co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G091245

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043953: protein transport by the Tat complex	0.00E+00
2	GO:0046506: sulfolipid biosynthetic process	0.00E+00
3	GO:1901259: chloroplast rRNA processing	0.00E+00
4	GO:0090342: regulation of cell aging	0.00E+00
5	GO:1900865: chloroplast RNA modification	0.00E+00
6	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
7	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
8	GO:0043043: peptide biosynthetic process	0.00E+00
9	GO:0010027: thylakoid membrane organization	2.96E-16
10	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.21E-14
11	GO:0006364: rRNA processing	3.26E-12
12	GO:0009306: protein secretion	1.16E-07
13	GO:0016226: iron-sulfur cluster assembly	1.37E-07
14	GO:0045036: protein targeting to chloroplast	2.05E-07
15	GO:0006655: phosphatidylglycerol biosynthetic process	3.33E-07
16	GO:0009902: chloroplast relocation	5.11E-07
17	GO:0006399: tRNA metabolic process	6.49E-07
18	GO:0015995: chlorophyll biosynthetic process	8.18E-07
19	GO:0009073: aromatic amino acid family biosynthetic process	1.14E-06
20	GO:0045038: protein import into chloroplast thylakoid membrane	1.91E-06
21	GO:0006098: pentose-phosphate shunt	2.01E-06
22	GO:0010103: stomatal complex morphogenesis	2.29E-06
23	GO:0010207: photosystem II assembly	2.85E-06
24	GO:0009658: chloroplast organization	5.26E-06
25	GO:0042793: transcription from plastid promoter	1.25E-05
26	GO:0006636: unsaturated fatty acid biosynthetic process	1.76E-05
27	GO:0045893: positive regulation of transcription, DNA-templated	5.08E-05
28	GO:0006733: oxidoreduction coenzyme metabolic process	8.23E-05
29	GO:0006779: porphyrin-containing compound biosynthetic process	1.63E-04
30	GO:0006546: glycine catabolic process	1.63E-04
31	GO:0009117: nucleotide metabolic process	1.78E-04
32	GO:0006782: protoporphyrinogen IX biosynthetic process	1.78E-04
33	GO:0019748: secondary metabolic process	3.11E-04
34	GO:0006569: tryptophan catabolic process	3.11E-04
35	GO:0019344: cysteine biosynthetic process	3.17E-04
36	GO:0019684: photosynthesis, light reaction	5.04E-04
37	GO:0009106: lipoate metabolic process	6.85E-04
38	GO:0006766: vitamin metabolic process	6.85E-04
39	GO:0009814: defense response, incompatible interaction	6.85E-04
40	GO:0009108: coenzyme biosynthetic process	6.85E-04
41	GO:0034660: ncRNA metabolic process	6.85E-04
42	GO:0035304: regulation of protein dephosphorylation	8.27E-04
43	GO:0009773: photosynthetic electron transport in photosystem I	8.27E-04
44	GO:0032543: mitochondrial translation	8.75E-04
45	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	8.75E-04
46	GO:0006591: ornithine metabolic process	8.75E-04
47	GO:0016050: vesicle organization	8.75E-04
48	GO:0043085: positive regulation of catalytic activity	1.35E-03
49	GO:0009684: indoleacetic acid biosynthetic process	1.54E-03
50	GO:0016556: mRNA modification	1.88E-03
51	GO:0009735: response to cytokinin	1.98E-03
52	GO:1901671: positive regulation of superoxide dismutase activity	1.99E-03
53	GO:0019464: glycine decarboxylation via glycine cleavage system	1.99E-03
54	GO:0051555: flavonol biosynthetic process	1.99E-03
55	GO:0010236: plastoquinone biosynthetic process	1.99E-03
56	GO:0010253: UDP-rhamnose biosynthetic process	1.99E-03
57	GO:0042372: phylloquinone biosynthetic process	1.99E-03
58	GO:0010192: mucilage biosynthetic process	1.99E-03
59	GO:0009688: abscisic acid biosynthetic process	1.99E-03
60	GO:0009225: nucleotide-sugar metabolic process	1.99E-03
61	GO:0016117: carotenoid biosynthetic process	2.41E-03
62	GO:0051607: defense response to virus	3.16E-03
63	GO:0043067: regulation of programmed cell death	3.32E-03
