co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G106928

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901259: chloroplast rRNA processing	0.00E+00
2	GO:0035436: triose phosphate transmembrane transport	0.00E+00
3	GO:0015714: phosphoenolpyruvate transport	0.00E+00
4	GO:0032544: plastid translation	0.00E+00
5	GO:0042372: phylloquinone biosynthetic process	0.00E+00
6	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
7	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
8	GO:0043043: peptide biosynthetic process	0.00E+00
9	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
10	GO:0042821: pyridoxal biosynthetic process	0.00E+00
11	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
12	GO:0009234: menaquinone biosynthetic process	0.00E+00
13	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
14	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.12E-20
15	GO:0010027: thylakoid membrane organization	2.49E-15
16	GO:0006412: translation	1.51E-13
17	GO:0010207: photosystem II assembly	9.21E-11
18	GO:0015995: chlorophyll biosynthetic process	3.03E-10
19	GO:0045036: protein targeting to chloroplast	8.50E-09
20	GO:0006098: pentose-phosphate shunt	4.04E-08
21	GO:0009902: chloroplast relocation	4.88E-08
22	GO:0006364: rRNA processing	5.38E-08
23	GO:0016226: iron-sulfur cluster assembly	3.74E-07
24	GO:0006733: oxidoreduction coenzyme metabolic process	6.76E-07
25	GO:0042793: transcription from plastid promoter	7.12E-07
26	GO:0009658: chloroplast organization	7.66E-07
27	GO:0009117: nucleotide metabolic process	3.16E-06
28	GO:0019748: secondary metabolic process	8.80E-06
29	GO:0006546: glycine catabolic process	1.06E-05
30	GO:0006655: phosphatidylglycerol biosynthetic process	2.28E-05
31	GO:0006636: unsaturated fatty acid biosynthetic process	3.17E-05
32	GO:0010236: plastoquinone biosynthetic process	3.44E-05
33	GO:0006766: vitamin metabolic process	3.55E-05
34	GO:0009108: coenzyme biosynthetic process	3.55E-05
35	GO:0009106: lipoate metabolic process	3.55E-05
36	GO:0016117: carotenoid biosynthetic process	5.28E-05
37	GO:0019684: photosynthesis, light reaction	5.68E-05
38	GO:0035304: regulation of protein dephosphorylation	1.16E-04
39	GO:0009773: photosynthetic electron transport in photosystem I	1.16E-04
40	GO:0006418: tRNA aminoacylation for protein translation	1.37E-04
41	GO:0006354: DNA-templated transcription, elongation	1.86E-04
42	GO:0006779: porphyrin-containing compound biosynthetic process	2.50E-04
43	GO:0000096: sulfur amino acid metabolic process	4.23E-04
44	GO:0019344: cysteine biosynthetic process	5.16E-04
45	GO:0045893: positive regulation of transcription, DNA-templated	7.00E-04
46	GO:0030154: cell differentiation	7.47E-04
47	GO:0010103: stomatal complex morphogenesis	1.05E-03
48	GO:0006573: valine metabolic process	1.07E-03
49	GO:0006433: prolyl-tRNA aminoacylation	1.07E-03
50	GO:0032543: mitochondrial translation	1.07E-03
51	GO:0006282: regulation of DNA repair	1.07E-03
52	GO:0009069: serine family amino acid metabolic process	1.07E-03
53	GO:0019253: reductive pentose-phosphate cycle	1.07E-03
54	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.07E-03
55	GO:0019676: ammonia assimilation cycle	1.07E-03
56	GO:0006430: lysyl-tRNA aminoacylation	1.07E-03
57	GO:0009443: pyridoxal 5'-phosphate salvage	1.07E-03
58	GO:0008361: regulation of cell size	1.07E-03
59	GO:0006434: seryl-tRNA aminoacylation	1.07E-03
60	GO:0018160: peptidyl-pyrromethane cofactor linkage	1.07E-03
61	GO:0006399: tRNA metabolic process	1.25E-03
62	GO:0009695: jasmonic acid biosynthetic process	1.40E-03
63	GO:0015979: photosynthesis	2.06E-03
64	GO:0043085: positive regulation of catalytic activity	2.11E-03
65	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.40E-03
66	GO:0006432: phenylalanyl-tRNA aminoacylation	2.40E-03
67	GO:0010109: regulation of photosynthesis	2.40E-03
68	GO:0048653: anther development	2.40E-03
69	GO:0044272: sulfur compound biosynthetic process	2.40E-03
70	GO:0019464: glycine decarboxylation via glycine cleavage system	2.40E-03
71	GO:0016556: mRNA modification	2.49E-03
