co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G088565

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032544: plastid translation	0.00E+00
2	GO:0071486: cellular response to high light intensity	0.00E+00
3	GO:0043043: peptide biosynthetic process	0.00E+00
4	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
5	GO:0006436: tryptophanyl-tRNA aminoacylation	0.00E+00
6	GO:0006412: translation	1.77E-13
7	GO:0010027: thylakoid membrane organization	3.57E-08
8	GO:0045036: protein targeting to chloroplast	1.65E-06
9	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.71E-06
10	GO:0009658: chloroplast organization	1.14E-05
11	GO:0035304: regulation of protein dephosphorylation	1.41E-05
12	GO:0009793: embryo development ending in seed dormancy	6.25E-05
13	GO:0042793: transcription from plastid promoter	8.55E-05
14	GO:0016226: iron-sulfur cluster assembly	1.16E-04
15	GO:0000096: sulfur amino acid metabolic process	1.31E-04
16	GO:0006418: tRNA aminoacylation for protein translation	1.69E-04
17	GO:0018160: peptidyl-pyrromethane cofactor linkage	5.07E-04
18	GO:0006573: valine metabolic process	5.07E-04
19	GO:0006433: prolyl-tRNA aminoacylation	5.07E-04
20	GO:0006282: regulation of DNA repair	5.07E-04
21	GO:0009069: serine family amino acid metabolic process	5.07E-04
22	GO:0019676: ammonia assimilation cycle	5.07E-04
23	GO:0006430: lysyl-tRNA aminoacylation	5.07E-04
24	GO:0008361: regulation of cell size	5.07E-04
25	GO:0006434: seryl-tRNA aminoacylation	5.07E-04
26	GO:0010207: photosystem II assembly	5.29E-04
27	GO:0009902: chloroplast relocation	5.69E-04
28	GO:0009735: response to cytokinin	7.18E-04
29	GO:0006354: DNA-templated transcription, elongation	8.64E-04
30	GO:0006779: porphyrin-containing compound biosynthetic process	1.05E-03
31	GO:0006546: glycine catabolic process	1.05E-03
32	GO:1901671: positive regulation of superoxide dismutase activity	1.18E-03
33	GO:0019464: glycine decarboxylation via glycine cleavage system	1.18E-03
34	GO:0010109: regulation of photosynthesis	1.18E-03
35	GO:0010236: plastoquinone biosynthetic process	1.18E-03
36	GO:0048653: anther development	1.18E-03
37	GO:0044272: sulfur compound biosynthetic process	1.18E-03
38	GO:0048481: plant ovule development	1.42E-03
39	GO:0030497: fatty acid elongation	1.98E-03
40	GO:0034599: cellular response to oxidative stress	1.98E-03
41	GO:0009247: glycolipid biosynthetic process	1.98E-03
42	GO:0006733: oxidoreduction coenzyme metabolic process	1.98E-03
43	GO:0008652: cellular amino acid biosynthetic process	2.23E-03
44	GO:0015995: chlorophyll biosynthetic process	2.23E-03
45	GO:0010228: vegetative to reproductive phase transition of meristem	2.39E-03
46	GO:0009117: nucleotide metabolic process	2.86E-03
47	GO:0019375: galactolipid biosynthetic process	2.86E-03
48	GO:0007389: pattern specification process	2.86E-03
49	GO:0030259: lipid glycosylation	2.86E-03
50	GO:0019216: regulation of lipid metabolic process	2.86E-03
51	GO:0006364: rRNA processing	3.41E-03
52	GO:0009695: jasmonic acid biosynthetic process	3.56E-03
53	GO:0019748: secondary metabolic process	3.92E-03
54	GO:0007568: aging	3.92E-03
55	GO:0010189: vitamin E biosynthetic process	3.92E-03
56	GO:0010072: primary shoot apical meristem specification	3.92E-03
57	GO:0009088: threonine biosynthetic process	3.92E-03
58	GO:0045893: positive regulation of transcription, DNA-templated	4.22E-03
59	GO:0000105: histidine biosynthetic process	5.05E-03
60	GO:0007005: mitochondrion organization	5.05E-03
61	GO:0006542: glutamine biosynthetic process	5.05E-03
62	GO:0010205: photoinhibition	6.30E-03
63	GO:0006766: vitamin metabolic process	6.30E-03
64	GO:0009411: response to UV	6.30E-03
65	GO:0009108: coenzyme biosynthetic process	6.30E-03
66	GO:0033014: tetrapyrrole biosynthetic process	6.30E-03
67	GO:0006801: superoxide metabolic process	6.30E-03
68	GO:0009926: auxin polar transport	6.30E-03
69	GO:0009106: lipoate metabolic process	6.30E-03
70	GO:0008295: spermidine biosynthetic process	7.65E-03
71	GO:0010099: regulation of photomorphogenesis	7.65E-03
72	GO:0006098: pentose-phosphate shunt	7.76E-03
73	GO:0009790: embryo development	7.83E-03
74	GO:0010114: response to red light	8.42E-03
75	GO:0006633: fatty acid biosynthetic process	8.87E-03
76	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	9.09E-03
77	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	9.09E-03
78	GO:0040007: growth	9.09E-03
79	GO:0010015: root morphogenesis	9.09E-03
80	GO:0009072: aromatic amino acid family metabolic process	9.09E-03
81	GO:0009832: plant-type cell wall biogenesis	1.06E-02
82	GO:0010466: negative regulation of peptidase activity	1.06E-02
83	GO:0009407: toxin catabolic process	1.06E-02
84	GO:0010411: xyloglucan metabolic process	1.06E-02
85	GO:0006073: cellular glucan metabolic process	1.22E-02
86	GO:0016556: mRNA modification	1.22E-02
87	GO:0019722: calcium-mediated signaling	1.57E-02
88	GO:0042546: cell wall biogenesis	1.57E-02
89	GO:0009612: response to mechanical stimulus	1.57E-02
