co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G106164

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043043: peptide biosynthetic process	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
5	GO:0043953: protein transport by the Tat complex	0.00E+00
6	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
7	GO:1901259: chloroplast rRNA processing	0.00E+00
8	GO:0010028: xanthophyll cycle	0.00E+00
9	GO:0090342: regulation of cell aging	0.00E+00
10	GO:0032544: plastid translation	0.00E+00
11	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
12	GO:0051188: cofactor biosynthetic process	0.00E+00
13	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
14	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9.90E-27
15	GO:0010027: thylakoid membrane organization	8.95E-22
16	GO:0010207: photosystem II assembly	9.54E-13
17	GO:0006098: pentose-phosphate shunt	3.20E-12
18	GO:0006364: rRNA processing	1.11E-11
19	GO:0015995: chlorophyll biosynthetic process	5.72E-11
20	GO:0016226: iron-sulfur cluster assembly	9.16E-11
21	GO:0009902: chloroplast relocation	1.60E-10
22	GO:0045036: protein targeting to chloroplast	3.53E-10
23	GO:0006655: phosphatidylglycerol biosynthetic process	7.37E-10
24	GO:0045038: protein import into chloroplast thylakoid membrane	2.24E-08
25	GO:0042793: transcription from plastid promoter	3.90E-08
26	GO:0006636: unsaturated fatty acid biosynthetic process	6.74E-08
27	GO:0006412: translation	1.33E-07
28	GO:0009106: lipoate metabolic process	1.09E-06
29	GO:0006766: vitamin metabolic process	1.09E-06
30	GO:0009108: coenzyme biosynthetic process	1.09E-06
31	GO:0009658: chloroplast organization	2.09E-06
32	GO:0006418: tRNA aminoacylation for protein translation	2.09E-06
33	GO:0016117: carotenoid biosynthetic process	8.14E-06
34	GO:0043085: positive regulation of catalytic activity	9.92E-06
35	GO:0000096: sulfur amino acid metabolic process	1.45E-05
36	GO:0006569: tryptophan catabolic process	1.45E-05
37	GO:0019748: secondary metabolic process	1.45E-05
38	GO:0006546: glycine catabolic process	1.96E-05
39	GO:0000023: maltose metabolic process	2.30E-05
40	GO:0015979: photosynthesis	2.40E-05
41	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.97E-05
42	GO:0042372: phylloquinone biosynthetic process	4.97E-05
43	GO:0034660: ncRNA metabolic process	5.74E-05
44	GO:0009073: aromatic amino acid family biosynthetic process	8.56E-05
45	GO:0030154: cell differentiation	9.99E-05
46	GO:0019761: glucosinolate biosynthetic process	1.22E-04
47	GO:0010103: stomatal complex morphogenesis	1.61E-04
48	GO:0006733: oxidoreduction coenzyme metabolic process	1.62E-04
49	GO:0009773: photosynthetic electron transport in photosystem I	2.00E-04
50	GO:0009684: indoleacetic acid biosynthetic process	2.08E-04
51	GO:0045893: positive regulation of transcription, DNA-templated	2.22E-04
52	GO:0048481: plant ovule development	2.25E-04
53	GO:0009695: jasmonic acid biosynthetic process	2.44E-04
54	GO:0006354: DNA-templated transcription, elongation	2.86E-04
55	GO:0016556: mRNA modification	2.86E-04
56	GO:0009117: nucleotide metabolic process	3.40E-04
57	GO:0019252: starch biosynthetic process	4.00E-04
58	GO:0010228: vegetative to reproductive phase transition of meristem	5.25E-04
59	GO:0009813: flavonoid biosynthetic process	5.78E-04
60	GO:0009767: photosynthetic electron transport chain	6.15E-04
61	GO:0030003: cellular cation homeostasis	1.25E-03
62	GO:0008361: regulation of cell size	1.31E-03
63	GO:0006434: seryl-tRNA aminoacylation	1.31E-03
64	GO:0016050: vesicle organization	1.31E-03
65	GO:0006427: histidyl-tRNA aminoacylation	1.31E-03
66	GO:0006573: valine metabolic process	1.31E-03
67	GO:0006433: prolyl-tRNA aminoacylation	1.31E-03
68	GO:0032543: mitochondrial translation	1.31E-03
69	GO:0006423: cysteinyl-tRNA aminoacylation	1.31E-03
70	GO:0009768: photosynthesis, light harvesting in photosystem I	1.31E-03
71	GO:0009069: serine family amino acid metabolic process	1.31E-03
72	GO:0071722: detoxification of arsenic-containing substance	1.31E-03
73	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	1.31E-03
74	GO:0009443: pyridoxal 5'-phosphate salvage	1.31E-03
75	GO:0006399: tRNA metabolic process	1.68E-03
76	GO:0035304: regulation of protein dephosphorylation	1.78E-03
77	GO:0009072: aromatic amino acid family metabolic process	2.16E-03
