co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G100043

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900865: chloroplast RNA modification	0.00E+00
2	GO:0006591: ornithine metabolic process	0.00E+00
3	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
4	GO:0043953: protein transport by the Tat complex	0.00E+00
5	GO:0006457: protein folding	3.99E-08
6	GO:0009658: chloroplast organization	2.40E-05
7	GO:0009306: protein secretion	6.54E-05
8	GO:0006399: tRNA metabolic process	1.38E-04
9	GO:0010027: thylakoid membrane organization	1.68E-04
10	GO:0009407: toxin catabolic process	2.40E-04
11	GO:0018160: peptidyl-pyrromethane cofactor linkage	2.47E-04
12	GO:0045036: protein targeting to chloroplast	4.47E-04
13	GO:0009642: response to light intensity	5.87E-04
14	GO:1901671: positive regulation of superoxide dismutase activity	5.87E-04
15	GO:0006364: rRNA processing	6.98E-04
16	GO:0044267: cellular protein metabolic process	9.36E-04
17	GO:0051085: chaperone mediated protein folding requiring cofactor	1.00E-03
18	GO:0010731: protein glutathionylation	1.00E-03
19	GO:0016075: rRNA catabolic process	1.00E-03
20	GO:0006241: CTP biosynthetic process	1.47E-03
21	GO:0045038: protein import into chloroplast thylakoid membrane	1.47E-03
22	GO:0000373: Group II intron splicing	1.47E-03
23	GO:0042026: protein refolding	1.47E-03
24	GO:0006782: protoporphyrinogen IX biosynthetic process	1.47E-03
25	GO:0006165: nucleoside diphosphate phosphorylation	1.47E-03
26	GO:0006228: UTP biosynthetic process	1.47E-03
27	GO:0006353: DNA-templated transcription, termination	1.47E-03
28	GO:0006183: GTP biosynthetic process	1.47E-03
29	GO:0006520: cellular amino acid metabolic process	1.93E-03
30	GO:0010468: regulation of gene expression	1.98E-03
31	GO:0000105: histidine biosynthetic process	2.52E-03
32	GO:0006749: glutathione metabolic process	2.52E-03
33	GO:0009411: response to UV	3.14E-03
34	GO:0010583: response to cyclopentenone	3.14E-03
35	GO:0033014: tetrapyrrole biosynthetic process	3.14E-03
36	GO:0006189: 'de novo' IMP biosynthetic process	3.14E-03
37	GO:0051604: protein maturation	3.81E-03
38	GO:0045087: innate immune response	4.53E-03
39	GO:0009585: red, far-red light phototransduction	4.53E-03
40	GO:0016556: mRNA modification	6.05E-03
41	GO:0006779: porphyrin-containing compound biosynthetic process	6.89E-03
42	GO:0009409: response to cold	7.14E-03
43	GO:0010207: photosystem II assembly	7.68E-03
44	GO:0042793: transcription from plastid promoter	8.66E-03
45	GO:0051607: defense response to virus	8.66E-03
46	GO:0045893: positive regulation of transcription, DNA-templated	8.82E-03
47	GO:0008299: isoprenoid biosynthetic process	9.61E-03
48	GO:0010267: production of ta-siRNAs involved in RNA interference	1.26E-02
49	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.26E-02
50	GO:0008219: cell death	1.26E-02
51	GO:0009627: systemic acquired resistance	1.37E-02
52	GO:0035304: regulation of protein dephosphorylation	1.48E-02
53	GO:0006184: obsolete GTP catabolic process	1.85E-02
54	GO:0009853: photorespiration	1.96E-02
55	GO:0009902: chloroplast relocation	2.08E-02
56	GO:0006626: protein targeting to mitochondrion	2.08E-02
57	GO:0045454: cell redox homeostasis	2.10E-02
58	GO:0009735: response to cytokinin	2.35E-02
59	GO:0009073: aromatic amino acid family biosynthetic process	2.48E-02
60	GO:0009790: embryo development	2.76E-02
61	GO:0019761: glucosinolate biosynthetic process	2.76E-02
62	GO:0009408: response to heat	2.99E-02
63	GO:0016226: iron-sulfur cluster assembly	3.05E-02
64	GO:0048481: plant ovule development	3.35E-02
65	GO:0009058: biosynthetic process	3.38E-02
66	GO:0042542: response to hydrogen peroxide	3.82E-02
67	GO:0009793: embryo development ending in seed dormancy	4.33E-02

Rank	GO Term	Adjusted P value
1	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
2	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
3	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
4	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
5	GO:0000774: adenyl-nucleotide exchange factor activity	9.14E-06
6	GO:0016743: carboxyl- or carbamoyltransferase activity	9.14E-06
7	GO:0051087: chaperone binding	1.38E-04
8	GO:0045174: glutathione dehydrogenase (ascorbate) activity	2.47E-04
9	GO:0004362: glutathione-disulfide reductase activity	2.47E-04
10	GO:0004418: hydroxymethylbilane synthase activity	2.47E-04
11	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	5.87E-04
12	GO:0004853: uroporphyrinogen decarboxylase activity	5.87E-04
13	GO:0008565: protein transporter activity	1.32E-03
14	GO:0004550: nucleoside diphosphate kinase activity	1.47E-03
15	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	1.47E-03
16	GO:0016597: amino acid binding	1.77E-03
17	GO:0051082: unfolded protein binding	2.63E-03
18	GO:0004525: ribonuclease III activity	3.14E-03
19	GO:0000287: magnesium ion binding	4.39E-03
20	GO:0008266: poly(U) RNA binding	4.53E-03
21	GO:0046914: transition metal ion binding	6.05E-03
22	GO:0042803: protein homodimerization activity	6.30E-03
23	GO:0016831: carboxy-lyase activity	1.06E-02
24	GO:0004252: serine-type endopeptidase activity	1.09E-02
25	GO:0031072: heat shock protein binding	1.60E-02
26	GO:0008233: peptidase activity	1.61E-02
27	GO:0005507: copper ion binding	2.20E-02
28	GO:0008236: serine-type peptidase activity	2.62E-02
29	GO:0050661: NADP binding	3.98E-02

Rank	GO Term	Adjusted P value
1	GO:0055035: plastid thylakoid membrane	0.00E+00
2	GO:0042646: plastid nucleoid	0.00E+00
3	GO:0009570: chloroplast stroma	1.20E-12
4	GO:0009507: chloroplast	1.20E-10
5	GO:0009941: chloroplast envelope	2.00E-08
6	GO:0009579: thylakoid	9.45E-06
7	GO:0009535: chloroplast thylakoid membrane	1.11E-05
8	GO:0005759: mitochondrial matrix	1.35E-04
9	GO:0009532: plastid stroma	1.38E-04
10	GO:0009526: plastid envelope	2.47E-04
11	GO:0009840: chloroplastic endopeptidase Clp complex	1.98E-03
12	GO:0019898: extrinsic component of membrane	2.52E-03
13	GO:0010319: stromule	3.05E-03
14	GO:0009654: photosystem II oxygen evolving complex	3.14E-03
15	GO:0048046: apoplast	8.79E-03
16	GO:0009706: chloroplast inner membrane	1.83E-02
17	GO:0005737: cytoplasm	1.89E-02
18	GO:0009523: photosystem II	2.35E-02
19	GO:0031977: thylakoid lumen	3.05E-02
20	GO:0009534: chloroplast thylakoid	4.31E-02