90	GO:0048316: seed development	1.75E-02
91	GO:0006655: phosphatidylglycerol biosynthetic process	1.75E-02
92	GO:0031408: oxylipin biosynthetic process	1.75E-02
93	GO:0010075: regulation of meristem growth	1.95E-02
94	GO:0007030: Golgi organization	1.95E-02
95	GO:0006833: water transport	2.15E-02
96	GO:0006972: hyperosmotic response	2.15E-02
97	GO:0042545: cell wall modification	2.15E-02
98	GO:0009750: response to fructose	2.15E-02
99	GO:0019684: photosynthesis, light reaction	2.36E-02
100	GO:0007623: circadian rhythm	2.36E-02
101	GO:0030154: cell differentiation	2.36E-02
102	GO:0009749: response to glucose	2.36E-02
103	GO:0009664: plant-type cell wall organization	2.57E-02
104	GO:0010155: regulation of proton transport	2.57E-02
105	GO:0008610: lipid biosynthetic process	2.57E-02
106	GO:0006807: nitrogen compound metabolic process	3.02E-02
107	GO:0009620: response to fungus	3.25E-02
108	GO:0048367: shoot system development	3.25E-02
109	GO:0009553: embryo sac development	3.25E-02
110	GO:0009817: defense response to fungus, incompatible interaction	3.25E-02
111	GO:0042254: ribosome biogenesis	3.74E-02
112	GO:0035556: intracellular signal transduction	3.74E-02
113	GO:0009846: pollen germination	3.99E-02
114	GO:0009933: meristem structural organization	4.25E-02
115	GO:0006520: cellular amino acid metabolic process	4.25E-02
116	GO:0000160: phosphorelay signal transduction system	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0004399: histidinol dehydrogenase activity	0.00E+00
2	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
3	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
4	GO:0004830: tryptophan-tRNA ligase activity	0.00E+00
5	GO:0030267: glyoxylate reductase (NADP) activity	0.00E+00
6	GO:0003735: structural constituent of ribosome	2.80E-12
7	GO:0019843: rRNA binding	3.30E-05
8	GO:0004812: aminoacyl-tRNA ligase activity	2.12E-04
9	GO:0004795: threonine synthase activity	5.07E-04
10	GO:0004824: lysine-tRNA ligase activity	5.07E-04
11	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	5.07E-04
12	GO:0004827: proline-tRNA ligase activity	5.07E-04
13	GO:0003989: acetyl-CoA carboxylase activity	5.07E-04
14	GO:0004418: hydroxymethylbilane synthase activity	5.07E-04
15	GO:0016851: magnesium chelatase activity	5.07E-04
16	GO:0004828: serine-tRNA ligase activity	5.07E-04
17	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	5.07E-04
18	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	5.07E-04
19	GO:0035250: UDP-galactosyltransferase activity	5.07E-04
20	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.07E-04
21	GO:0031177: phosphopantetheine binding	5.07E-04
22	GO:0008194: UDP-glycosyltransferase activity	5.07E-04
23	GO:0004252: serine-type endopeptidase activity	9.39E-04
24	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.18E-03
25	GO:0004075: biotin carboxylase activity	1.18E-03
26	GO:0045485: omega-6 fatty acid desaturase activity	1.18E-03
27	GO:0051920: peroxiredoxin activity	1.18E-03
28	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.18E-03
29	GO:0032549: ribonucleoside binding	1.98E-03
30	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.39E-03
31	GO:0016209: antioxidant activity	2.86E-03
32	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	2.86E-03
33	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.92E-03
34	GO:0004356: glutamate-ammonia ligase activity	5.05E-03
35	GO:0004784: superoxide dismutase activity	7.65E-03
36	GO:0008312: 7S RNA binding	7.65E-03
37	GO:0004869: cysteine-type endopeptidase inhibitor activity	7.65E-03
38	GO:0042578: phosphoric ester hydrolase activity	9.09E-03
39	GO:0030414: peptidase inhibitor activity	1.06E-02
40	GO:0046914: transition metal ion binding	1.22E-02
41	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.22E-02
42	GO:0016874: ligase activity	1.28E-02
43	GO:0003993: acid phosphatase activity	1.57E-02
44	GO:0008081: phosphoric diester hydrolase activity	1.95E-02
45	GO:0000156: phosphorelay response regulator activity	1.95E-02
46	GO:0016760: cellulose synthase (UDP-forming) activity	1.95E-02
47	GO:0051287: NAD binding	2.53E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	5.37E-27
2	GO:0009507: chloroplast	9.94E-25
3	GO:0009941: chloroplast envelope	9.04E-20
4	GO:0005840: ribosome	1.71E-15
5	GO:0030529: intracellular ribonucleoprotein complex	4.31E-07
6	GO:0009840: chloroplastic endopeptidase Clp complex	1.40E-06
7	GO:0009579: thylakoid	3.72E-06
8	GO:0005622: intracellular	1.40E-04
9	GO:0009532: plastid stroma	4.16E-04
10	GO:0000311: plastid large ribosomal subunit	5.07E-04
11	GO:0005960: glycine cleavage complex	5.07E-04
12	GO:0009295: nucleoid	1.05E-03
13	GO:0009536: plastid	1.48E-03
14	GO:0009706: chloroplast inner membrane	4.36E-03
15	GO:0048500: signal recognition particle	6.30E-03
16	GO:0015934: large ribosomal subunit	8.42E-03
17	GO:0048046: apoplast	1.26E-02
18	GO:0009535: chloroplast thylakoid membrane	1.44E-02
19	GO:0009534: chloroplast thylakoid	1.48E-02