co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G105827

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
2	GO:0042780: tRNA 3'-end processing	0.00E+00
3	GO:1900865: chloroplast RNA modification	0.00E+00
4	GO:0043953: protein transport by the Tat complex	0.00E+00
5	GO:0046506: sulfolipid biosynthetic process	0.00E+00
6	GO:0090342: regulation of cell aging	0.00E+00
7	GO:0009658: chloroplast organization	3.99E-09
8	GO:0006399: tRNA metabolic process	4.47E-08
9	GO:0006364: rRNA processing	1.73E-07
10	GO:0006457: protein folding	4.92E-07
11	GO:0045036: protein targeting to chloroplast	6.40E-07
12	GO:0010027: thylakoid membrane organization	3.05E-06
13	GO:0045038: protein import into chloroplast thylakoid membrane	4.33E-05
14	GO:0006782: protoporphyrinogen IX biosynthetic process	4.33E-05
15	GO:0006591: ornithine metabolic process	3.74E-04
16	GO:0009407: toxin catabolic process	4.44E-04
17	GO:0016556: mRNA modification	5.53E-04
18	GO:0006779: porphyrin-containing compound biosynthetic process	6.74E-04
19	GO:0009642: response to light intensity	8.76E-04
20	GO:1901671: positive regulation of superoxide dismutase activity	8.76E-04
21	GO:0030308: negative regulation of cell growth	8.76E-04
22	GO:0006655: phosphatidylglycerol biosynthetic process	9.57E-04
23	GO:0042793: transcription from plastid promoter	9.57E-04
24	GO:0008299: isoprenoid biosynthetic process	1.12E-03
25	GO:0010038: response to metal ion	1.48E-03
26	GO:0051085: chaperone mediated protein folding requiring cofactor	1.48E-03
27	GO:0010731: protein glutathionylation	1.48E-03
28	GO:0016075: rRNA catabolic process	1.48E-03
29	GO:0009247: glycolipid biosynthetic process	1.48E-03
30	GO:0019760: glucosinolate metabolic process	1.48E-03
31	GO:0010103: stomatal complex morphogenesis	1.88E-03
32	GO:0000373: Group II intron splicing	2.15E-03
33	GO:0042026: protein refolding	2.15E-03
34	GO:0071704: organic substance metabolic process	2.15E-03
35	GO:0051205: protein insertion into membrane	2.15E-03
36	GO:0019375: galactolipid biosynthetic process	2.15E-03
37	GO:0045893: positive regulation of transcription, DNA-templated	2.40E-03
38	GO:0009308: amine metabolic process	2.89E-03
39	GO:0010468: regulation of gene expression	2.89E-03
40	GO:0019252: starch biosynthetic process	3.32E-03
41	GO:0009902: chloroplast relocation	3.39E-03
42	GO:0048229: gametophyte development	3.76E-03
43	GO:0000105: histidine biosynthetic process	3.76E-03
44	GO:0006749: glutathione metabolic process	3.76E-03
45	GO:0009306: protein secretion	3.76E-03
46	GO:0009735: response to cytokinin	4.02E-03
47	GO:0009073: aromatic amino acid family biosynthetic process	4.37E-03
48	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.47E-03
49	GO:0010583: response to cyclopentenone	4.68E-03
50	GO:0034660: ncRNA metabolic process	4.68E-03
51	GO:0051604: protein maturation	5.66E-03
52	GO:0016226: iron-sulfur cluster assembly	5.85E-03
53	GO:0000023: maltose metabolic process	6.70E-03
54	GO:0045087: innate immune response	6.73E-03
55	GO:0045454: cell redox homeostasis	7.37E-03
56	GO:0051607: defense response to virus	1.29E-02
57	GO:0009409: response to cold	1.72E-02
58	GO:0019684: photosynthesis, light reaction	1.73E-02
59	GO:0009657: plastid organization	1.73E-02
60	GO:0016036: cellular response to phosphate starvation	1.89E-02
61	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.89E-02
62	GO:0008219: cell death	1.89E-02
63	GO:0044267: cellular protein metabolic process	1.89E-02
64	GO:0010267: production of ta-siRNAs involved in RNA interference	1.89E-02
