co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G099729

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
5	GO:0043953: protein transport by the Tat complex	0.00E+00
6	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
7	GO:0032543: mitochondrial translation	0.00E+00
8	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
9	GO:1901259: chloroplast rRNA processing	0.00E+00
10	GO:0090342: regulation of cell aging	0.00E+00
11	GO:0010028: xanthophyll cycle	0.00E+00
12	GO:0032544: plastid translation	0.00E+00
13	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
14	GO:0071486: cellular response to high light intensity	0.00E+00
15	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
16	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
17	GO:0043043: peptide biosynthetic process	0.00E+00
18	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
19	GO:0010027: thylakoid membrane organization	5.74E-27
20	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.80E-27
21	GO:0006364: rRNA processing	2.17E-14
22	GO:0009902: chloroplast relocation	5.38E-14
23	GO:0010207: photosystem II assembly	8.43E-14
24	GO:0015995: chlorophyll biosynthetic process	1.22E-13
25	GO:0042793: transcription from plastid promoter	1.60E-12
26	GO:0045036: protein targeting to chloroplast	4.55E-11
27	GO:0016226: iron-sulfur cluster assembly	6.55E-11
28	GO:0006655: phosphatidylglycerol biosynthetic process	1.10E-10
29	GO:0006098: pentose-phosphate shunt	1.39E-10
30	GO:0006412: translation	4.96E-09
31	GO:0009106: lipoate metabolic process	5.10E-08
32	GO:0006766: vitamin metabolic process	5.10E-08
33	GO:0009108: coenzyme biosynthetic process	5.10E-08
34	GO:0006546: glycine catabolic process	6.56E-08
35	GO:0009658: chloroplast organization	7.50E-08
36	GO:0045038: protein import into chloroplast thylakoid membrane	8.13E-08
37	GO:0016117: carotenoid biosynthetic process	2.02E-07
38	GO:0006636: unsaturated fatty acid biosynthetic process	3.93E-07
39	GO:0019748: secondary metabolic process	4.57E-07
40	GO:0000096: sulfur amino acid metabolic process	4.57E-07
41	GO:0006418: tRNA aminoacylation for protein translation	1.12E-06
42	GO:0009073: aromatic amino acid family biosynthetic process	2.47E-06
43	GO:0045893: positive regulation of transcription, DNA-templated	2.49E-06
44	GO:0006733: oxidoreduction coenzyme metabolic process	3.14E-06
45	GO:0035304: regulation of protein dephosphorylation	3.35E-06
46	GO:0009695: jasmonic acid biosynthetic process	4.73E-06
47	GO:0009117: nucleotide metabolic process	1.40E-05
48	GO:0030154: cell differentiation	2.15E-05
49	GO:0006569: tryptophan catabolic process	3.77E-05
50	GO:0009773: photosynthetic electron transport in photosystem I	5.37E-05
51	GO:0006779: porphyrin-containing compound biosynthetic process	6.25E-05
52	GO:0009225: nucleotide-sugar metabolic process	9.84E-05
53	GO:0044272: sulfur compound biosynthetic process	9.84E-05
54	GO:0051555: flavonol biosynthetic process	9.84E-05
55	GO:0010253: UDP-rhamnose biosynthetic process	9.84E-05
56	GO:0010192: mucilage biosynthetic process	9.84E-05
57	GO:0034660: ncRNA metabolic process	1.39E-04
58	GO:0006399: tRNA metabolic process	2.25E-04
59	GO:0019684: photosynthesis, light reaction	2.86E-04
60	GO:0045226: extracellular polysaccharide biosynthetic process	3.08E-04
61	GO:0009072: aromatic amino acid family metabolic process	3.35E-04
62	GO:0019344: cysteine biosynthetic process	3.48E-04
63	GO:0019761: glucosinolate biosynthetic process	4.06E-04
64	GO:0010103: stomatal complex morphogenesis	4.44E-04
65	GO:0009684: indoleacetic acid biosynthetic process	4.72E-04
66	GO:0019216: regulation of lipid metabolic process	6.23E-04
67	GO:0006353: DNA-templated transcription, termination	6.23E-04
68	GO:0010214: seed coat development	6.23E-04
69	GO:0006354: DNA-templated transcription, elongation	6.35E-04
70	GO:0048481: plant ovule development	7.04E-04
71	GO:0010315: auxin efflux	1.05E-03
