co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G103101

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032544: plastid translation	0.00E+00
2	GO:0051188: cofactor biosynthetic process	0.00E+00
3	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
4	GO:0009234: menaquinone biosynthetic process	0.00E+00
5	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
6	GO:0010028: xanthophyll cycle	0.00E+00
7	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.13E-18
8	GO:0006098: pentose-phosphate shunt	9.27E-12
9	GO:0010027: thylakoid membrane organization	6.13E-11
10	GO:0009902: chloroplast relocation	4.73E-08
11	GO:0015995: chlorophyll biosynthetic process	5.55E-08
12	GO:0006412: translation	3.38E-07
13	GO:0000096: sulfur amino acid metabolic process	1.40E-06
14	GO:0042793: transcription from plastid promoter	2.42E-06
15	GO:0009108: coenzyme biosynthetic process	6.00E-06
16	GO:0009106: lipoate metabolic process	6.00E-06
17	GO:0006766: vitamin metabolic process	6.00E-06
18	GO:0016226: iron-sulfur cluster assembly	6.85E-06
19	GO:0042372: phylloquinone biosynthetic process	9.04E-06
20	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.04E-06
21	GO:0006364: rRNA processing	1.11E-05
22	GO:0006354: DNA-templated transcription, elongation	3.56E-05
23	GO:0006546: glycine catabolic process	4.94E-05
24	GO:0010207: photosystem II assembly	5.59E-05
25	GO:0045036: protein targeting to chloroplast	6.61E-05
26	GO:0006636: unsaturated fatty acid biosynthetic process	1.09E-04
27	GO:0019748: secondary metabolic process	1.31E-04
28	GO:0030154: cell differentiation	1.67E-04
29	GO:0010155: regulation of proton transport	2.02E-04
30	GO:0009773: photosynthetic electron transport in photosystem I	2.85E-04
31	GO:0034660: ncRNA metabolic process	3.03E-04
32	GO:0009695: jasmonic acid biosynthetic process	3.33E-04
33	GO:0006434: seryl-tRNA aminoacylation	5.07E-04
34	GO:0006573: valine metabolic process	5.07E-04
35	GO:0009069: serine family amino acid metabolic process	5.07E-04
36	GO:0019676: ammonia assimilation cycle	5.07E-04
37	GO:0009072: aromatic amino acid family metabolic process	5.45E-04
38	GO:0009073: aromatic amino acid family biosynthetic process	8.01E-04
39	GO:0016556: mRNA modification	8.64E-04
40	GO:0016117: carotenoid biosynthetic process	8.89E-04
41	GO:0009637: response to blue light	8.89E-04
42	GO:0010114: response to red light	1.09E-03
43	GO:0044272: sulfur compound biosynthetic process	1.18E-03
44	GO:0010218: response to far red light	1.30E-03
45	GO:0006655: phosphatidylglycerol biosynthetic process	1.48E-03
46	GO:0009658: chloroplast organization	1.55E-03
47	GO:0015979: photosynthesis	1.69E-03
48	GO:0006733: oxidoreduction coenzyme metabolic process	1.98E-03
49	GO:0016024: CDP-diacylglycerol biosynthetic process	1.98E-03
50	GO:0008652: cellular amino acid biosynthetic process	2.23E-03
51	GO:0009833: plant-type primary cell wall biogenesis	2.86E-03
52	GO:0019216: regulation of lipid metabolic process	2.86E-03
53	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.86E-03
54	GO:0009117: nucleotide metabolic process	2.86E-03
55	GO:0006353: DNA-templated transcription, termination	2.86E-03
56	GO:0009965: leaf morphogenesis	2.91E-03
57	GO:0070838: divalent metal ion transport	3.92E-03
58	GO:0006569: tryptophan catabolic process	3.92E-03
59	GO:0007568: aging	3.92E-03
60	GO:0015994: chlorophyll metabolic process	3.92E-03
61	GO:0045893: positive regulation of transcription, DNA-templated	4.22E-03
62	GO:0009913: epidermal cell differentiation	5.05E-03
63	GO:0007005: mitochondrion organization	5.05E-03
64	GO:0006542: glutamine biosynthetic process	5.05E-03
65	GO:0000413: protein peptidyl-prolyl isomerization	5.23E-03
66	GO:0010206: photosystem II repair	6.30E-03
67	GO:0030003: cellular cation homeostasis	6.30E-03
68	GO:0006662: glycerol ether metabolic process	6.73E-03
69	GO:0019344: cysteine biosynthetic process	7.27E-03
70	GO:0019761: glucosinolate biosynthetic process	7.83E-03
71	GO:0015977: carbon fixation	9.09E-03
72	GO:0048481: plant ovule development	1.03E-02
73	GO:0009684: indoleacetic acid biosynthetic process	1.06E-02