65	GO:0009627: systemic acquired resistance	2.06E-02
66	GO:0035304: regulation of protein dephosphorylation	2.22E-02
67	GO:0006508: proteolysis	2.25E-02
68	GO:0006869: lipid transport	2.40E-02
69	GO:0006098: pentose-phosphate shunt	2.52E-02
70	GO:0006520: cellular amino acid metabolic process	3.13E-02
71	GO:0006626: protein targeting to mitochondrion	3.13E-02
72	GO:0006184: obsolete GTP catabolic process	3.29E-02
73	GO:0048573: photoperiodism, flowering	3.52E-02
74	GO:0006662: glycerol ether metabolic process	3.73E-02
75	GO:0009637: response to blue light	3.94E-02
76	GO:0009790: embryo development	4.15E-02
77	GO:0019761: glucosinolate biosynthetic process	4.15E-02
78	GO:0010114: response to red light	4.37E-02
79	GO:0010218: response to far red light	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
2	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
3	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
4	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
5	GO:0004853: uroporphyrinogen decarboxylase activity	5.20E-06
6	GO:0000774: adenyl-nucleotide exchange factor activity	1.89E-05
7	GO:0051082: unfolded protein binding	1.25E-04
8	GO:0051087: chaperone binding	2.62E-04
9	GO:0004362: glutathione-disulfide reductase activity	3.74E-04
10	GO:0004585: ornithine carbamoyltransferase activity	3.74E-04
11	GO:0008146: sulfotransferase activity	3.74E-04
12	GO:0045174: glutathione dehydrogenase (ascorbate) activity	3.74E-04
13	GO:0047134: protein-disulfide reductase activity	8.76E-04
14	GO:0005496: steroid binding	8.76E-04
15	GO:0016831: carboxy-lyase activity	1.29E-03
16	GO:0016743: carboxyl- or carbamoyltransferase activity	1.48E-03
17	GO:0000287: magnesium ion binding	1.76E-03
18	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	2.15E-03
19	GO:0016868: intramolecular transferase activity, phosphotransferases	2.89E-03
20	GO:0005507: copper ion binding	3.07E-03
21	GO:0004252: serine-type endopeptidase activity	3.15E-03
22	GO:0016817: hydrolase activity, acting on acid anhydrides	3.76E-03
23	GO:0004525: ribonuclease III activity	4.68E-03
24	GO:0008236: serine-type peptidase activity	4.72E-03
25	GO:0008266: poly(U) RNA binding	6.73E-03
26	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.85E-03
27	GO:0008233: peptidase activity	8.45E-03
28	GO:0046914: transition metal ion binding	9.04E-03
29	GO:0042803: protein homodimerization activity	1.12E-02
30	GO:0048038: quinone binding	1.44E-02
31	GO:0015035: protein disulfide oxidoreductase activity	1.50E-02
32	GO:0005525: GTP binding	2.07E-02
33	GO:0008565: protein transporter activity	2.40E-02
34	GO:0031072: heat shock protein binding	2.40E-02
35	GO:0016597: amino acid binding	2.94E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	9.44E-14
4	GO:0009570: chloroplast stroma	1.31E-08
5	GO:0009579: thylakoid	6.16E-07
6	GO:0009535: chloroplast thylakoid membrane	1.41E-06
7	GO:0009941: chloroplast envelope	4.35E-06
8	GO:0009532: plastid stroma	4.97E-06
9	GO:0009840: chloroplastic endopeptidase Clp complex	7.95E-05
10	GO:0005759: mitochondrial matrix	3.14E-04
11	GO:0009526: plastid envelope	3.74E-04
12	GO:0044445: cytosolic part	3.74E-04
13	GO:0009534: chloroplast thylakoid	1.29E-03
14	GO:0019898: extrinsic component of membrane	3.76E-03
15	GO:0009654: photosystem II oxygen evolving complex	4.68E-03
16	GO:0010319: stromule	5.45E-03
17	GO:0031977: thylakoid lumen	5.85E-03
18	GO:0009295: nucleoid	1.03E-02
19	GO:0009543: chloroplast thylakoid lumen	1.29E-02
20	GO:0009706: chloroplast inner membrane	2.75E-02
21	GO:0009523: photosystem II	3.52E-02
22	GO:0009536: plastid	4.01E-02