72	GO:0031408: oxylipin biosynthetic process	1.33E-03
73	GO:0010228: vegetative to reproductive phase transition of meristem	1.56E-03
74	GO:0009306: protein secretion	1.59E-03
75	GO:0006200: obsolete ATP catabolic process	1.89E-03
76	GO:0008361: regulation of cell size	1.94E-03
77	GO:0006434: seryl-tRNA aminoacylation	1.94E-03
78	GO:0016050: vesicle organization	1.94E-03
79	GO:0018160: peptidyl-pyrromethane cofactor linkage	1.94E-03
80	GO:0006573: valine metabolic process	1.94E-03
81	GO:0006433: prolyl-tRNA aminoacylation	1.94E-03
82	GO:0006423: cysteinyl-tRNA aminoacylation	1.94E-03
83	GO:0009768: photosynthesis, light harvesting in photosystem I	1.94E-03
84	GO:0009069: serine family amino acid metabolic process	1.94E-03
85	GO:0071722: detoxification of arsenic-containing substance	1.94E-03
86	GO:0006430: lysyl-tRNA aminoacylation	1.94E-03
87	GO:0009443: pyridoxal 5'-phosphate salvage	1.94E-03
88	GO:0006429: leucyl-tRNA aminoacylation	1.94E-03
89	GO:0009965: leaf morphogenesis	2.07E-03
90	GO:0030003: cellular cation homeostasis	2.21E-03
91	GO:0015979: photosynthesis	2.72E-03
92	GO:0000023: maltose metabolic process	3.62E-03
93	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.85E-03
94	GO:0048653: anther development	4.42E-03
95	GO:0010380: regulation of chlorophyll biosynthetic process	4.42E-03
96	GO:0006218: uridine catabolic process	4.42E-03
97	GO:0019464: glycine decarboxylation via glycine cleavage system	4.42E-03
98	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.42E-03
99	GO:0006432: phenylalanyl-tRNA aminoacylation	4.42E-03
100	GO:0010236: plastoquinone biosynthetic process	4.42E-03
101	GO:0010109: regulation of photosynthesis	4.42E-03
102	GO:0042372: phylloquinone biosynthetic process	4.42E-03
103	GO:0009407: toxin catabolic process	4.87E-03
104	GO:0016556: mRNA modification	6.01E-03
105	GO:0008652: cellular amino acid biosynthetic process	6.35E-03
106	GO:0009793: embryo development ending in seed dormancy	7.29E-03
107	GO:0009765: photosynthesis, light harvesting	7.30E-03
108	GO:0042742: defense response to bacterium	7.49E-03
109	GO:0010731: protein glutathionylation	7.51E-03
110	GO:0043067: regulation of programmed cell death	7.51E-03
111	GO:0034599: cellular response to oxidative stress	7.51E-03
112	GO:0000304: response to singlet oxygen	7.51E-03
113	GO:0009247: glycolipid biosynthetic process	7.51E-03
114	GO:0006450: regulation of translational fidelity	7.51E-03
115	GO:0007186: G-protein coupled receptor signaling pathway	7.51E-03
116	GO:0043085: positive regulation of catalytic activity	8.15E-03
117	GO:0009735: response to cytokinin	8.82E-03
118	GO:0009767: photosynthetic electron transport chain	1.03E-02
119	GO:0071704: organic substance metabolic process	1.11E-02
120	GO:0006782: protoporphyrinogen IX biosynthetic process	1.11E-02
121	GO:0009833: plant-type primary cell wall biogenesis	1.11E-02
122	GO:0006165: nucleoside diphosphate phosphorylation	1.11E-02
123	GO:0006228: UTP biosynthetic process	1.11E-02
124	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.11E-02
125	GO:0051205: protein insertion into membrane	1.11E-02
126	GO:0045037: protein import into chloroplast stroma	1.11E-02
127	GO:0019375: galactolipid biosynthetic process	1.11E-02
128	GO:0006183: GTP biosynthetic process	1.11E-02
129	GO:0006241: CTP biosynthetic process	1.11E-02
130	GO:0007389: pattern specification process	1.11E-02
131	GO:0030259: lipid glycosylation	1.11E-02
132	GO:0006184: obsolete GTP catabolic process	1.30E-02
133	GO:0042545: cell wall modification	1.38E-02
134	GO:0060416: response to growth hormone	1.53E-02
135	GO:0009772: photosynthetic electron transport in photosystem II	1.53E-02
136	GO:0009813: flavonoid biosynthetic process	1.53E-02
137	GO:0015994: chlorophyll metabolic process	1.53E-02
138	GO:0009308: amine metabolic process	1.53E-02
139	GO:0070838: divalent metal ion transport	1.53E-02
140	GO:0006631: fatty acid metabolic process	1.58E-02
