co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G099907

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
2	GO:0043953: protein transport by the Tat complex	0.00E+00
3	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
4	GO:0032543: mitochondrial translation	0.00E+00
5	GO:0046506: sulfolipid biosynthetic process	0.00E+00
6	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
7	GO:1901259: chloroplast rRNA processing	0.00E+00
8	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
9	GO:0090342: regulation of cell aging	0.00E+00
10	GO:1900865: chloroplast RNA modification	0.00E+00
11	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
12	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
13	GO:0043043: peptide biosynthetic process	0.00E+00
14	GO:0042407: cristae formation	0.00E+00
15	GO:0090391: granum assembly	0.00E+00
16	GO:0010027: thylakoid membrane organization	8.06E-17
17	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.78E-13
18	GO:0006364: rRNA processing	3.25E-10
19	GO:0009902: chloroplast relocation	8.12E-09
20	GO:0009658: chloroplast organization	1.03E-08
21	GO:0045036: protein targeting to chloroplast	3.06E-08
22	GO:0006655: phosphatidylglycerol biosynthetic process	5.57E-08
23	GO:0042793: transcription from plastid promoter	5.57E-08
24	GO:0016226: iron-sulfur cluster assembly	8.52E-08
25	GO:0010207: photosystem II assembly	2.03E-07
26	GO:0006779: porphyrin-containing compound biosynthetic process	7.61E-07
27	GO:0006399: tRNA metabolic process	3.00E-06
28	GO:0045038: protein import into chloroplast thylakoid membrane	6.41E-06
29	GO:0006418: tRNA aminoacylation for protein translation	3.78E-05
30	GO:0045893: positive regulation of transcription, DNA-templated	4.17E-05
31	GO:1901671: positive regulation of superoxide dismutase activity	5.70E-05
32	GO:0032544: plastid translation	5.70E-05
33	GO:0015995: chlorophyll biosynthetic process	8.45E-05
34	GO:0009073: aromatic amino acid family biosynthetic process	1.11E-04
35	GO:0006457: protein folding	1.46E-04
36	GO:0006098: pentose-phosphate shunt	1.67E-04
37	GO:0010103: stomatal complex morphogenesis	1.99E-04
38	GO:0035304: regulation of protein dephosphorylation	2.46E-04
39	GO:0016556: mRNA modification	3.37E-04
40	GO:0006184: obsolete GTP catabolic process	3.44E-04
41	GO:0006782: protoporphyrinogen IX biosynthetic process	3.83E-04
42	GO:0010468: regulation of gene expression	6.51E-04
43	GO:0030154: cell differentiation	1.29E-03
44	GO:0034660: ncRNA metabolic process	1.40E-03
45	GO:0006788: heme oxidation	1.42E-03
46	GO:0018160: peptidyl-pyrromethane cofactor linkage	1.42E-03
47	GO:0006433: prolyl-tRNA aminoacylation	1.42E-03
48	GO:0006423: cysteinyl-tRNA aminoacylation	1.42E-03
49	GO:0009069: serine family amino acid metabolic process	1.42E-03
50	GO:0071722: detoxification of arsenic-containing substance	1.42E-03
51	GO:0006430: lysyl-tRNA aminoacylation	1.42E-03
52	GO:0006429: leucyl-tRNA aminoacylation	1.42E-03
53	GO:0008361: regulation of cell size	1.42E-03
54	GO:0006434: seryl-tRNA aminoacylation	1.42E-03
55	GO:0048481: plant ovule development	1.78E-03
56	GO:0009773: photosynthetic electron transport in photosystem I	2.06E-03
57	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.41E-03
58	GO:0009793: embryo development ending in seed dormancy	2.60E-03
59	GO:0006412: translation	2.70E-03
60	GO:0009409: response to cold	2.74E-03
