co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G098290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
2	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
3	GO:0035436: triose phosphate transmembrane transport	0.00E+00
4	GO:0015714: phosphoenolpyruvate transport	0.00E+00
5	GO:0071486: cellular response to high light intensity	0.00E+00
6	GO:0051188: cofactor biosynthetic process	0.00E+00
7	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
8	GO:0042550: photosystem I stabilization	0.00E+00
9	GO:0009234: menaquinone biosynthetic process	0.00E+00
10	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.70E-11
11	GO:0015979: photosynthesis	6.59E-11
12	GO:0010207: photosystem II assembly	9.94E-10
13	GO:0006412: translation	8.81E-09
14	GO:0006364: rRNA processing	1.32E-08
15	GO:0010027: thylakoid membrane organization	9.68E-08
16	GO:0006098: pentose-phosphate shunt	2.76E-07
17	GO:0015995: chlorophyll biosynthetic process	2.79E-06
18	GO:0009767: photosynthetic electron transport chain	4.18E-06
19	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.25E-05
20	GO:0032544: plastid translation	1.25E-05
21	GO:0009902: chloroplast relocation	6.57E-05
22	GO:0045036: protein targeting to chloroplast	9.78E-05
23	GO:0009637: response to blue light	1.24E-04
24	GO:0010114: response to red light	1.63E-04
25	GO:0070838: divalent metal ion transport	1.74E-04
26	GO:0010218: response to far red light	2.11E-04
27	GO:0009416: response to light stimulus	2.13E-04
28	GO:0019684: photosynthesis, light reaction	2.43E-04
29	GO:0010103: stomatal complex morphogenesis	3.47E-04
30	GO:0030003: cellular cation homeostasis	3.97E-04
31	GO:0010206: photosystem II repair	3.97E-04
32	GO:0006573: valine metabolic process	6.06E-04
33	GO:0009768: photosynthesis, light harvesting in photosystem I	6.06E-04
34	GO:0009069: serine family amino acid metabolic process	6.06E-04
35	GO:0019253: reductive pentose-phosphate cycle	6.06E-04
36	GO:0006434: seryl-tRNA aminoacylation	6.06E-04
37	GO:0015977: carbon fixation	7.10E-04
38	GO:0016556: mRNA modification	1.12E-03
39	GO:0016117: carotenoid biosynthetic process	1.25E-03
40	GO:0009765: photosynthesis, light harvesting	1.36E-03
41	GO:0006875: cellular metal ion homeostasis	1.40E-03
42	GO:0010236: plastoquinone biosynthetic process	1.40E-03
43	GO:0042372: phylloquinone biosynthetic process	1.40E-03
44	GO:0042793: transcription from plastid promoter	1.90E-03
45	GO:0034599: cellular response to oxidative stress	2.33E-03
46	GO:0016024: CDP-diacylglycerol biosynthetic process	2.33E-03
47	GO:0009657: plastid organization	2.87E-03
48	GO:0010155: regulation of proton transport	3.26E-03
49	GO:0018298: protein-chromophore linkage	3.26E-03
50	GO:0045037: protein import into chloroplast stroma	3.42E-03
51	GO:0050821: protein stabilization	3.42E-03
52	GO:0022900: electron transport chain	3.56E-03
53	GO:0043085: positive regulation of catalytic activity	3.81E-03
54	GO:0009773: photosynthetic electron transport in photosystem I	4.13E-03
55	GO:0050790: regulation of catalytic activity	4.67E-03
56	GO:0034755: iron ion transmembrane transport	4.67E-03
57	GO:0010189: vitamin E biosynthetic process	4.67E-03
58	GO:0000096: sulfur amino acid metabolic process	4.67E-03
59	GO:0006796: phosphate-containing compound metabolic process	4.67E-03
60	GO:0009088: threonine biosynthetic process	4.67E-03
61	GO:0000105: histidine biosynthetic process	6.03E-03
62	GO:0007005: mitochondrion organization	6.03E-03
63	GO:0009853: photorespiration	6.17E-03
64	GO:0000413: protein peptidyl-prolyl isomerization	6.76E-03
65	GO:0009411: response to UV	7.53E-03
66	GO:0009814: defense response, incompatible interaction	7.53E-03
67	GO:0006801: superoxide metabolic process	7.53E-03
68	GO:0009735: response to cytokinin	8.01E-03
69	GO:0006662: glycerol ether metabolic process	8.68E-03
70	GO:0008295: spermidine biosynthetic process	9.14E-03
71	GO:0019761: glucosinolate biosynthetic process	1.01E-02
72	GO:0048868: pollen tube development	1.09E-02
73	GO:0080167: response to karrikin	1.17E-02
74	GO:0016226: iron-sulfur cluster assembly	1.17E-02
75	GO:0009407: toxin catabolic process	1.27E-02
76	GO:0048481: plant ovule development	1.33E-02
77	GO:0006418: tRNA aminoacylation for protein translation	1.42E-02
78	GO:0009658: chloroplast organization	1.42E-02
79	GO:0009697: salicylic acid biosynthetic process	1.46E-02
80	GO:0006354: DNA-templated transcription, elongation	1.46E-02
81	GO:0009409: response to cold	1.54E-02
