co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G105644

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
2	GO:0042550: photosystem I stabilization	0.00E+00
3	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
4	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
5	GO:0010028: xanthophyll cycle	0.00E+00
6	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.96E-17
7	GO:0006098: pentose-phosphate shunt	7.98E-14
8	GO:0010027: thylakoid membrane organization	4.23E-13
9	GO:0010207: photosystem II assembly	1.63E-12
10	GO:0006364: rRNA processing	1.13E-09
11	GO:0015979: photosynthesis	1.90E-09
12	GO:0015995: chlorophyll biosynthetic process	7.04E-09
13	GO:0009902: chloroplast relocation	1.26E-07
14	GO:0016117: carotenoid biosynthetic process	3.66E-07
15	GO:0009773: photosynthetic electron transport in photosystem I	9.55E-07
16	GO:0000096: sulfur amino acid metabolic process	2.44E-06
17	GO:0009767: photosynthetic electron transport chain	4.80E-06
18	GO:0042793: transcription from plastid promoter	4.80E-06
19	GO:0009108: coenzyme biosynthetic process	1.03E-05
20	GO:0009106: lipoate metabolic process	1.03E-05
21	GO:0006766: vitamin metabolic process	1.03E-05
22	GO:0009416: response to light stimulus	2.63E-05
23	GO:0006546: glycine catabolic process	8.14E-05
24	GO:0045036: protein targeting to chloroplast	1.08E-04
25	GO:0019344: cysteine biosynthetic process	1.39E-04
26	GO:0009637: response to blue light	1.39E-04
27	GO:0006636: unsaturated fatty acid biosynthetic process	1.76E-04
28	GO:0010114: response to red light	1.84E-04
29	GO:0070838: divalent metal ion transport	1.88E-04
30	GO:0019748: secondary metabolic process	1.88E-04
31	GO:0016226: iron-sulfur cluster assembly	2.09E-04
32	GO:0010218: response to far red light	2.36E-04
33	GO:0019252: starch biosynthetic process	2.64E-04
34	GO:0000023: maltose metabolic process	2.66E-04
35	GO:0030154: cell differentiation	2.67E-04
36	GO:0010155: regulation of proton transport	3.20E-04
37	GO:0010103: stomatal complex morphogenesis	3.79E-04
38	GO:0010206: photosystem II repair	4.25E-04
39	GO:0034660: ncRNA metabolic process	4.25E-04
40	GO:0030003: cellular cation homeostasis	4.25E-04
41	GO:0080167: response to karrikin	4.78E-04
42	GO:0009695: jasmonic acid biosynthetic process	5.17E-04
43	GO:0006434: seryl-tRNA aminoacylation	6.34E-04
44	GO:0006573: valine metabolic process	6.34E-04
45	GO:0006412: translation	6.34E-04
46	GO:0009768: photosynthesis, light harvesting in photosystem I	6.34E-04
47	GO:0009069: serine family amino acid metabolic process	6.34E-04
48	GO:0019676: ammonia assimilation cycle	6.34E-04
49	GO:0043085: positive regulation of catalytic activity	6.46E-04
50	GO:0009072: aromatic amino acid family metabolic process	7.59E-04
51	GO:0006354: DNA-templated transcription, elongation	1.20E-03
52	GO:0016556: mRNA modification	1.20E-03
53	GO:0009073: aromatic amino acid family biosynthetic process	1.22E-03
54	GO:0009765: photosynthesis, light harvesting	1.45E-03
55	GO:0032544: plastid translation	1.47E-03
56	GO:0044272: sulfur compound biosynthetic process	1.47E-03
57	GO:0019761: glucosinolate biosynthetic process	1.49E-03
58	GO:0019760: glucosinolate metabolic process	2.43E-03
59	GO:0006733: oxidoreduction coenzyme metabolic process	2.43E-03
60	GO:0016024: CDP-diacylglycerol biosynthetic process	2.43E-03
61	GO:0019684: photosynthesis, light reaction	3.06E-03
62	GO:0009657: plastid organization	3.06E-03
63	GO:0008652: cellular amino acid biosynthetic process	3.35E-03
64	GO:0018298: protein-chromophore linkage	3.49E-03