64	GO:0009231: riboflavin biosynthetic process	3.32E-03
65	GO:0009247: glycolipid biosynthetic process	3.32E-03
66	GO:0019760: glucosinolate metabolic process	3.32E-03
67	GO:0007186: G-protein coupled receptor signaling pathway	3.32E-03
68	GO:0010038: response to metal ion	3.32E-03
69	GO:0010731: protein glutathionylation	3.32E-03
70	GO:0045226: extracellular polysaccharide biosynthetic process	3.32E-03
71	GO:0016075: rRNA catabolic process	3.32E-03
72	GO:0019252: starch biosynthetic process	3.34E-03
73	GO:0008299: isoprenoid biosynthetic process	3.70E-03
74	GO:0000023: maltose metabolic process	3.81E-03
75	GO:0006414: translational elongation	4.86E-03
76	GO:0030154: cell differentiation	4.87E-03
77	GO:0006228: UTP biosynthetic process	4.92E-03
78	GO:0010304: PSII associated light-harvesting complex II catabolic process	4.92E-03
79	GO:0051205: protein insertion into membrane	4.92E-03
80	GO:0045037: protein import into chloroplast stroma	4.92E-03
81	GO:0019375: galactolipid biosynthetic process	4.92E-03
82	GO:0006183: GTP biosynthetic process	4.92E-03
83	GO:0006241: CTP biosynthetic process	4.92E-03
84	GO:0010214: seed coat development	4.92E-03
85	GO:0000373: Group II intron splicing	4.92E-03
86	GO:0071704: organic substance metabolic process	4.92E-03
87	GO:0006165: nucleoside diphosphate phosphorylation	4.92E-03
88	GO:0010267: production of ta-siRNAs involved in RNA interference	5.52E-03
89	GO:0035196: production of miRNAs involved in gene silencing by miRNA	5.52E-03
90	GO:0015979: photosynthesis	5.58E-03
91	GO:0009813: flavonoid biosynthetic process	6.72E-03
92	GO:0009308: amine metabolic process	6.72E-03
93	GO:0010315: auxin efflux	6.72E-03
94	GO:0009772: photosynthetic electron transport in photosystem II	6.72E-03
95	GO:0006184: obsolete GTP catabolic process	7.19E-03
96	GO:0006200: obsolete ATP catabolic process	7.44E-03
97	GO:0009695: jasmonic acid biosynthetic process	7.78E-03
98	GO:0000105: histidine biosynthetic process	8.70E-03
99	GO:0048229: gametophyte development	8.70E-03
100	GO:0009411: response to UV	1.09E-02
101	GO:0010583: response to cyclopentenone	1.09E-02
102	GO:0051604: protein maturation	1.32E-02
103	GO:0009409: response to cold	1.32E-02
104	GO:0006457: protein folding	1.41E-02
105	GO:0009585: red, far-red light phototransduction	1.57E-02
106	GO:0019761: glucosinolate biosynthetic process	1.71E-02
107	GO:0009407: toxin catabolic process	1.84E-02
108	GO:0009697: salicylic acid biosynthetic process	2.12E-02
109	GO:0009567: double fertilization forming a zygote and endosperm	2.12E-02
110	GO:0006354: DNA-templated transcription, elongation	2.12E-02
111	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.41E-02
112	GO:0006974: cellular response to DNA damage stimulus	2.41E-02
113	GO:0009793: embryo development ending in seed dormancy	2.61E-02
114	GO:0015996: chlorophyll catabolic process	3.38E-02
115	GO:0042545: cell wall modification	3.73E-02
116	GO:0009965: leaf morphogenesis	3.96E-02
117	GO:0009657: plastid organization	4.09E-02
118	GO:0006631: fatty acid metabolic process	4.09E-02
119	GO:0006417: regulation of translation	4.47E-02
120	GO:0016036: cellular response to phosphate starvation	4.47E-02
121	GO:0006310: DNA recombination	4.47E-02
122	GO:0006352: DNA-templated transcription, initiation	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
2	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
3	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
4	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
5	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
6	GO:0003919: FMN adenylyltransferase activity	0.00E+00
7	GO:0005504: fatty acid binding	0.00E+00
8	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0004853: uroporphyrinogen decarboxylase activity	2.41E-05