74	GO:0006418: tRNA aminoacylation for protein translation	1.10E-02
75	GO:0009744: response to sucrose	1.24E-02
76	GO:0009765: photosynthesis, light harvesting	1.39E-02
77	GO:0010228: vegetative to reproductive phase transition of meristem	1.56E-02
78	GO:0009644: response to high light intensity	1.56E-02
79	GO:0009767: photosynthetic electron transport chain	1.75E-02
80	GO:0031408: oxylipin biosynthetic process	1.75E-02
81	GO:0007030: Golgi organization	1.95E-02
82	GO:0015996: chlorophyll catabolic process	1.95E-02
83	GO:0009750: response to fructose	2.15E-02
84	GO:0006833: water transport	2.15E-02
85	GO:0006972: hyperosmotic response	2.15E-02
86	GO:0042545: cell wall modification	2.15E-02
87	GO:0019684: photosynthesis, light reaction	2.36E-02
88	GO:0009749: response to glucose	2.36E-02
89	GO:0009657: plastid organization	2.36E-02
90	GO:0006631: fatty acid metabolic process	2.36E-02
91	GO:0018298: protein-chromophore linkage	2.57E-02
92	GO:0010103: stomatal complex morphogenesis	2.79E-02
93	GO:0009416: response to light stimulus	2.98E-02
94	GO:0035304: regulation of protein dephosphorylation	3.02E-02
95	GO:0046777: protein autophosphorylation	3.02E-02
96	GO:0006807: nitrogen compound metabolic process	3.02E-02
97	GO:0009817: defense response to fungus, incompatible interaction	3.25E-02
98	GO:0042254: ribosome biogenesis	3.74E-02
99	GO:0007017: microtubule-based process	3.74E-02
100	GO:0009853: photorespiration	3.99E-02
101	GO:0055114: oxidation-reduction process	4.35E-02
102	GO:0009735: response to cytokinin	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
3	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
4	GO:0045550: geranylgeranyl reductase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
7	GO:0003735: structural constituent of ribosome	6.35E-07
8	GO:0004828: serine-tRNA ligase activity	5.07E-04
9	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	5.07E-04
10	GO:0004831: tyrosine-tRNA ligase activity	5.07E-04
11	GO:0034256: chlorophyll(ide) b reductase activity	5.07E-04
12	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	5.07E-04
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.94E-04
14	GO:0004605: phosphatidate cytidylyltransferase activity	1.18E-03
15	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.18E-03
16	GO:0016209: antioxidant activity	2.86E-03
17	GO:0071949: FAD binding	2.86E-03
18	GO:0004332: fructose-bisphosphate aldolase activity	2.86E-03
19	GO:0004765: shikimate kinase activity	2.86E-03
20	GO:0016984: ribulose-bisphosphate carboxylase activity	2.86E-03
21	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.92E-03
22	GO:0019843: rRNA binding	4.79E-03
23	GO:0004356: glutamate-ammonia ligase activity	5.05E-03
24	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.20E-03
25	GO:0042578: phosphoric ester hydrolase activity	9.09E-03
26	GO:0000049: tRNA binding	1.06E-02
27	GO:0004497: monooxygenase activity	1.18E-02
28	GO:0004812: aminoacyl-tRNA ligase activity	1.24E-02
29	GO:0016760: cellulose synthase (UDP-forming) activity	1.95E-02
30	GO:0015035: protein disulfide oxidoreductase activity	2.31E-02
31	GO:0016168: chlorophyll binding	2.57E-02
32	GO:0051537: 2 iron, 2 sulfur cluster binding	3.25E-02
33	GO:0031072: heat shock protein binding	3.25E-02
34	GO:0009055: electron carrier activity	4.07E-02
35	GO:0003723: RNA binding	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	9.06E-26
2	GO:0009570: chloroplast stroma	3.70E-23
3	GO:0009941: chloroplast envelope	3.19E-15
4	GO:0005840: ribosome	1.39E-10
5	GO:0009579: thylakoid	3.32E-08
6	GO:0009535: chloroplast thylakoid membrane	1.45E-07
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.13E-06
8	GO:0009543: chloroplast thylakoid lumen	8.55E-05
9	GO:0031977: thylakoid lumen	1.16E-04
10	GO:0030529: intracellular ribonucleoprotein complex	1.23E-04
11	GO:0000311: plastid large ribosomal subunit	5.07E-04
12	GO:0055028: cortical microtubule	1.98E-03
13	GO:0009534: chloroplast thylakoid	2.23E-03
14	GO:0005622: intracellular	2.65E-03
15	GO:0015934: large ribosomal subunit	8.42E-03
16	GO:0022626: cytosolic ribosome	2.30E-02
17	GO:0009522: photosystem I	3.02E-02
18	GO:0009523: photosystem II	4.79E-02