co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G093217

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043137: DNA replication, removal of RNA primer	0.00E+00
2	GO:0006233: dTDP biosynthetic process	0.00E+00
3	GO:0018022: peptidyl-lysine methylation	0.00E+00
4	GO:0010165: response to X-ray	0.00E+00
5	GO:0006260: DNA replication	1.92E-09
6	GO:0006281: DNA repair	4.09E-07
7	GO:0010389: regulation of G2/M transition of mitotic cell cycle	4.04E-06
8	GO:0051567: histone H3-K9 methylation	5.08E-06
9	GO:0009909: regulation of flower development	4.64E-05
10	GO:0007049: cell cycle	6.24E-05
11	GO:0048449: floral organ formation	6.28E-05
12	GO:0016572: histone phosphorylation	8.53E-05
13	GO:0006302: double-strand break repair	8.53E-05
14	GO:0006342: chromatin silencing	8.53E-05
15	GO:0006259: DNA metabolic process	1.43E-04
16	GO:1990426: mitotic recombination-dependent replication fork processing	1.49E-04
17	GO:0010216: maintenance of DNA methylation	1.49E-04
18	GO:0010425: DNA methylation on cytosine within a CNG sequence	1.49E-04
19	GO:0006306: DNA methylation	1.66E-04
20	GO:0016571: histone methylation	2.16E-04
21	GO:0008283: cell proliferation	2.33E-04
22	GO:0051301: cell division	2.33E-04
23	GO:0007018: microtubule-based movement	2.74E-04
24	GO:0042547: cell wall modification involved in multidimensional cell growth	3.66E-04
25	GO:0010069: zygote asymmetric cytokinesis in embryo sac	3.66E-04
26	GO:0009755: hormone-mediated signaling pathway	3.66E-04
27	GO:0043987: histone H3-S10 phosphorylation	3.66E-04
28	GO:0045814: negative regulation of gene expression, epigenetic	3.66E-04
29	GO:0000724: double-strand break repair via homologous recombination	4.09E-04
30	GO:0006310: DNA recombination	4.68E-04
31	GO:0007094: mitotic spindle assembly checkpoint	6.27E-04
32	GO:0022904: respiratory electron transport chain	6.27E-04
33	GO:0090116: C-5 methylation of cytosine	9.31E-04
34	GO:0006275: regulation of DNA replication	9.88E-04
35	GO:0006265: DNA topological change	1.27E-03
36	GO:0007267: cell-cell signaling	1.63E-03
37	GO:0051276: chromosome organization	1.63E-03
38	GO:0009934: regulation of meristem structural organization	2.01E-03
39	GO:0030245: cellulose catabolic process	2.40E-03
40	GO:0010074: maintenance of meristem identity	2.40E-03
41	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.83E-03
42	GO:0009955: adaxial/abaxial pattern specification	3.31E-03
43	GO:0016570: histone modification	3.81E-03
44	GO:0048453: sepal formation	3.81E-03
45	GO:0010048: vernalization response	3.81E-03
46	GO:0006284: base-excision repair	3.81E-03
47	GO:0009616: virus induced gene silencing	3.81E-03
48	GO:0006974: cellular response to DNA damage stimulus	4.34E-03
49	GO:0007020: microtubule nucleation	4.34E-03
50	GO:0019915: lipid storage	4.34E-03
51	GO:0048451: petal formation	4.34E-03
52	GO:0010332: response to gamma radiation	4.87E-03
53	GO:0031048: chromatin silencing by small RNA	5.43E-03
54	GO:0006406: mRNA export from nucleus	5.43E-03
55	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	6.02E-03
56	GO:0009294: DNA mediated transformation	6.02E-03
57	GO:0010162: seed dormancy process	6.02E-03
58	GO:0050826: response to freezing	6.63E-03
59	GO:0007062: sister chromatid cohesion	6.63E-03
60	GO:0006261: DNA-dependent DNA replication	6.63E-03
61	GO:0034968: histone lysine methylation	7.26E-03
62	GO:0010267: production of ta-siRNAs involved in RNA interference	7.90E-03
63	GO:0035196: production of miRNAs involved in gene silencing by miRNA	7.90E-03
64	GO:0009966: regulation of signal transduction	7.90E-03
65	GO:0010182: sugar mediated signaling pathway	9.26E-03