61	GO:0009407: toxin catabolic process	3.04E-03
62	GO:0009225: nucleotide-sugar metabolic process	3.19E-03
63	GO:0019464: glycine decarboxylation via glycine cleavage system	3.19E-03
64	GO:0051555: flavonol biosynthetic process	3.19E-03
65	GO:0019481: L-alanine catabolic process, by transamination	3.19E-03
66	GO:0010109: regulation of photosynthesis	3.19E-03
67	GO:0010236: plastoquinone biosynthetic process	3.19E-03
68	GO:0010253: UDP-rhamnose biosynthetic process	3.19E-03
69	GO:0042372: phylloquinone biosynthetic process	3.19E-03
70	GO:0010024: phytochromobilin biosynthetic process	3.19E-03
71	GO:0010192: mucilage biosynthetic process	3.19E-03
72	GO:0009642: response to light intensity	3.19E-03
73	GO:0048653: anther development	3.19E-03
74	GO:0010380: regulation of chlorophyll biosynthetic process	3.19E-03
75	GO:0006354: DNA-templated transcription, elongation	3.78E-03
76	GO:0006200: obsolete ATP catabolic process	4.00E-03
77	GO:0006546: glycine catabolic process	4.59E-03
78	GO:0009735: response to cytokinin	4.87E-03
79	GO:0010731: protein glutathionylation	5.42E-03
80	GO:0045226: extracellular polysaccharide biosynthetic process	5.42E-03
81	GO:0016075: rRNA catabolic process	5.42E-03
82	GO:0043067: regulation of programmed cell death	5.42E-03
83	GO:0009231: riboflavin biosynthetic process	5.42E-03
84	GO:0009247: glycolipid biosynthetic process	5.42E-03
85	GO:0000304: response to singlet oxygen	5.42E-03
86	GO:0006450: regulation of translational fidelity	5.42E-03
87	GO:0006733: oxidoreduction coenzyme metabolic process	5.42E-03
88	GO:0010038: response to metal ion	5.42E-03
89	GO:0051085: chaperone mediated protein folding requiring cofactor	5.42E-03
90	GO:0019344: cysteine biosynthetic process	5.97E-03
91	GO:0051607: defense response to virus	6.43E-03
92	GO:0008299: isoprenoid biosynthetic process	7.50E-03
93	GO:0006636: unsaturated fatty acid biosynthetic process	7.50E-03
94	GO:0006165: nucleoside diphosphate phosphorylation	8.04E-03
95	GO:0006228: UTP biosynthetic process	8.04E-03
96	GO:0051205: protein insertion into membrane	8.04E-03
97	GO:0009117: nucleotide metabolic process	8.04E-03
98	GO:0006353: DNA-templated transcription, termination	8.04E-03
99	GO:0019375: galactolipid biosynthetic process	8.04E-03
100	GO:0006183: GTP biosynthetic process	8.04E-03
101	GO:0009098: leucine biosynthetic process	8.04E-03
102	GO:0006241: CTP biosynthetic process	8.04E-03
103	GO:0010214: seed coat development	8.04E-03
104	GO:0007389: pattern specification process	8.04E-03
105	GO:0042026: protein refolding	8.04E-03
106	GO:0071704: organic substance metabolic process	8.04E-03
107	GO:0042545: cell wall modification	8.65E-03
108	GO:0019684: photosynthesis, light reaction	9.89E-03
109	GO:0009772: photosynthetic electron transport in photosystem II	1.10E-02
110	GO:0019748: secondary metabolic process	1.10E-02
111	GO:0000096: sulfur amino acid metabolic process	1.10E-02
112	GO:0010315: auxin efflux	1.10E-02
113	GO:0035196: production of miRNAs involved in gene silencing by miRNA	1.12E-02
114	GO:0010267: production of ta-siRNAs involved in RNA interference	1.12E-02
115	GO:0006414: translational elongation	1.19E-02
116	GO:0009627: systemic acquired resistance	1.26E-02
117	GO:0006749: glutathione metabolic process	1.43E-02
118	GO:0031347: regulation of defense response	1.43E-02
119	GO:0009306: protein secretion	1.43E-02
120	GO:0048229: gametophyte development	1.43E-02