82	GO:0008652: cellular amino acid biosynthetic process	1.91E-02
83	GO:0010228: vegetative to reproductive phase transition of meristem	2.01E-02
84	GO:0006636: unsaturated fatty acid biosynthetic process	2.33E-02
85	GO:0042545: cell wall modification	2.57E-02
86	GO:0030154: cell differentiation	2.82E-02
87	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.08E-02
88	GO:0035304: regulation of protein dephosphorylation	3.62E-02
89	GO:0046777: protein autophosphorylation	3.62E-02
90	GO:0009817: defense response to fungus, incompatible interaction	3.90E-02

Rank	GO Term	Adjusted P value
1	GO:0004802: transketolase activity	0.00E+00
2	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
3	GO:0004399: histidinol dehydrogenase activity	0.00E+00
4	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
5	GO:0031409: pigment binding	0.00E+00
6	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
7	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
8	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
9	GO:0045550: geranylgeranyl reductase activity	0.00E+00
10	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
11	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
12	GO:0003735: structural constituent of ribosome	9.20E-08
13	GO:0016168: chlorophyll binding	1.44E-05
14	GO:0016984: ribulose-bisphosphate carboxylase activity	9.78E-05
15	GO:0051537: 2 iron, 2 sulfur cluster binding	4.74E-04
16	GO:0004795: threonine synthase activity	6.06E-04
17	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	6.06E-04
18	GO:0004618: phosphoglycerate kinase activity	6.06E-04
19	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.06E-04
20	GO:0015088: copper uptake transmembrane transporter activity	6.06E-04
21	GO:0004828: serine-tRNA ligase activity	6.06E-04
22	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	6.06E-04
23	GO:0019843: rRNA binding	7.09E-04
24	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.03E-04
25	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.40E-03
26	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.40E-03
27	GO:0004605: phosphatidate cytidylyltransferase activity	1.40E-03
28	GO:0009055: electron carrier activity	1.89E-03
29	GO:0033897: ribonuclease T2 activity	2.33E-03
30	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.42E-03
31	GO:0071949: FAD binding	3.42E-03
32	GO:0004332: fructose-bisphosphate aldolase activity	3.42E-03
33	GO:0030234: enzyme regulator activity	4.67E-03
34	GO:0005381: iron ion transmembrane transporter activity	4.67E-03
35	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.67E-03
36	GO:0051536: iron-sulfur cluster binding	6.53E-03
37	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.01E-03
38	GO:0004784: superoxide dismutase activity	9.14E-03
39	GO:0004427: inorganic diphosphatase activity	1.09E-02
40	GO:0042578: phosphoric ester hydrolase activity	1.09E-02
41	GO:0004812: aminoacyl-tRNA ligase activity	1.61E-02
42	GO:0004497: monooxygenase activity	1.63E-02
43	GO:0043531: ADP binding	1.66E-02
44	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.01E-02
45	GO:0016829: lyase activity	2.59E-02
46	GO:0015035: protein disulfide oxidoreductase activity	2.98E-02
47	GO:0051287: NAD binding	3.25E-02

Rank	GO Term	Adjusted P value
1	GO:0009782: photosystem I antenna complex	0.00E+00
2	GO:0009512: cytochrome b6f complex	0.00E+00
3	GO:0009507: chloroplast	4.64E-34
4	GO:0009570: chloroplast stroma	4.56E-25
5	GO:0009941: chloroplast envelope	3.90E-24
6	GO:0009579: thylakoid	4.15E-17
7	GO:0009535: chloroplast thylakoid membrane	3.15E-14
8	GO:0009543: chloroplast thylakoid lumen	1.22E-09
9	GO:0005840: ribosome	9.26E-09
10	GO:0031977: thylakoid lumen	2.20E-08
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.86E-06
12	GO:0009523: photosystem II	4.90E-06
13	GO:0009522: photosystem I	2.37E-05
14	GO:0009534: chloroplast thylakoid	4.36E-05
15	GO:0030529: intracellular ribonucleoprotein complex	6.18E-05
16	GO:0019898: extrinsic component of membrane	2.75E-04
17	GO:0009654: photosystem II oxygen evolving complex	3.97E-04
18	GO:0030093: chloroplast photosystem I	6.06E-04
19	GO:0009295: nucleoid	1.36E-03
20	GO:0015935: small ribosomal subunit	1.65E-03
21	GO:0048046: apoplast	1.84E-03
22	GO:0042651: thylakoid membrane	1.90E-03
23	GO:0009508: plastid chromosome	4.67E-03
24	GO:0009536: plastid	8.89E-03
25	GO:0010319: stromule	1.09E-02
26	GO:0005622: intracellular	1.38E-02
27	GO:0016020: membrane	1.74E-02
28	GO:0010287: plastoglobule	1.91E-02
29	GO:0009706: chloroplast inner membrane	4.48E-02