co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G089136

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035436: triose phosphate transmembrane transport	0.00E+00
2	GO:0015714: phosphoenolpyruvate transport	0.00E+00
3	GO:0030243: cellulose metabolic process	0.00E+00
4	GO:0030388: fructose 1,6-bisphosphate metabolic process	0.00E+00
5	GO:0055070: copper ion homeostasis	0.00E+00
6	GO:0051188: cofactor biosynthetic process	0.00E+00
7	GO:0089722: phosphoenolpyruvate transmembrane transport	0.00E+00
8	GO:0042550: photosystem I stabilization	0.00E+00
9	GO:2000505: regulation of energy homeostasis	0.00E+00
10	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	0.00E+00
11	GO:0009780: photosynthetic NADP+ reduction	0.00E+00
12	GO:0042221: response to chemical	0.00E+00
13	GO:0010028: xanthophyll cycle	0.00E+00
14	GO:0019676: ammonia assimilation cycle	0.00E+00
15	GO:0015979: photosynthesis	2.51E-20
16	GO:0010207: photosystem II assembly	1.77E-13
17	GO:0009773: photosynthetic electron transport in photosystem I	2.82E-13
18	GO:0015995: chlorophyll biosynthetic process	6.79E-13
19	GO:0006098: pentose-phosphate shunt	7.96E-12
20	GO:0016117: carotenoid biosynthetic process	2.11E-11
21	GO:0010027: thylakoid membrane organization	8.78E-10
22	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.31E-09
23	GO:0006364: rRNA processing	3.61E-09
24	GO:0009902: chloroplast relocation	7.61E-09
25	GO:0009637: response to blue light	2.67E-08
26	GO:0010114: response to red light	4.65E-08
27	GO:0010218: response to far red light	7.77E-08
28	GO:0043085: positive regulation of catalytic activity	6.44E-07
29	GO:0010155: regulation of proton transport	8.87E-07
30	GO:0000023: maltose metabolic process	2.17E-06
31	GO:0070838: divalent metal ion transport	3.59E-06
32	GO:0009772: photosynthetic electron transport in photosystem II	3.59E-06
33	GO:0019252: starch biosynthetic process	4.85E-06
34	GO:0009767: photosynthetic electron transport chain	7.66E-06
35	GO:0009108: coenzyme biosynthetic process	1.49E-05
36	GO:0009106: lipoate metabolic process	1.49E-05
37	GO:0030003: cellular cation homeostasis	1.49E-05
38	GO:0006766: vitamin metabolic process	1.49E-05
39	GO:0010103: stomatal complex morphogenesis	3.33E-05
40	GO:0009072: aromatic amino acid family metabolic process	4.01E-05
41	GO:0046777: protein autophosphorylation	4.22E-05
42	GO:0006814: sodium ion transport	8.41E-05
43	GO:0006546: glycine catabolic process	1.14E-04
44	GO:0009765: photosynthesis, light harvesting	1.14E-04
45	GO:0080167: response to karrikin	1.15E-04
46	GO:0019216: regulation of lipid metabolic process	1.36E-04
47	GO:0009595: detection of biotic stimulus	1.36E-04
48	GO:0042793: transcription from plastid promoter	1.94E-04
49	GO:0019344: cysteine biosynthetic process	2.09E-04
50	GO:0019761: glucosinolate biosynthetic process	2.39E-04
51	GO:0000096: sulfur amino acid metabolic process	2.40E-04
52	GO:0043900: regulation of multi-organism process	2.40E-04
53	GO:0019748: secondary metabolic process	2.40E-04
54	GO:0006636: unsaturated fatty acid biosynthetic process	2.44E-04
55	GO:0018298: protein-chromophore linkage	4.36E-04
56	GO:0010206: photosystem II repair	5.36E-04
57	GO:0034660: ncRNA metabolic process	5.36E-04
58	GO:0009411: response to UV	5.36E-04
59	GO:0015986: ATP synthesis coupled proton transport	6.97E-04
60	GO:0009695: jasmonic acid biosynthetic process	6.97E-04
61	GO:0010310: regulation of hydrogen peroxide metabolic process	7.29E-04
62	GO:0022900: electron transport chain	8.53E-04
63	GO:0015977: carbon fixation	9.54E-04
64	GO:0009697: salicylic acid biosynthetic process	1.49E-03
65	GO:0006354: DNA-templated transcription, elongation	1.49E-03
66	GO:0016556: mRNA modification	1.49E-03
67	GO:0006875: cellular metal ion homeostasis	1.70E-03
68	GO:0044272: sulfur compound biosynthetic process	1.70E-03
69	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.80E-03
70	GO:0009416: response to light stimulus	2.18E-03
71	GO:0031408: oxylipin biosynthetic process	2.50E-03
72	GO:0019760: glucosinolate metabolic process	2.82E-03
73	GO:0006733: oxidoreduction coenzyme metabolic process	2.82E-03
74	GO:0016024: CDP-diacylglycerol biosynthetic process	2.82E-03
75	GO:0022904: respiratory electron transport chain	2.82E-03
76	GO:0051289: protein homotetramerization	2.82E-03