121	GO:0007005: mitochondrion organization	1.43E-02
122	GO:0010228: vegetative to reproductive phase transition of meristem	1.59E-02
123	GO:0009926: auxin polar transport	1.78E-02
124	GO:0019538: protein metabolic process	1.78E-02
125	GO:0009106: lipoate metabolic process	1.78E-02
126	GO:0032880: regulation of protein localization	1.78E-02
127	GO:0006766: vitamin metabolic process	1.78E-02
128	GO:0009411: response to UV	1.78E-02
129	GO:0009814: defense response, incompatible interaction	1.78E-02
130	GO:0009108: coenzyme biosynthetic process	1.78E-02
131	GO:0010583: response to cyclopentenone	1.78E-02
132	GO:0033014: tetrapyrrole biosynthetic process	1.78E-02
133	GO:0006189: 'de novo' IMP biosynthetic process	1.78E-02
134	GO:0009965: leaf morphogenesis	1.94E-02
135	GO:0030245: cellulose catabolic process	2.17E-02
136	GO:0009082: branched-chain amino acid biosynthetic process	2.17E-02
137	GO:0051604: protein maturation	2.17E-02
138	GO:0009585: red, far-red light phototransduction	2.59E-02
139	GO:0040007: growth	2.59E-02
140	GO:0010015: root morphogenesis	2.59E-02
141	GO:0045087: innate immune response	2.59E-02
142	GO:0001666: response to hypoxia	2.59E-02
143	GO:0000302: response to reactive oxygen species	3.03E-02
144	GO:0009832: plant-type cell wall biogenesis	3.03E-02
145	GO:0016117: carotenoid biosynthetic process	3.21E-02
146	GO:0009697: salicylic acid biosynthetic process	3.49E-02
147	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.98E-02
148	GO:0006974: cellular response to DNA damage stimulus	3.98E-02
149	GO:0000023: maltose metabolic process	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
3	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
4	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
5	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
6	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
7	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
8	GO:0003919: FMN adenylyltransferase activity	0.00E+00
9	GO:0005048: signal sequence binding	0.00E+00
10	GO:0046408: chlorophyll synthetase activity	0.00E+00
11	GO:0004812: aminoacyl-tRNA ligase activity	5.32E-05
12	GO:0004853: uroporphyrinogen decarboxylase activity	5.70E-05
13	GO:0000774: adenyl-nucleotide exchange factor activity	1.85E-04
14	GO:0004659: prenyltransferase activity	3.83E-04
15	GO:0004252: serine-type endopeptidase activity	4.74E-04
16	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.40E-03
17	GO:0008146: sulfotransferase activity	1.42E-03
18	GO:0004817: cysteine-tRNA ligase activity	1.42E-03
19	GO:0050377: UDP-glucose 4,6-dehydratase activity	1.42E-03
20	GO:0004824: lysine-tRNA ligase activity	1.42E-03
21	GO:0004827: proline-tRNA ligase activity	1.42E-03
22	GO:0004418: hydroxymethylbilane synthase activity	1.42E-03
23	GO:0016851: magnesium chelatase activity	1.42E-03
24	GO:0004823: leucine-tRNA ligase activity	1.42E-03
25	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.42E-03
26	GO:0003862: 3-isopropylmalate dehydrogenase activity	1.42E-03
27	GO:0004828: serine-tRNA ligase activity	1.42E-03
28	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.42E-03
29	GO:0004831: tyrosine-tRNA ligase activity	1.42E-03
30	GO:0010280: UDP-L-rhamnose synthase activity	1.42E-03
31	GO:0004362: glutathione-disulfide reductase activity	1.42E-03
32	GO:0008312: 7S RNA binding	1.88E-03
33	GO:0051087: chaperone binding	1.88E-03
34	GO:0031072: heat shock protein binding	2.35E-03
