co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G094831

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010239: chloroplast mRNA processing	0.00E+00
2	GO:0046506: sulfolipid biosynthetic process	0.00E+00
3	GO:0010117: photoprotection	0.00E+00
4	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
5	GO:0042780: tRNA 3'-end processing	0.00E+00
6	GO:1900865: chloroplast RNA modification	0.00E+00
7	GO:0010157: response to chlorate	0.00E+00
8	GO:0043686: co-translational protein modification	0.00E+00
9	GO:0006591: ornithine metabolic process	0.00E+00
10	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
11	GO:0043953: protein transport by the Tat complex	0.00E+00
12	GO:0009658: chloroplast organization	4.49E-11
13	GO:0006457: protein folding	6.45E-10
14	GO:1901671: positive regulation of superoxide dismutase activity	1.25E-05
15	GO:0006399: tRNA metabolic process	1.58E-05
16	GO:0045036: protein targeting to chloroplast	9.78E-05
17	GO:0010468: regulation of gene expression	1.74E-04
18	GO:0006364: rRNA processing	1.93E-04
19	GO:0009306: protein secretion	2.75E-04
20	GO:0010206: photosystem II repair	3.97E-04
21	GO:0018160: peptidyl-pyrromethane cofactor linkage	6.06E-04
22	GO:0032543: mitochondrial translation	6.06E-04
23	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	6.06E-04
24	GO:0016556: mRNA modification	1.12E-03
25	GO:0030308: negative regulation of cell growth	1.40E-03
26	GO:0019481: L-alanine catabolic process, by transamination	1.40E-03
27	GO:0009299: mRNA transcription	1.40E-03
28	GO:0009102: biotin biosynthetic process	1.40E-03
29	GO:0009642: response to light intensity	1.40E-03
30	GO:0010027: thylakoid membrane organization	1.41E-03
31	GO:0042793: transcription from plastid promoter	1.90E-03
32	GO:0008299: isoprenoid biosynthetic process	2.20E-03
33	GO:0009247: glycolipid biosynthetic process	2.33E-03
34	GO:0015867: ATP transport	2.33E-03
35	GO:0006450: regulation of translational fidelity	2.33E-03
36	GO:0051085: chaperone mediated protein folding requiring cofactor	2.33E-03
37	GO:0016075: rRNA catabolic process	2.33E-03
38	GO:0045037: protein import into chloroplast stroma	3.42E-03
39	GO:0019375: galactolipid biosynthetic process	3.42E-03
40	GO:0045038: protein import into chloroplast thylakoid membrane	3.42E-03
41	GO:0000373: Group II intron splicing	3.42E-03
42	GO:0042026: protein refolding	3.42E-03
43	GO:0009627: systemic acquired resistance	3.69E-03
44	GO:0045893: positive regulation of transcription, DNA-templated	5.84E-03
45	GO:0006749: glutathione metabolic process	6.03E-03
46	GO:0031347: regulation of defense response	6.03E-03
47	GO:0009902: chloroplast relocation	6.76E-03
48	GO:0006520: cellular amino acid metabolic process	6.76E-03
49	GO:0032880: regulation of protein localization	7.53E-03
50	GO:0009704: de-etiolation	7.53E-03
51	GO:0033014: tetrapyrrole biosynthetic process	7.53E-03
52	GO:0006189: 'de novo' IMP biosynthetic process	7.53E-03
53	GO:0034660: ncRNA metabolic process	7.53E-03
54	GO:0019538: protein metabolic process	7.53E-03
55	GO:0051604: protein maturation	9.14E-03
56	GO:0045087: innate immune response	1.09E-02
57	GO:0001666: response to hypoxia	1.09E-02
58	GO:0009407: toxin catabolic process	1.27E-02
59	GO:0000302: response to reactive oxygen species	1.27E-02
60	GO:0006184: obsolete GTP catabolic process	1.51E-02
61	GO:0009409: response to cold	1.54E-02
62	GO:0048316: seed development	2.10E-02
63	GO:0006655: phosphatidylglycerol biosynthetic process	2.10E-02
64	GO:0051607: defense response to virus	2.10E-02
65	GO:0010207: photosystem II assembly	2.72E-02
66	GO:0009408: response to heat	2.76E-02
67	GO:0009657: plastid organization	2.82E-02
68	GO:0044267: cellular protein metabolic process	3.08E-02
69	GO:0010267: production of ta-siRNAs involved in RNA interference	3.08E-02
70	GO:0016036: cellular response to phosphate starvation	3.08E-02
