co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G088847

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
2	GO:0010275: NAD(P)H dehydrogenase complex assembly	0.00E+00
3	GO:0042821: pyridoxal biosynthetic process	0.00E+00
4	GO:1901259: chloroplast rRNA processing	0.00E+00
5	GO:0010028: xanthophyll cycle	0.00E+00
6	GO:0090342: regulation of cell aging	0.00E+00
7	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.37E-09
8	GO:0006636: unsaturated fatty acid biosynthetic process	1.06E-07
9	GO:0009106: lipoate metabolic process	3.79E-07
10	GO:0006766: vitamin metabolic process	3.79E-07
11	GO:0009108: coenzyme biosynthetic process	3.79E-07
12	GO:0010027: thylakoid membrane organization	2.67E-06
13	GO:0016117: carotenoid biosynthetic process	2.95E-06
14	GO:0006546: glycine catabolic process	3.52E-06
15	GO:0045038: protein import into chloroplast thylakoid membrane	1.04E-05
16	GO:0015995: chlorophyll biosynthetic process	1.36E-05
17	GO:0000096: sulfur amino acid metabolic process	1.97E-05
18	GO:0019748: secondary metabolic process	1.97E-05
19	GO:0009695: jasmonic acid biosynthetic process	2.98E-05
20	GO:0006098: pentose-phosphate shunt	9.47E-05
21	GO:0009072: aromatic amino acid family metabolic process	9.65E-05
22	GO:0019761: glucosinolate biosynthetic process	1.05E-04
23	GO:0009443: pyridoxal 5'-phosphate salvage	1.61E-04
24	GO:0016050: vesicle organization	1.61E-04
25	GO:0006655: phosphatidylglycerol biosynthetic process	2.89E-04
26	GO:0042793: transcription from plastid promoter	2.89E-04
27	GO:0043085: positive regulation of catalytic activity	3.40E-04
28	GO:0042372: phylloquinone biosynthetic process	3.93E-04
29	GO:0044272: sulfur compound biosynthetic process	3.93E-04
30	GO:0030154: cell differentiation	4.56E-04
31	GO:0006631: fatty acid metabolic process	4.56E-04
32	GO:0045893: positive regulation of transcription, DNA-templated	5.38E-04
33	GO:0007186: G-protein coupled receptor signaling pathway	6.74E-04
34	GO:0006733: oxidoreduction coenzyme metabolic process	6.74E-04
35	GO:0006014: D-ribose metabolic process	1.00E-03
36	GO:0019216: regulation of lipid metabolic process	1.00E-03
37	GO:0051205: protein insertion into membrane	1.00E-03
38	GO:0009117: nucleotide metabolic process	1.00E-03
39	GO:0045037: protein import into chloroplast stroma	1.00E-03
40	GO:0000413: protein peptidyl-prolyl isomerization	1.10E-03
41	GO:0009902: chloroplast relocation	1.10E-03
42	GO:0015979: photosynthesis	1.18E-03
43	GO:0006569: tryptophan catabolic process	1.36E-03
44	GO:0060416: response to growth hormone	1.36E-03
45	GO:0009813: flavonoid biosynthetic process	1.36E-03
46	GO:0015994: chlorophyll metabolic process	1.36E-03
47	GO:0009073: aromatic amino acid family biosynthetic process	1.41E-03
48	GO:0016226: iron-sulfur cluster assembly	1.88E-03
49	GO:0006364: rRNA processing	2.10E-03
50	GO:0000023: maltose metabolic process	2.13E-03
51	GO:0010206: photosystem II repair	2.15E-03
52	GO:0034660: ncRNA metabolic process	2.15E-03
53	GO:0030003: cellular cation homeostasis	2.15E-03
54	GO:0009704: de-etiolation	2.15E-03
55	GO:0009658: chloroplast organization	2.27E-03
56	GO:0015693: magnesium ion transport	2.57E-03
57	GO:0006399: tRNA metabolic process	2.57E-03
58	GO:0008652: cellular amino acid biosynthetic process	3.02E-03
59	GO:0009684: indoleacetic acid biosynthetic process	3.56E-03
60	GO:0009965: leaf morphogenesis	3.75E-03