65	GO:0006014: D-ribose metabolic process	3.58E-03
66	GO:0010196: nonphotochemical quenching	3.58E-03
67	GO:0050821: protein stabilization	3.58E-03
68	GO:0006782: protoporphyrinogen IX biosynthetic process	3.58E-03
69	GO:0019216: regulation of lipid metabolic process	3.58E-03
70	GO:0009595: detection of biotic stimulus	3.58E-03
71	GO:0009117: nucleotide metabolic process	3.58E-03
72	GO:0006353: DNA-templated transcription, termination	3.58E-03
73	GO:0022900: electron transport chain	3.86E-03
74	GO:0009965: leaf morphogenesis	4.42E-03
75	GO:0006796: phosphate-containing compound metabolic process	4.88E-03
76	GO:0006569: tryptophan catabolic process	4.88E-03
77	GO:0009772: photosynthetic electron transport in photosystem II	4.88E-03
78	GO:0050790: regulation of catalytic activity	4.88E-03
79	GO:0009813: flavonoid biosynthetic process	4.88E-03
80	GO:0043900: regulation of multi-organism process	4.88E-03
81	GO:0007568: aging	4.88E-03
82	GO:0015994: chlorophyll metabolic process	4.88E-03
83	GO:0007005: mitochondrion organization	6.30E-03
84	GO:0006542: glutamine biosynthetic process	6.30E-03
85	GO:0006783: heme biosynthetic process	6.30E-03
86	GO:0045893: positive regulation of transcription, DNA-templated	6.34E-03
87	GO:0000413: protein peptidyl-prolyl isomerization	7.21E-03
88	GO:0033014: tetrapyrrole biosynthetic process	7.88E-03
89	GO:0009411: response to UV	7.88E-03
90	GO:0009735: response to cytokinin	8.55E-03
91	GO:0010310: regulation of hydrogen peroxide metabolic process	9.57E-03
92	GO:0015977: carbon fixation	1.14E-02
93	GO:0009684: indoleacetic acid biosynthetic process	1.33E-02
94	GO:0009697: salicylic acid biosynthetic process	1.53E-02
95	GO:0009744: response to sucrose	1.71E-02
96	GO:0009409: response to cold	1.72E-02
97	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.74E-02
98	GO:0006779: porphyrin-containing compound biosynthetic process	1.74E-02
99	GO:0006096: glycolytic process	1.99E-02
100	GO:0009644: response to high light intensity	2.15E-02
101	GO:0006655: phosphatidylglycerol biosynthetic process	2.20E-02
102	GO:0031408: oxylipin biosynthetic process	2.20E-02
103	GO:0007030: Golgi organization	2.44E-02
104	GO:0009750: response to fructose	2.69E-02
105	GO:0006833: water transport	2.69E-02
106	GO:0006972: hyperosmotic response	2.69E-02
107	GO:0042545: cell wall modification	2.69E-02
108	GO:0055114: oxidation-reduction process	2.84E-02
109	GO:0009749: response to glucose	2.95E-02
110	GO:0006631: fatty acid metabolic process	2.95E-02
111	GO:0009966: regulation of signal transduction	3.22E-02
112	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.22E-02
113	GO:0006612: protein targeting to membrane	3.50E-02
114	GO:0010200: response to chitin	3.50E-02
115	GO:0035304: regulation of protein dephosphorylation	3.79E-02
116	GO:0046777: protein autophosphorylation	3.79E-02
117	GO:0010363: regulation of plant-type hypersensitive response	3.79E-02
118	GO:0006807: nitrogen compound metabolic process	3.79E-02
119	GO:0010224: response to UV-B	3.79E-02
120	GO:0009867: jasmonic acid mediated signaling pathway	4.08E-02
121	GO:0015986: ATP synthesis coupled proton transport	4.08E-02
122	GO:0009817: defense response to fungus, incompatible interaction	4.08E-02
123	GO:0031348: negative regulation of defense response	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0031409: pigment binding	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	0.00E+00
4	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
5	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