35	GO:0004392: heme oxygenase (decyclizing) activity	3.19E-03
36	GO:0051920: peroxiredoxin activity	3.19E-03
37	GO:0016630: protochlorophyllide reductase activity	3.19E-03
38	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	3.19E-03
39	GO:0046914: transition metal ion binding	3.78E-03
40	GO:0005525: GTP binding	3.81E-03
41	GO:0051082: unfolded protein binding	4.86E-03
42	GO:0003924: GTPase activity	5.12E-03
43	GO:0008460: dTDP-glucose 4,6-dehydratase activity	5.42E-03
44	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	5.42E-03
45	GO:0003959: NADPH dehydrogenase activity	5.42E-03
46	GO:0003735: structural constituent of ribosome	6.83E-03
47	GO:0000166: nucleotide binding	6.84E-03
48	GO:0003746: translation elongation factor activity	7.91E-03
49	GO:0004765: shikimate kinase activity	8.04E-03
50	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	8.04E-03
51	GO:0004550: nucleoside diphosphate kinase activity	8.04E-03
52	GO:0016209: antioxidant activity	8.04E-03
53	GO:0003913: DNA photolyase activity	8.04E-03
54	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	8.04E-03
55	GO:0070569: uridylyltransferase activity	8.04E-03
56	GO:0016831: carboxy-lyase activity	8.65E-03
57	GO:0016887: ATPase activity	8.73E-03
58	GO:0016868: intramolecular transferase activity, phosphotransferases	1.10E-02
59	GO:0016987: sigma factor activity	1.10E-02
60	GO:0008173: RNA methyltransferase activity	1.43E-02
61	GO:0004525: ribonuclease III activity	1.78E-02
62	GO:0008810: cellulase activity	1.78E-02
63	GO:0019843: rRNA binding	2.12E-02
64	GO:0043022: ribosome binding	2.17E-02
65	GO:0003723: RNA binding	2.52E-02
66	GO:0008266: poly(U) RNA binding	2.59E-02
67	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.03E-02
68	GO:0008236: serine-type peptidase activity	3.21E-02
69	GO:0000287: magnesium ion binding	3.23E-02
70	GO:0005507: copper ion binding	3.30E-02
71	GO:0005524: ATP binding	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0055035: plastid thylakoid membrane	0.00E+00
3	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
4	GO:0009507: chloroplast	3.49E-40
5	GO:0009570: chloroplast stroma	5.80E-31
6	GO:0009941: chloroplast envelope	9.85E-21
7	GO:0009535: chloroplast thylakoid membrane	1.64E-10
8	GO:0009579: thylakoid	2.00E-08
9	GO:0009532: plastid stroma	3.00E-06
10	GO:0009534: chloroplast thylakoid	8.41E-06
11	GO:0009840: chloroplastic endopeptidase Clp complex	1.76E-05
12	GO:0005840: ribosome	2.02E-04
13	GO:0048500: signal recognition particle	1.40E-03
14	GO:0080085: signal recognition particle, chloroplast targeting	1.42E-03
15	GO:0000311: plastid large ribosomal subunit	1.42E-03
16	GO:0009526: plastid envelope	1.42E-03
17	GO:0005960: glycine cleavage complex	1.42E-03
18	GO:0044445: cytosolic part	1.42E-03
19	GO:0030529: intracellular ribonucleoprotein complex	3.19E-03
20	GO:0005759: mitochondrial matrix	3.91E-03
21	GO:0009295: nucleoid	4.59E-03
22	GO:0010319: stromule	7.23E-03
23	GO:0048046: apoplast	1.05E-02
24	GO:0019013: viral nucleocapsid	1.42E-02
25	GO:0019898: extrinsic component of membrane	1.43E-02
26	GO:0009654: photosystem II oxygen evolving complex	1.78E-02
27	GO:0009706: chloroplast inner membrane	1.93E-02
28	GO:0005739: mitochondrion	2.19E-02
29	GO:0009536: plastid	2.76E-02
30	GO:0015934: large ribosomal subunit	3.71E-02
31	GO:0031977: thylakoid lumen	3.98E-02
32	GO:0005737: cytoplasm	4.86E-02