.06E-02
50	GO:0006396: RNA processing	1.19E-02
51	GO:0009630: gravitropism	1.26E-02
52	GO:0019684: photosynthesis, light reaction	1.38E-02
53	GO:0009657: plastid organization	1.38E-02
54	GO:0009416: response to light stimulus	1.40E-02
55	GO:0010267: production of ta-siRNAs involved in RNA interference	1.51E-02
56	GO:0016036: cellular response to phosphate starvation	1.51E-02
57	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.51E-02
58	GO:0008219: cell death	1.51E-02
59	GO:0044267: cellular protein metabolic process	1.51E-02
60	GO:0010155: regulation of proton transport	1.51E-02
61	GO:0009627: systemic acquired resistance	1.64E-02
62	GO:0010103: stomatal complex morphogenesis	1.64E-02
63	GO:0035304: regulation of protein dephosphorylation	1.77E-02
64	GO:0046777: protein autophosphorylation	1.77E-02
65	GO:0006098: pentose-phosphate shunt	1.83E-02
66	GO:0006457: protein folding	1.95E-02
67	GO:0006184: obsolete GTP catabolic process	2.39E-02
68	GO:0009902: chloroplast relocation	2.50E-02
69	GO:0006520: cellular amino acid metabolic process	2.50E-02
70	GO:0009560: embryo sac egg cell differentiation	2.65E-02
71	GO:0015031: protein transport	2.69E-02
72	GO:0009073: aromatic amino acid family biosynthetic process	2.97E-02
73	GO:0006662: glycerol ether metabolic process	2.97E-02
74	GO:0009637: response to blue light	3.14E-02
75	GO:0009790: embryo development	3.31E-02
76	GO:0019761: glucosinolate biosynthetic process	3.31E-02
77	GO:0010114: response to red light	3.48E-02
78	GO:0016226: iron-sulfur cluster assembly	3.65E-02
79	GO:0010218: response to far red light	3.83E-02

Rank	GO Term	Adjusted P value
1	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
2	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
3	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
4	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
5	GO:0042586: peptide deformylase activity	0.00E+00
6	GO:0016817: hydrolase activity, acting on acid anhydrides	8.81E-05
7	GO:0008565: protein transporter activity	1.10E-04
8	GO:0004525: ribonuclease III activity	1.31E-04
9	GO:0008266: poly(U) RNA binding	2.45E-04
10	GO:0004585: ornithine carbamoyltransferase activity	2.98E-04
11	GO:0008146: sulfotransferase activity	2.98E-04
12	GO:0033862: UMP kinase activity	2.98E-04
13	GO:0045174: glutathione dehydrogenase (ascorbate) activity	2.98E-04
14	GO:0005496: steroid binding	7.00E-04
15	GO:0016630: protochlorophyllide reductase activity	7.00E-04
16	GO:0047134: protein-disulfide reductase activity	7.00E-04
17	GO:0004853: uroporphyrinogen decarboxylase activity	7.00E-04
18	GO:0046592: polyamine oxidase activity	7.00E-04
19	GO:0000287: magnesium ion binding	1.06E-03
20	GO:0003959: NADPH dehydrogenase activity	1.20E-03
21	GO:0009041: uridylate kinase activity	1.20E-03
22	GO:0016743: carboxyl- or carbamoyltransferase activity	1.20E-03
23	GO:0016868: intramolecular transferase activity, phosphotransferases	2.34E-03
24	GO:0046914: transition metal ion binding	7.24E-03
25	GO:0016831: carboxy-lyase activity	1.26E-02
26	GO:0005525: GTP binding	1.27E-02
27	GO:0004222: metalloendopeptidase activity	2.20E-02
28	GO:0016597: amino acid binding	2.34E-02
29	GO:0008236: serine-type peptidase activity	3.14E-02
30	GO:0003723: RNA binding	3.88E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	4.93E-10
4	GO:0009535: chloroplast thylakoid membrane	2.07E-09
5	GO:0009941: chloroplast envelope	5.90E-06
6	GO:0009570: chloroplast stroma	7.25E-06
7	GO:0009579: thylakoid	2.15E-05
8	GO:0009526: plastid envelope	2.98E-04
9	GO:0044445: cytosolic part	2.98E-04
10	GO:0010319: stromule	3.92E-04
11	GO:0019898: extrinsic component of membrane	3.00E-03
12	GO:0009654: photosystem II oxygen evolving complex	3.75E-03
13	GO:0031977: thylakoid lumen	4.25E-03
14	GO:0009532: plastid stroma	4.56E-03
15	GO:0009295: nucleoid	8.22E-03
16	GO:0009543: chloroplast thylakoid lumen	1.03E-02
17	GO:0019013: viral nucleocapsid	1.77E-02
18	GO:0009706: chloroplast inner membrane	2.20E-02
19	GO:0005759: mitochondrial matrix	2.50E-02
20	GO:0009523: photosystem II	2.81E-02