77	GO:0009750: response to fructose	3.35E-03
78	GO:0006833: water transport	3.35E-03
79	GO:0009744: response to sucrose	3.58E-03
80	GO:0019684: photosynthesis, light reaction	3.84E-03
81	GO:0009749: response to glucose	3.84E-03
82	GO:0009657: plastid organization	3.84E-03
83	GO:0006014: D-ribose metabolic process	4.18E-03
84	GO:0010196: nonphotochemical quenching	4.18E-03
85	GO:0050821: protein stabilization	4.18E-03
86	GO:0016485: protein processing	4.18E-03
87	GO:0051260: protein homooligomerization	4.18E-03
88	GO:0009117: nucleotide metabolic process	4.18E-03
89	GO:0045037: protein import into chloroplast stroma	4.18E-03
90	GO:0009966: regulation of signal transduction	4.37E-03
91	GO:0009624: response to nematode	4.49E-03
92	GO:0009644: response to high light intensity	4.81E-03
93	GO:0006612: protein targeting to membrane	4.91E-03
94	GO:0010200: response to chitin	4.91E-03
95	GO:0035304: regulation of protein dephosphorylation	5.50E-03
96	GO:0010363: regulation of plant-type hypersensitive response	5.50E-03
97	GO:0070084: protein initiator methionine removal	5.69E-03
98	GO:0006796: phosphate-containing compound metabolic process	5.69E-03
99	GO:0009813: flavonoid biosynthetic process	5.69E-03
100	GO:0034755: iron ion transmembrane transport	5.69E-03
101	GO:0007568: aging	5.69E-03
102	GO:0015994: chlorophyll metabolic process	5.69E-03
103	GO:0009867: jasmonic acid mediated signaling pathway	6.13E-03
104	GO:0031348: negative regulation of defense response	6.13E-03
105	GO:0006568: tryptophan metabolic process	7.37E-03
106	GO:0046688: response to copper ion	7.37E-03
107	GO:0006542: glutamine biosynthetic process	7.37E-03
108	GO:0017148: negative regulation of translation	7.37E-03
109	GO:0000165: MAPK cascade	9.01E-03
110	GO:0000413: protein peptidyl-prolyl isomerization	9.01E-03
111	GO:0009987: cellular process	9.21E-03
112	GO:0005985: sucrose metabolic process	1.12E-02
113	GO:0046939: nucleotide phosphorylation	1.12E-02
114	GO:0000162: tryptophan biosynthetic process	1.33E-02
115	GO:0055114: oxidation-reduction process	1.54E-02
116	GO:0009832: plant-type cell wall biogenesis	1.55E-02
117	GO:0006006: glucose metabolic process	1.79E-02
118	GO:0006754: ATP biosynthetic process	1.79E-02
119	GO:0009658: chloroplast organization	1.89E-02
120	GO:0046854: phosphatidylinositol phosphorylation	2.30E-02
121	GO:0009409: response to cold	2.52E-02
122	GO:0008652: cellular amino acid biosynthetic process	2.54E-02
123	GO:0006108: malate metabolic process	2.58E-02
124	GO:0006655: phosphatidylglycerol biosynthetic process	2.58E-02
125	GO:0006096: glycolytic process	2.63E-02
126	GO:0007030: Golgi organization	2.86E-02
127	GO:0016049: cell growth	3.15E-02
128	GO:0006972: hyperosmotic response	3.15E-02
129	GO:0030154: cell differentiation	3.46E-02
130	GO:0015992: proton transport	3.46E-02
131	GO:0016126: sterol biosynthetic process	3.46E-02
132	GO:0006631: fatty acid metabolic process	3.46E-02
133	GO:0042742: defense response to bacterium	3.64E-02
134	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.77E-02
135	GO:0010193: response to ozone	4.10E-02
136	GO:0045893: positive regulation of transcription, DNA-templated	4.14E-02
137	GO:0050832: defense response to fungus	4.33E-02
138	GO:0010224: response to UV-B	4.44E-02
139	GO:0006139: nucleobase-containing compound metabolic process	4.44E-02
140	GO:0006807: nitrogen compound metabolic process	4.44E-02
141	GO:0009817: defense response to fungus, incompatible interaction	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0015131: oxaloacetate transmembrane transporter activity	0.00E+00
2	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	0.00E+00
5	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
6	GO:0045550: geranylgeranyl reductase activity	0.00E+00
7	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
8	GO:0030385: ferredoxin:thioredoxin reductase activity	0.00E+00
9	GO:0008937: ferredoxin-NAD(P) reductase activity	0.00E+00
10	GO:0004802: transketolase activity	0.00E+00
11	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
12	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
13	GO:0009670: triose-phosphate:phosphate antiporter activity	0.00E+00
14	GO:0051738: xanthophyll binding	0.00E+00
15	GO:0016168: chlorophyll binding	2.18E-08