72	GO:0009735: response to cytokinin	2.84E-03
73	GO:0042742: defense response to bacterium	2.92E-03
74	GO:0009073: aromatic amino acid family biosynthetic process	3.16E-03
75	GO:0007186: G-protein coupled receptor signaling pathway	4.07E-03
76	GO:0010114: response to red light	4.26E-03
77	GO:0015996: chlorophyll catabolic process	4.95E-03
78	GO:0048481: plant ovule development	5.53E-03
79	GO:0042545: cell wall modification	5.70E-03
80	GO:0010304: PSII associated light-harvesting complex II catabolic process	6.02E-03
81	GO:0045037: protein import into chloroplast stroma	6.02E-03
82	GO:0045038: protein import into chloroplast thylakoid membrane	6.02E-03
83	GO:0007389: pattern specification process	6.02E-03
84	GO:0019216: regulation of lipid metabolic process	6.02E-03
85	GO:0006414: translational elongation	7.05E-03
86	GO:0010155: regulation of proton transport	7.40E-03
87	GO:0007568: aging	8.22E-03
88	GO:0010189: vitamin E biosynthetic process	8.22E-03
89	GO:0006569: tryptophan catabolic process	8.22E-03
90	GO:0009088: threonine biosynthetic process	8.22E-03
91	GO:0009772: photosynthetic electron transport in photosystem II	8.22E-03
92	GO:0009409: response to cold	8.28E-03
93	GO:0008652: cellular amino acid biosynthetic process	8.80E-03
94	GO:0046777: protein autophosphorylation	9.35E-03
95	GO:0010228: vegetative to reproductive phase transition of meristem	9.43E-03
96	GO:0000105: histidine biosynthetic process	1.07E-02
97	GO:0007005: mitochondrion organization	1.07E-02
98	GO:0006542: glutamine biosynthetic process	1.07E-02
99	GO:0009965: leaf morphogenesis	1.15E-02
100	GO:0009793: embryo development ending in seed dormancy	1.26E-02
101	GO:0009411: response to UV	1.33E-02
102	GO:0009814: defense response, incompatible interaction	1.33E-02
103	GO:0033014: tetrapyrrole biosynthetic process	1.33E-02
104	GO:0010206: photosystem II repair	1.33E-02
105	GO:0034660: ncRNA metabolic process	1.33E-02
106	GO:0009926: auxin polar transport	1.33E-02
107	GO:0010205: photoinhibition	1.33E-02
108	GO:0008295: spermidine biosynthetic process	1.62E-02
109	GO:0043039: tRNA aminoacylation	1.62E-02
110	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.93E-02
111	GO:0040007: growth	1.93E-02
112	GO:0010015: root morphogenesis	1.93E-02
113	GO:0015977: carbon fixation	1.93E-02
114	GO:0048868: pollen tube development	1.93E-02
115	GO:0009072: aromatic amino acid family metabolic process	1.93E-02
116	GO:0006662: glycerol ether metabolic process	1.97E-02
117	GO:0009637: response to blue light	2.12E-02
118	GO:0009832: plant-type cell wall biogenesis	2.26E-02
119	GO:0009684: indoleacetic acid biosynthetic process	2.26E-02
120	GO:0019761: glucosinolate biosynthetic process	2.29E-02
121	GO:0009697: salicylic acid biosynthetic process	2.60E-02
122	GO:0010218: response to far red light	2.82E-02
123	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.97E-02
124	GO:0000023: maltose metabolic process	3.01E-02
125	GO:0048316: seed development	3.74E-02
126	GO:0008033: tRNA processing	3.74E-02
127	GO:0009767: photosynthetic electron transport chain	3.74E-02
128	GO:0031408: oxylipin biosynthetic process	3.74E-02
129	GO:0051607: defense response to virus	3.74E-02
130	GO:0010075: regulation of meristem growth	4.16E-02
131	GO:0007030: Golgi organization	4.16E-02
132	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.16E-02
133	GO:0006184: obsolete GTP catabolic process	4.18E-02
134	GO:0006833: water transport	4.59E-02
135	GO:0006972: hyperosmotic response	4.59E-02
136	GO:0009750: response to fructose	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0004399: histidinol dehydrogenase activity	0.00E+00
2	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
3	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
4	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
5	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
6	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
7	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
8	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