141	GO:0010155: regulation of proton transport	1.79E-02
142	GO:0018298: protein-chromophore linkage	1.79E-02
143	GO:0009913: epidermal cell differentiation	1.98E-02
144	GO:0048229: gametophyte development	1.98E-02
145	GO:0007005: mitochondrion organization	1.98E-02
146	GO:0019252: starch biosynthetic process	1.99E-02
147	GO:0006414: translational elongation	2.15E-02
148	GO:0009409: response to cold	2.22E-02
149	GO:0046777: protein autophosphorylation	2.25E-02
150	GO:0006801: superoxide metabolic process	2.48E-02
151	GO:0009926: auxin polar transport	2.48E-02
152	GO:0010205: photoinhibition	2.48E-02
153	GO:0009814: defense response, incompatible interaction	2.48E-02
154	GO:0009704: de-etiolation	2.48E-02
155	GO:0009411: response to UV	2.48E-02
156	GO:0010583: response to cyclopentenone	2.48E-02
157	GO:0033014: tetrapyrrole biosynthetic process	2.48E-02
158	GO:0010206: photosystem II repair	2.48E-02
159	GO:0015693: magnesium ion transport	3.02E-02
160	GO:0043039: tRNA aminoacylation	3.02E-02
161	GO:0030245: cellulose catabolic process	3.02E-02
162	GO:0045087: innate immune response	3.60E-02
163	GO:0009585: red, far-red light phototransduction	3.60E-02
164	GO:0040007: growth	3.60E-02
165	GO:0010015: root morphogenesis	3.60E-02
166	GO:0009832: plant-type cell wall biogenesis	4.22E-02
167	GO:0010466: negative regulation of peptidase activity	4.22E-02
168	GO:0006662: glycerol ether metabolic process	4.71E-02
169	GO:0048527: lateral root development	4.87E-02
170	GO:0009697: salicylic acid biosynthetic process	4.87E-02
171	GO:0045454: cell redox homeostasis	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0010280: UDP-L-rhamnose synthase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
5	GO:0050377: UDP-glucose 4,6-dehydratase activity	0.00E+00
6	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
7	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
8	GO:0031409: pigment binding	0.00E+00
9	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
10	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
11	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
12	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
13	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
14	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
15	GO:0005048: signal sequence binding	0.00E+00
16	GO:0005504: fatty acid binding	0.00E+00
17	GO:0003735: structural constituent of ribosome	2.49E-07
18	GO:0004812: aminoacyl-tRNA ligase activity	1.83E-06
19	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	3.08E-04
20	GO:0008460: dTDP-glucose 4,6-dehydratase activity	3.08E-04
21	GO:0004659: prenyltransferase activity	6.23E-04
22	GO:0004765: shikimate kinase activity	6.23E-04
23	GO:0016209: antioxidant activity	6.23E-04
24	GO:0019843: rRNA binding	1.07E-03
25	GO:0035250: UDP-galactosyltransferase activity	1.94E-03
26	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	1.94E-03
27	GO:0070402: NADPH binding	1.94E-03
28	GO:0008194: UDP-glycosyltransferase activity	1.94E-03
29	GO:0004817: cysteine-tRNA ligase activity	1.94E-03
30	GO:0004824: lysine-tRNA ligase activity	1.94E-03
31	GO:0034256: chlorophyll(ide) b reductase activity	1.94E-03
32	GO:0004827: proline-tRNA ligase activity	1.94E-03
33	GO:0004418: hydroxymethylbilane synthase activity	1.94E-03
34	GO:0004828: serine-tRNA ligase activity	1.94E-03
35	GO:0016851: magnesium chelatase activity	1.94E-03
36	GO:0004823: leucine-tRNA ligase activity	1.94E-03
37	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.94E-03
38	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	1.94E-03
39	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.94E-03
40	GO:0004831: tyrosine-tRNA ligase activity	1.94E-03
41	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	2.21E-03
42	GO:0008312: 7S RNA binding	2.95E-03
43	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	4.42E-03
44	GO:0004826: phenylalanine-tRNA ligase activity	4.42E-03
45	GO:0004462: lactoylglutathione lyase activity	4.42E-03