78	GO:0048653: anther development	2.94E-03
79	GO:0044272: sulfur compound biosynthetic process	2.94E-03
80	GO:0006432: phenylalanyl-tRNA aminoacylation	2.94E-03
81	GO:0010109: regulation of photosynthesis	2.94E-03
82	GO:0010236: plastoquinone biosynthetic process	2.94E-03
83	GO:0006200: obsolete ATP catabolic process	3.33E-03
84	GO:0009965: leaf morphogenesis	3.61E-03
85	GO:0009765: photosynthesis, light harvesting	4.07E-03
86	GO:0016024: CDP-diacylglycerol biosynthetic process	5.01E-03
87	GO:0043067: regulation of programmed cell death	5.01E-03
88	GO:0007186: G-protein coupled receptor signaling pathway	5.01E-03
89	GO:0019344: cysteine biosynthetic process	5.14E-03
90	GO:0045454: cell redox homeostasis	5.85E-03
91	GO:0009793: embryo development ending in seed dormancy	6.71E-03
92	GO:0019216: regulation of lipid metabolic process	7.41E-03
93	GO:0010304: PSII associated light-harvesting complex II catabolic process	7.41E-03
94	GO:0051205: protein insertion into membrane	7.41E-03
95	GO:0045037: protein import into chloroplast stroma	7.41E-03
96	GO:0006353: DNA-templated transcription, termination	7.41E-03
97	GO:0006014: D-ribose metabolic process	7.41E-03
98	GO:0007389: pattern specification process	7.41E-03
99	GO:0042545: cell wall modification	7.69E-03
100	GO:0006631: fatty acid metabolic process	8.80E-03
101	GO:0019684: photosynthesis, light reaction	8.80E-03
102	GO:0010155: regulation of proton transport	9.99E-03
103	GO:0018298: protein-chromophore linkage	9.99E-03
104	GO:0006796: phosphate-containing compound metabolic process	1.01E-02
105	GO:0060416: response to growth hormone	1.01E-02
106	GO:0009772: photosynthetic electron transport in photosystem II	1.01E-02
107	GO:0015994: chlorophyll metabolic process	1.01E-02
108	GO:0070084: protein initiator methionine removal	1.01E-02
109	GO:0009308: amine metabolic process	1.01E-02
110	GO:0070838: divalent metal ion transport	1.01E-02
111	GO:0006414: translational elongation	1.03E-02
112	GO:0046777: protein autophosphorylation	1.26E-02
113	GO:0010224: response to UV-B	1.26E-02
114	GO:0008652: cellular amino acid biosynthetic process	1.28E-02
115	GO:0080167: response to karrikin	1.30E-02
116	GO:0007005: mitochondrion organization	1.31E-02
117	GO:0009913: epidermal cell differentiation	1.31E-02
118	GO:0009306: protein secretion	1.31E-02
119	GO:0010206: photosystem II repair	1.64E-02
120	GO:0009926: auxin polar transport	1.64E-02
121	GO:0009704: de-etiolation	1.64E-02
122	GO:0009987: cellular process	1.64E-02
123	GO:0009411: response to UV	1.64E-02
124	GO:0009814: defense response, incompatible interaction	1.64E-02
125	GO:0006184: obsolete GTP catabolic process	1.75E-02
126	GO:0015693: magnesium ion transport	2.00E-02
127	GO:0043039: tRNA aminoacylation	2.00E-02
128	GO:0030245: cellulose catabolic process	2.00E-02
129	GO:0000413: protein peptidyl-prolyl isomerization	2.06E-02
130	GO:0010015: root morphogenesis	2.38E-02
131	GO:0015977: carbon fixation	2.38E-02
132	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.38E-02
133	GO:0040007: growth	2.38E-02
134	GO:0009735: response to cytokinin	2.44E-02
135	GO:0006662: glycerol ether metabolic process	2.65E-02
136	GO:0009832: plant-type cell wall biogenesis	2.79E-02
137	GO:0009637: response to blue light	2.86E-02
138	GO:0009416: response to light stimulus	3.12E-02
139	GO:0048527: lateral root development	3.22E-02
140	GO:0009697: salicylic acid biosynthetic process	3.22E-02
141	GO:0010114: response to red light	3.31E-02
142	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.67E-02
143	GO:0006974: cellular response to DNA damage stimulus	3.67E-02
144	GO:0010218: response to far red light	3.79E-02
145	GO:0042742: defense response to bacterium	4.56E-02
146	GO:0051607: defense response to virus	4.63E-02
147	GO:0048316: seed development	4.63E-02
148	GO:0008033: tRNA processing	4.63E-02
149	GO:0031408: oxylipin biosynthetic process	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
4	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
5	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
6	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
7	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
8	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
9	GO:0031409: pigment binding	0.00E+00
10	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
11	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