9	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
10	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
11	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
12	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
13	GO:0004802: transketolase activity	0.00E+00
14	GO:0003735: structural constituent of ribosome	6.18E-12
15	GO:0004812: aminoacyl-tRNA ligase activity	1.80E-04
16	GO:0004765: shikimate kinase activity	2.46E-04
17	GO:0016209: antioxidant activity	2.46E-04
18	GO:0019843: rRNA binding	2.48E-04
19	GO:0004824: lysine-tRNA ligase activity	1.07E-03
20	GO:0034256: chlorophyll(ide) b reductase activity	1.07E-03
21	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.07E-03
22	GO:0004827: proline-tRNA ligase activity	1.07E-03
23	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.07E-03
24	GO:0004418: hydroxymethylbilane synthase activity	1.07E-03
25	GO:0016851: magnesium chelatase activity	1.07E-03
26	GO:0004828: serine-tRNA ligase activity	1.07E-03
27	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.07E-03
28	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.07E-03
29	GO:0070402: NADPH binding	1.07E-03
30	GO:0004795: threonine synthase activity	1.07E-03
31	GO:0000049: tRNA binding	2.03E-03
32	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.40E-03
33	GO:0045485: omega-6 fatty acid desaturase activity	2.40E-03
34	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	2.40E-03
35	GO:0051920: peroxiredoxin activity	2.40E-03
36	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.40E-03
37	GO:0004826: phenylalanine-tRNA ligase activity	2.40E-03
38	GO:0003746: translation elongation factor activity	4.66E-03
39	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.02E-03
40	GO:0016984: ribulose-bisphosphate carboxylase activity	6.02E-03
41	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	6.02E-03
42	GO:0070569: uridylyltransferase activity	6.02E-03
43	GO:0004659: prenyltransferase activity	6.02E-03
44	GO:0016987: sigma factor activity	8.22E-03
45	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	8.22E-03
46	GO:0004356: glutamate-ammonia ligase activity	1.07E-02
47	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.33E-02
48	GO:0008312: 7S RNA binding	1.62E-02
49	GO:0043022: ribosome binding	1.62E-02
50	GO:0042578: phosphoric ester hydrolase activity	1.93E-02
51	GO:0003723: RNA binding	2.20E-02
52	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.26E-02
53	GO:0003993: acid phosphatase activity	3.35E-02
54	GO:0000156: phosphorelay response regulator activity	4.16E-02
55	GO:0016760: cellulose synthase (UDP-forming) activity	4.16E-02
56	GO:0008081: phosphoric diester hydrolase activity	4.16E-02
57	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.53E-02
58	GO:0019901: protein kinase binding	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.71E-45
2	GO:0009570: chloroplast stroma	1.03E-37
3	GO:0009941: chloroplast envelope	1.52E-29
4	GO:0005840: ribosome	3.57E-16
5	GO:0009579: thylakoid	1.30E-09
6	GO:0009535: chloroplast thylakoid membrane	2.97E-09
7	GO:0030529: intracellular ribonucleoprotein complex	9.24E-08
8	GO:0009534: chloroplast thylakoid	2.84E-05
9	GO:0005622: intracellular	4.18E-05
10	GO:0009295: nucleoid	2.50E-04
11	GO:0009543: chloroplast thylakoid lumen	4.10E-04
12	GO:0009840: chloroplastic endopeptidase Clp complex	4.23E-04
13	GO:0009528: plastid inner membrane	1.07E-03
14	GO:0000311: plastid large ribosomal subunit	1.07E-03
15	GO:0009527: plastid outer membrane	1.07E-03
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.07E-03
17	GO:0005960: glycine cleavage complex	1.07E-03
18	GO:0009532: plastid stroma	1.25E-03
19	GO:0009536: plastid	4.12E-03
20	GO:0015934: large ribosomal subunit	4.26E-03
21	GO:0015935: small ribosomal subunit	4.66E-03
22	GO:0031977: thylakoid lumen	4.66E-03
23	GO:0019013: viral nucleocapsid	9.35E-03
24	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.07E-02
25	GO:0048500: signal recognition particle	1.33E-02
26	GO:0010319: stromule	2.46E-02
27	GO:0048046: apoplast	2.98E-02
28	GO:0042651: thylakoid membrane	3.74E-02