6	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
7	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
8	GO:0004802: transketolase activity	0.00E+00
9	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
10	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
11	GO:0051738: xanthophyll binding	0.00E+00
12	GO:0016168: chlorophyll binding	4.97E-07
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.19E-05
14	GO:0016209: antioxidant activity	1.05E-04
15	GO:0003735: structural constituent of ribosome	3.22E-04
16	GO:0051537: 2 iron, 2 sulfur cluster binding	5.17E-04
17	GO:0009055: electron carrier activity	6.15E-04
18	GO:0004828: serine-tRNA ligase activity	6.34E-04
19	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	6.34E-04
20	GO:0008883: glutamyl-tRNA reductase activity	6.34E-04
21	GO:0004618: phosphoglycerate kinase activity	6.34E-04
22	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.47E-03
23	GO:0045430: chalcone isomerase activity	1.47E-03
24	GO:0004605: phosphatidate cytidylyltransferase activity	1.47E-03
25	GO:0051920: peroxiredoxin activity	1.47E-03
26	GO:0016872: intramolecular lyase activity	2.43E-03
27	GO:0004332: fructose-bisphosphate aldolase activity	3.58E-03
28	GO:0004747: ribokinase activity	3.58E-03
29	GO:0004765: shikimate kinase activity	3.58E-03
30	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.58E-03
31	GO:0016984: ribulose-bisphosphate carboxylase activity	3.58E-03
32	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.88E-03
33	GO:0030234: enzyme regulator activity	4.88E-03
34	GO:0004356: glutamate-ammonia ligase activity	6.30E-03
35	GO:0051536: iron-sulfur cluster binding	7.10E-03
36	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	7.88E-03
37	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.55E-03
38	GO:0004427: inorganic diphosphatase activity	1.14E-02
39	GO:0000049: tRNA binding	1.33E-02
40	GO:0043531: ADP binding	1.74E-02
41	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.74E-02
42	GO:0004497: monooxygenase activity	1.77E-02
43	GO:0004713: protein tyrosine kinase activity	2.69E-02
44	GO:0030145: manganese ion binding	2.95E-02
45	GO:0015035: protein disulfide oxidoreductase activity	3.18E-02
46	GO:0031072: heat shock protein binding	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0009782: photosystem I antenna complex	0.00E+00
3	GO:0009507: chloroplast	8.24E-31
4	GO:0009535: chloroplast thylakoid membrane	2.54E-21
5	GO:0009941: chloroplast envelope	3.79E-20
6	GO:0009570: chloroplast stroma	6.93E-20
7	GO:0009579: thylakoid	2.73E-14
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.67E-10
9	GO:0009543: chloroplast thylakoid lumen	9.93E-08
10	GO:0009534: chloroplast thylakoid	3.38E-06
11	GO:0031977: thylakoid lumen	1.51E-05
12	GO:0010287: plastoglobule	5.07E-05
13	GO:0009523: photosystem II	1.03E-04
14	GO:0005840: ribosome	2.09E-04
15	GO:0009522: photosystem I	4.45E-04
16	GO:0030093: chloroplast photosystem I	6.34E-04
17	GO:0009517: PSII associated light-harvesting complex II	6.34E-04
18	GO:0042406: extrinsic component of endoplasmic reticulum membrane	6.34E-04
19	GO:0009533: chloroplast stromal thylakoid	1.47E-03
20	GO:0010319: stromule	1.64E-03
21	GO:0048046: apoplast	2.12E-03
22	GO:0030529: intracellular ribonucleoprotein complex	4.00E-03
23	GO:0009508: plastid chromosome	4.88E-03
24	GO:0019898: extrinsic component of membrane	6.30E-03
25	GO:0009654: photosystem II oxygen evolving complex	7.88E-03
26	GO:0016020: membrane	1.31E-02
27	GO:0009295: nucleoid	1.74E-02
28	GO:0042651: thylakoid membrane	2.20E-02