12	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
13	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
14	GO:0005048: signal sequence binding	0.00E+00
15	GO:0005504: fatty acid binding	0.00E+00
16	GO:0003735: structural constituent of ribosome	2.47E-06
17	GO:0004812: aminoacyl-tRNA ligase activity	3.21E-06
18	GO:0045430: chalcone isomerase activity	4.97E-05
19	GO:0016872: intramolecular lyase activity	1.62E-04
20	GO:0009055: electron carrier activity	3.33E-04
21	GO:0004765: shikimate kinase activity	3.40E-04
22	GO:0015035: protein disulfide oxidoreductase activity	1.13E-03
23	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.31E-03
24	GO:0004831: tyrosine-tRNA ligase activity	1.31E-03
25	GO:0004821: histidine-tRNA ligase activity	1.31E-03
26	GO:0070402: NADPH binding	1.31E-03
27	GO:0004817: cysteine-tRNA ligase activity	1.31E-03
28	GO:0034256: chlorophyll(ide) b reductase activity	1.31E-03
29	GO:0004827: proline-tRNA ligase activity	1.31E-03
30	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.31E-03
31	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.31E-03
32	GO:0004828: serine-tRNA ligase activity	1.31E-03
33	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.71E-03
34	GO:0000049: tRNA binding	2.71E-03
35	GO:0004826: phenylalanine-tRNA ligase activity	2.94E-03
36	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	2.94E-03
37	GO:0004605: phosphatidate cytidylyltransferase activity	2.94E-03
38	GO:0033897: ribonuclease T2 activity	5.01E-03
39	GO:0003746: translation elongation factor activity	6.82E-03
40	GO:0016887: ATPase activity	7.32E-03
41	GO:0071949: FAD binding	7.41E-03
42	GO:0070569: uridylyltransferase activity	7.41E-03
43	GO:0004659: prenyltransferase activity	7.41E-03
44	GO:0004747: ribokinase activity	7.41E-03
45	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.41E-03
46	GO:0016984: ribulose-bisphosphate carboxylase activity	7.41E-03
47	GO:0016209: antioxidant activity	7.41E-03
48	GO:0016168: chlorophyll binding	9.99E-03
49	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.01E-02
50	GO:0070006: metalloaminopeptidase activity	1.01E-02
51	GO:0016987: sigma factor activity	1.01E-02
52	GO:0008235: metalloexopeptidase activity	1.31E-02
53	GO:0051537: 2 iron, 2 sulfur cluster binding	1.40E-02
54	GO:0008810: cellulase activity	1.64E-02
55	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.64E-02
56	GO:0003723: RNA binding	1.90E-02
57	GO:0008312: 7S RNA binding	2.00E-02
58	GO:0043022: ribosome binding	2.00E-02
59	GO:0004427: inorganic diphosphatase activity	2.38E-02
60	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.44E-02
61	GO:0004177: aminopeptidase activity	2.79E-02
62	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.79E-02
63	GO:0015095: magnesium ion transmembrane transporter activity	2.79E-02
64	GO:0046873: metal ion transmembrane transporter activity	2.79E-02
65	GO:0003690: double-stranded DNA binding	3.67E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0009507: chloroplast	5.66E-49
3	GO:0009570: chloroplast stroma	1.77E-34
4	GO:0009941: chloroplast envelope	1.30E-18
5	GO:0009535: chloroplast thylakoid membrane	7.68E-15
6	GO:0005840: ribosome	1.20E-09
7	GO:0009579: thylakoid	5.83E-07
8	GO:0009543: chloroplast thylakoid lumen	1.54E-06
9	GO:0009534: chloroplast thylakoid	5.80E-06
10	GO:0031977: thylakoid lumen	1.55E-05
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.12E-05
12	GO:0030529: intracellular ribonucleoprotein complex	2.67E-04
13	GO:0009295: nucleoid	3.80E-04
14	GO:0080085: signal recognition particle, chloroplast targeting	1.31E-03
15	GO:0009528: plastid inner membrane	1.31E-03
16	GO:0042406: extrinsic component of endoplasmic reticulum membrane	1.31E-03
17	GO:0000311: plastid large ribosomal subunit	1.31E-03
18	GO:0009527: plastid outer membrane	1.31E-03
19	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.31E-03
20	GO:0005622: intracellular	2.74E-03
21	GO:0009523: photosystem II	4.20E-03
22	GO:0055028: cortical microtubule	5.01E-03
23	GO:0009508: plastid chromosome	1.01E-02
24	GO:0031225: anchored component of membrane	1.31E-02
25	GO:0048500: signal recognition particle	1.64E-02
26	GO:0009532: plastid stroma	2.00E-02
27	GO:0009536: plastid	2.22E-02
28	GO:0015934: large ribosomal subunit	3.31E-02
29	GO:0042651: thylakoid membrane	4.63E-02