61	GO:0016556: mRNA modification	4.09E-03
62	GO:0048527: lateral root development	4.09E-03
63	GO:0010207: photosystem II assembly	4.34E-03
64	GO:0006974: cellular response to DNA damage stimulus	4.65E-03
65	GO:0031408: oxylipin biosynthetic process	5.83E-03
66	GO:0019252: starch biosynthetic process	6.38E-03
67	GO:0006310: DNA recombination	8.48E-03
68	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	8.48E-03
69	GO:0006417: regulation of translation	8.48E-03
70	GO:0010103: stomatal complex morphogenesis	9.21E-03
71	GO:0035304: regulation of protein dephosphorylation	9.95E-03
72	GO:0006139: nucleobase-containing compound metabolic process	9.95E-03
73	GO:0009773: photosynthetic electron transport in photosystem I	9.95E-03
74	GO:0046777: protein autophosphorylation	9.95E-03
75	GO:0010182: sugar mediated signaling pathway	9.95E-03
76	GO:0019344: cysteine biosynthetic process	1.75E-02
77	GO:0006812: cation transport	2.88E-02
78	GO:0032259: methylation	2.95E-02
79	GO:0030001: metal ion transport	3.11E-02
80	GO:0006200: obsolete ATP catabolic process	3.22E-02
81	GO:0006457: protein folding	3.50E-02
82	GO:0042742: defense response to bacterium	3.89E-02
83	GO:0009416: response to light stimulus	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
2	GO:0005504: fatty acid binding	0.00E+00
3	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
4	GO:0031679: NADH dehydrogenase (plastoquinone) activity	0.00E+00
5	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
6	GO:0070402: NADPH binding	1.61E-04
7	GO:0045430: chalcone isomerase activity	3.93E-04
8	GO:0016872: intramolecular lyase activity	6.74E-04
9	GO:0004747: ribokinase activity	1.00E-03
10	GO:0004765: shikimate kinase activity	1.00E-03
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.30E-03
12	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.56E-03
13	GO:0015095: magnesium ion transmembrane transporter activity	3.56E-03
14	GO:0046873: metal ion transmembrane transporter activity	3.56E-03
15	GO:0000049: tRNA binding	3.56E-03
16	GO:0003690: double-stranded DNA binding	4.65E-03
17	GO:0005216: ion channel activity	7.12E-03
18	GO:0016853: isomerase activity	1.61E-02
19	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.85E-02
20	GO:0004364: glutathione transferase activity	2.14E-02
21	GO:0008026: ATP-dependent helicase activity	2.77E-02
22	GO:0008168: methyltransferase activity	3.57E-02
23	GO:0015035: protein disulfide oxidoreductase activity	3.95E-02
24	GO:0016887: ATPase activity	4.59E-02
25	GO:0004252: serine-type endopeptidase activity	4.72E-02
26	GO:0004386: helicase activity	4.99E-02
27	GO:0016788: hydrolase activity, acting on ester bonds	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.52E-14
2	GO:0009543: chloroplast thylakoid lumen	7.37E-08
3	GO:0009535: chloroplast thylakoid membrane	9.02E-08
4	GO:0009534: chloroplast thylakoid	4.16E-07
5	GO:0031977: thylakoid lumen	4.75E-06
6	GO:0009570: chloroplast stroma	7.37E-05
7	GO:0009527: plastid outer membrane	1.61E-04
8	GO:0009528: plastid inner membrane	1.61E-04
9	GO:0009579: thylakoid	1.92E-04
10	GO:0009941: chloroplast envelope	3.59E-04
11	GO:0009508: plastid chromosome	1.36E-03
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.74E-03
13	GO:0009532: plastid stroma	2.57E-03
14	GO:0009295: nucleoid	4.65E-03
15	GO:0009706: chloroplast inner membrane	1.23E-02
16	GO:0009523: photosystem II	1.57E-02
17	GO:0010319: stromule	1.94E-02