46	GO:0004853: uroporphyrinogen decarboxylase activity	4.42E-03
47	GO:0045485: omega-6 fatty acid desaturase activity	4.42E-03
48	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	4.42E-03
49	GO:0045437: uridine nucleosidase activity	4.42E-03
50	GO:0045430: chalcone isomerase activity	4.42E-03
51	GO:0047622: adenosine nucleosidase activity	4.42E-03
52	GO:0051920: peroxiredoxin activity	4.42E-03
53	GO:0047724: inosine nucleosidase activity	4.42E-03
54	GO:0016887: ATPase activity	4.70E-03
55	GO:0000049: tRNA binding	4.87E-03
56	GO:0004252: serine-type endopeptidase activity	5.05E-03
57	GO:0033897: ribonuclease T2 activity	7.51E-03
58	GO:0000774: adenyl-nucleotide exchange factor activity	7.51E-03
59	GO:0016872: intramolecular lyase activity	7.51E-03
60	GO:0008236: serine-type peptidase activity	1.08E-02
61	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	1.11E-02
62	GO:0070569: uridylyltransferase activity	1.11E-02
63	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.11E-02
64	GO:0004550: nucleoside diphosphate kinase activity	1.11E-02
65	GO:0003913: DNA photolyase activity	1.11E-02
66	GO:0015035: protein disulfide oxidoreductase activity	1.27E-02
67	GO:0003746: translation elongation factor activity	1.43E-02
68	GO:0016868: intramolecular transferase activity, phosphotransferases	1.53E-02
69	GO:0016987: sigma factor activity	1.53E-02
70	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.53E-02
71	GO:0016168: chlorophyll binding	1.79E-02
72	GO:0008173: RNA methyltransferase activity	1.98E-02
73	GO:0008810: cellulase activity	2.48E-02
74	GO:0031072: heat shock protein binding	2.51E-02
75	GO:0008565: protein transporter activity	2.51E-02
76	GO:0004784: superoxide dismutase activity	3.02E-02
77	GO:0043022: ribosome binding	3.02E-02
78	GO:0004869: cysteine-type endopeptidase inhibitor activity	3.02E-02
79	GO:0051087: chaperone binding	3.02E-02
80	GO:0009055: electron carrier activity	3.11E-02
81	GO:0051082: unfolded protein binding	3.58E-02
82	GO:0008266: poly(U) RNA binding	3.60E-02
83	GO:0003723: RNA binding	3.68E-02
84	GO:0030414: peptidase inhibitor activity	4.22E-02
85	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.22E-02
86	GO:0015095: magnesium ion transmembrane transporter activity	4.22E-02
87	GO:0046873: metal ion transmembrane transporter activity	4.22E-02
88	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.22E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
3	GO:0009507: chloroplast	1.22E-52
4	GO:0009570: chloroplast stroma	7.81E-42
5	GO:0009941: chloroplast envelope	6.89E-26
6	GO:0009535: chloroplast thylakoid membrane	4.42E-13
7	GO:0009579: thylakoid	1.39E-11
8	GO:0005840: ribosome	2.49E-10
9	GO:0009534: chloroplast thylakoid	1.19E-09
10	GO:0009543: chloroplast thylakoid lumen	6.70E-06
11	GO:0030529: intracellular ribonucleoprotein complex	2.24E-05
12	GO:0009840: chloroplastic endopeptidase Clp complex	3.77E-05
13	GO:0009295: nucleoid	6.25E-05
14	GO:0009532: plastid stroma	2.25E-04
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.59E-03
16	GO:0005960: glycine cleavage complex	1.94E-03
17	GO:0044445: cytosolic part	1.94E-03
18	GO:0080085: signal recognition particle, chloroplast targeting	1.94E-03
19	GO:0009528: plastid inner membrane	1.94E-03
20	GO:0000311: plastid large ribosomal subunit	1.94E-03
21	GO:0009527: plastid outer membrane	1.94E-03
22	GO:0048500: signal recognition particle	2.21E-03
23	GO:0010319: stromule	2.61E-03
24	GO:0031977: thylakoid lumen	2.91E-03
25	GO:0005622: intracellular	5.85E-03
26	GO:0055028: cortical microtubule	7.51E-03
27	GO:0009523: photosystem II	8.82E-03
28	GO:0042651: thylakoid membrane	1.03E-02
29	GO:0015934: large ribosomal subunit	1.30E-02
30	GO:0009508: plastid chromosome	1.53E-02
31	GO:0031225: anchored component of membrane	1.98E-02
32	GO:0019013: viral nucleocapsid	2.25E-02
33	GO:0009536: plastid	2.70E-02
34	GO:0009706: chloroplast inner membrane	3.07E-02