11	GO:0008565: protein transporter activity	8.32E-05
12	GO:0004765: shikimate kinase activity	1.78E-04
13	GO:0004525: ribonuclease III activity	6.85E-04
14	GO:0008146: sulfotransferase activity	8.75E-04
15	GO:0050377: UDP-glucose 4,6-dehydratase activity	8.75E-04
16	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	8.75E-04
17	GO:0045174: glutathione dehydrogenase (ascorbate) activity	8.75E-04
18	GO:0010280: UDP-L-rhamnose synthase activity	8.75E-04
19	GO:0004585: ornithine carbamoyltransferase activity	8.75E-04
20	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.54E-03
21	GO:0004462: lactoylglutathione lyase activity	1.99E-03
22	GO:0045430: chalcone isomerase activity	1.99E-03
23	GO:0016630: protochlorophyllide reductase activity	1.99E-03
24	GO:0003746: translation elongation factor activity	3.19E-03
25	GO:0016743: carboxyl- or carbamoyltransferase activity	3.32E-03
26	GO:0008460: dTDP-glucose 4,6-dehydratase activity	3.32E-03
27	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	3.32E-03
28	GO:0000774: adenyl-nucleotide exchange factor activity	3.32E-03
29	GO:0016872: intramolecular lyase activity	3.32E-03
30	GO:0003959: NADPH dehydrogenase activity	3.32E-03
31	GO:0016831: carboxy-lyase activity	4.27E-03
32	GO:0003723: RNA binding	4.28E-03
33	GO:0004550: nucleoside diphosphate kinase activity	4.92E-03
34	GO:0003913: DNA photolyase activity	4.92E-03
35	GO:0070569: uridylyltransferase activity	4.92E-03
36	GO:0004659: prenyltransferase activity	4.92E-03
37	GO:0051082: unfolded protein binding	6.19E-03
38	GO:0016868: intramolecular transferase activity, phosphotransferases	6.72E-03
39	GO:0016987: sigma factor activity	6.72E-03
40	GO:0031072: heat shock protein binding	7.78E-03
41	GO:0016817: hydrolase activity, acting on acid anhydrides	8.70E-03
42	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.09E-02
43	GO:0000287: magnesium ion binding	1.13E-02
44	GO:0043022: ribosome binding	1.32E-02
45	GO:0051087: chaperone binding	1.32E-02
46	GO:0016887: ATPase activity	1.42E-02
47	GO:0005525: GTP binding	1.67E-02
48	GO:0000049: tRNA binding	1.84E-02
49	GO:0046914: transition metal ion binding	2.12E-02
50	GO:0048038: quinone binding	3.38E-02
51	GO:0005216: ion channel activity	3.73E-02
52	GO:0003924: GTPase activity	4.05E-02
53	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.09E-02
54	GO:0016829: lyase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0055035: plastid thylakoid membrane	0.00E+00
2	GO:0031361: integral component of thylakoid membrane	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	5.65E-27
5	GO:0009570: chloroplast stroma	4.25E-17
6	GO:0009535: chloroplast thylakoid membrane	2.04E-15
7	GO:0009941: chloroplast envelope	6.83E-10
8	GO:0009579: thylakoid	1.91E-07
9	GO:0009534: chloroplast thylakoid	1.26E-05
10	GO:0031977: thylakoid lumen	4.53E-05
11	GO:0009295: nucleoid	1.63E-04
12	GO:0009543: chloroplast thylakoid lumen	2.73E-04
13	GO:0009528: plastid inner membrane	8.75E-04
14	GO:0009527: plastid outer membrane	8.75E-04
15	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	8.75E-04
16	GO:0009526: plastid envelope	8.75E-04
17	GO:0005960: glycine cleavage complex	8.75E-04
18	GO:0044445: cytosolic part	8.75E-04
19	GO:0009532: plastid stroma	9.31E-04
20	GO:0009840: chloroplastic endopeptidase Clp complex	6.72E-03
21	GO:0009508: plastid chromosome	6.72E-03
22	GO:0019013: viral nucleocapsid	6.98E-03
23	GO:0019898: extrinsic component of membrane	8.70E-03
24	GO:0009706: chloroplast inner membrane	9.51E-03
25	GO:0009654: photosystem II oxygen evolving complex	1.09E-02
26	GO:0005759: mitochondrial matrix	1.14E-02
27	GO:0009523: photosystem II	1.35E-02
28	GO:0010319: stromule	1.84E-02
29	GO:0009536: plastid	2.20E-02