16	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.34E-06
17	GO:0009055: electron carrier activity	1.19E-05
18	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	1.79E-05
19	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.14E-04
20	GO:0016984: ribulose-bisphosphate carboxylase activity	1.36E-04
21	GO:0004332: fructose-bisphosphate aldolase activity	1.36E-04
22	GO:0051537: 2 iron, 2 sulfur cluster binding	6.97E-04
23	GO:0015140: malate transmembrane transporter activity	7.41E-04
24	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	7.41E-04
25	GO:0015088: copper uptake transmembrane transporter activity	7.41E-04
26	GO:0045430: chalcone isomerase activity	1.70E-03
27	GO:0004605: phosphatidate cytidylyltransferase activity	1.70E-03
28	GO:0051920: peroxiredoxin activity	1.70E-03
29	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.70E-03
30	GO:0033897: ribonuclease T2 activity	2.82E-03
31	GO:0016872: intramolecular lyase activity	2.82E-03
32	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	2.82E-03
33	GO:0016209: antioxidant activity	4.18E-03
34	GO:0071949: FAD binding	4.18E-03
35	GO:0004747: ribokinase activity	4.18E-03
36	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.18E-03
37	GO:0005381: iron ion transmembrane transporter activity	5.69E-03
38	GO:0004470: malic enzyme activity	5.69E-03
39	GO:0004017: adenylate kinase activity	5.69E-03
40	GO:0070006: metalloaminopeptidase activity	5.69E-03
41	GO:0008235: metalloexopeptidase activity	7.37E-03
42	GO:0004356: glutamate-ammonia ligase activity	7.37E-03
43	GO:0004834: tryptophan synthase activity	7.37E-03
44	GO:0051287: NAD binding	8.92E-03
45	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	9.21E-03
46	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	9.21E-03
47	GO:0019201: nucleotide kinase activity	9.21E-03
48	GO:0019205: nucleobase-containing compound kinase activity	9.21E-03
49	GO:0051536: iron-sulfur cluster binding	9.43E-03
50	GO:0005215: transporter activity	9.97E-03
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.07E-02
52	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.33E-02
53	GO:0004427: inorganic diphosphatase activity	1.33E-02
54	GO:0042578: phosphoric ester hydrolase activity	1.33E-02
55	GO:0008266: poly(U) RNA binding	1.33E-02
56	GO:0004177: aminopeptidase activity	1.55E-02
57	GO:0046914: transition metal ion binding	1.79E-02
58	GO:0048037: cofactor binding	2.04E-02
59	GO:0003690: double-stranded DNA binding	2.04E-02
60	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.86E-02
61	GO:0042803: protein homodimerization activity	2.98E-02
62	GO:0004713: protein tyrosine kinase activity	3.15E-02
63	GO:0008080: N-acetyltransferase activity	3.46E-02
64	GO:0016829: lyase activity	3.70E-02
65	GO:0015035: protein disulfide oxidoreductase activity	3.96E-02
66	GO:0015297: antiporter activity	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0009512: cytochrome b6f complex	0.00E+00
2	GO:0030093: chloroplast photosystem I	0.00E+00
3	GO:0009507: chloroplast	6.36E-37
4	GO:0009535: chloroplast thylakoid membrane	2.03E-29
5	GO:0009941: chloroplast envelope	2.82E-23
6	GO:0009579: thylakoid	1.35E-22
7	GO:0009522: photosystem I	3.36E-15
8	GO:0010287: plastoglobule	2.29E-11
9	GO:0009543: chloroplast thylakoid lumen	3.80E-11
10	GO:0031977: thylakoid lumen	6.21E-11
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.05E-10
12	GO:0009534: chloroplast thylakoid	6.69E-10
13	GO:0009538: photosystem I reaction center	3.54E-09
14	GO:0009570: chloroplast stroma	6.02E-09
15	GO:0009523: photosystem II	4.33E-07
16	GO:0016020: membrane	1.76E-05
17	GO:0009508: plastid chromosome	2.40E-04
18	GO:0019898: extrinsic component of membrane	3.74E-04
19	GO:0009654: photosystem II oxygen evolving complex	5.36E-04
20	GO:0009517: PSII associated light-harvesting complex II	7.41E-04
21	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	7.41E-04
22	GO:0042406: extrinsic component of endoplasmic reticulum membrane	7.41E-04
23	GO:0009706: chloroplast inner membrane	9.18E-04
24	GO:0048046: apoplast	1.07E-03
25	GO:0009533: chloroplast stromal thylakoid	1.70E-03
26	GO:0009295: nucleoid	1.80E-03
27	GO:0042651: thylakoid membrane	2.50E-03
28	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	9.21E-03
29	GO:0010319: stromule	1.45E-02
30	GO:0009536: plastid	1.47E-02