66	GO:0006346: methylation-dependent chromatin silencing	9.97E-03
67	GO:0009845: seed germination	1.14E-02
68	GO:0009933: meristem structural organization	1.30E-02
69	GO:0009560: embryo sac egg cell differentiation	1.38E-02
70	GO:0016579: protein deubiquitination	1.55E-02
71	GO:0048366: leaf development	1.63E-02
72	GO:0051726: regulation of cell cycle	1.72E-02
73	GO:0048481: plant ovule development	2.08E-02
74	GO:0009640: photomorphogenesis	2.18E-02
75	GO:0032259: methylation	2.67E-02
76	GO:0010228: vegetative to reproductive phase transition of meristem	2.78E-02
77	GO:0009965: leaf morphogenesis	3.11E-02
78	GO:0009555: pollen development	3.44E-02
79	GO:0045893: positive regulation of transcription, DNA-templated	3.79E-02

Rank	GO Term	Adjusted P value
1	GO:0008409: 5'-3' exonuclease activity	0.00E+00
2	GO:0046974: histone methyltransferase activity (H3-K9 specific)	0.00E+00
3	GO:0004798: thymidylate kinase activity	0.00E+00
4	GO:0008017: microtubule binding	3.95E-05
5	GO:0008327: methyl-CpG binding	1.49E-04
6	GO:0019905: syntaxin binding	1.49E-04
7	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.49E-04
8	GO:0010428: methyl-CpNpG binding	1.49E-04
9	GO:0010429: methyl-CpNpN binding	1.49E-04
10	GO:0017108: 5'-flap endonuclease activity	1.49E-04
11	GO:0000150: recombinase activity	1.49E-04
12	GO:0003916: DNA topoisomerase activity	1.49E-04
13	GO:0003777: microtubule motor activity	2.74E-04
14	GO:0008569: ATP-dependent microtubule motor activity, minus-end-directed	3.66E-04
15	GO:0035175: histone kinase activity (H3-S10 specific)	3.66E-04
16	GO:0010385: double-stranded methylated DNA binding	6.27E-04
17	GO:0004748: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	6.27E-04
18	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	9.31E-04
19	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	9.31E-04
20	GO:0003677: DNA binding	1.05E-03
21	GO:0003713: transcription coactivator activity	1.63E-03
22	GO:0005524: ATP binding	1.72E-03
23	GO:0008810: cellulase activity	2.01E-03
24	GO:0008094: DNA-dependent ATPase activity	2.40E-03
25	GO:0003887: DNA-directed DNA polymerase activity	2.40E-03
26	GO:0004518: nuclease activity	3.81E-03
27	GO:0003684: damaged DNA binding	3.81E-03
28	GO:0003697: single-stranded DNA binding	4.34E-03
29	GO:0003690: double-stranded DNA binding	4.34E-03
30	GO:0018024: histone-lysine N-methyltransferase activity	4.34E-03
31	GO:0004519: endonuclease activity	4.87E-03
32	GO:0004527: exonuclease activity	6.02E-03
33	GO:0019901: protein kinase binding	6.63E-03
34	GO:0016651: oxidoreductase activity, acting on NAD(P)H	6.63E-03
35	GO:0042393: histone binding	1.07E-02
36	GO:0017111: nucleoside-triphosphatase activity	1.81E-02
37	GO:0008168: methyltransferase activity	3.22E-02
38	GO:0004721: phosphoprotein phosphatase activity	3.33E-02
39	GO:0016788: hydrolase activity, acting on ester bonds	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	0.00E+00
2	GO:0005694: chromosome	1.99E-04
3	GO:0005871: kinesin complex	2.53E-04
4	GO:0005654: nucleoplasm	4.68E-04
5	GO:0005971: ribonucleoside-diphosphate reductase complex	6.27E-04
6	GO:0000808: origin recognition complex	6.27E-04
7	GO:0030915: Smc5-Smc6 complex	9.31E-04
8	GO:0000776: kinetochore	9.31E-04
9	GO:0005874: microtubule	9.77E-04
10	GO:0005875: microtubule associated complex	1.48E-03
11	GO:0005634: nucleus	3.24E-03
12	GO:0005730: nucleolus	7.17E-03
13	GO:0031966: mitochondrial membrane	7.90E-03
14	GO:0005819: spindle	9.97E-03
15	GO:0005635: nuclear envelope	1.14E-02
16	GO:0009524: phragmoplast	1.55E-02
17	GO:0045271: respiratory chain complex I	2.47E-02
18	GO:0005743: mitochondrial inner membrane	2.99E-02