71	GO:0035196: production of miRNAs involved in gene silencing by miRNA	3.08E-02
72	GO:0008219: cell death	3.08E-02
73	GO:0009058: biosynthetic process	3.22E-02
74	GO:0044237: cellular metabolic process	3.25E-02
75	GO:0006396: RNA processing	3.25E-02
76	GO:0006950: response to stress	3.32E-02
77	GO:0010200: response to chitin	3.34E-02
78	GO:0035304: regulation of protein dephosphorylation	3.62E-02
79	GO:0009416: response to light stimulus	3.84E-02
80	GO:0006869: lipid transport	3.90E-02
81	GO:0009853: photorespiration	4.79E-02
82	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
2	GO:0042586: peptide deformylase activity	0.00E+00
3	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
4	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
5	GO:0004076: biotin synthase activity	0.00E+00
6	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
7	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
8	GO:0016743: carboxyl- or carbamoyltransferase activity	4.41E-05
9	GO:0000774: adenyl-nucleotide exchange factor activity	4.41E-05
10	GO:0051082: unfolded protein binding	7.20E-05
11	GO:0004252: serine-type endopeptidase activity	2.13E-04
12	GO:0016817: hydrolase activity, acting on acid anhydrides	2.75E-04
13	GO:0004525: ribonuclease III activity	3.97E-04
14	GO:0051087: chaperone binding	5.42E-04
15	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	6.06E-04
16	GO:0004418: hydroxymethylbilane synthase activity	6.06E-04
17	GO:0004362: glutathione-disulfide reductase activity	6.06E-04
18	GO:0008146: sulfotransferase activity	6.06E-04
19	GO:0046914: transition metal ion binding	1.12E-03
20	GO:0005347: ATP transmembrane transporter activity	1.40E-03
21	GO:0005496: steroid binding	1.40E-03
22	GO:0016630: protochlorophyllide reductase activity	1.40E-03
23	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.40E-03
24	GO:0047134: protein-disulfide reductase activity	1.40E-03
25	GO:0003959: NADPH dehydrogenase activity	2.33E-03
26	GO:0005507: copper ion binding	2.98E-03
27	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	3.42E-03
28	GO:0042803: protein homodimerization activity	3.81E-03
29	GO:0008565: protein transporter activity	4.61E-03
30	GO:0005525: GTP binding	5.99E-03
31	GO:0016597: amino acid binding	6.17E-03
32	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	7.53E-03
33	GO:0008266: poly(U) RNA binding	1.09E-02
34	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.27E-02
35	GO:0003690: double-stranded DNA binding	1.66E-02
36	GO:0031072: heat shock protein binding	3.90E-02

Rank	GO Term	Adjusted P value
1	GO:0042646: plastid nucleoid	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0055035: plastid thylakoid membrane	0.00E+00
4	GO:0009513: etioplast	0.00E+00
5	GO:0009526: plastid envelope	0.00E+00
6	GO:0009507: chloroplast	2.67E-13
7	GO:0009941: chloroplast envelope	4.56E-11
8	GO:0009570: chloroplast stroma	6.75E-11
9	GO:0009535: chloroplast thylakoid membrane	6.80E-08
10	GO:0009532: plastid stroma	1.58E-05
11	GO:0009579: thylakoid	7.16E-05
12	GO:0009509: chromoplast	6.06E-04
13	GO:0019867: outer membrane	6.06E-04
14	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	6.06E-04
15	GO:0009536: plastid	6.36E-04
16	GO:0005759: mitochondrial matrix	8.03E-04
17	GO:0031351: integral component of plastid membrane	1.40E-03
18	GO:0009533: chloroplast stromal thylakoid	1.40E-03
19	GO:0005739: mitochondrion	2.86E-03
20	GO:0009707: chloroplast outer membrane	4.67E-03
21	GO:0009840: chloroplastic endopeptidase Clp complex	4.67E-03
22	GO:0019898: extrinsic component of membrane	6.03E-03
23	GO:0009654: photosystem II oxygen evolving complex	7.53E-03
24	GO:0009501: amyloplast	7.53E-03
25	GO:0010319: stromule	1.09E-02
26	GO:0009295: nucleoid	1.66E-02
27	GO:0048046: apoplast	1.95E-02
28	GO:0042651: thylakoid membrane	2.10E-02
29	GO:0009706: chloroplast inner membrane	4.48E-02