co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G084944

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043686: co-translational protein modification	0.00E+00
2	GO:0090391: granum assembly	0.00E+00
3	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
4	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
5	GO:0010117: photoprotection	0.00E+00
6	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
7	GO:0009658: chloroplast organization	9.94E-10
8	GO:0006779: porphyrin-containing compound biosynthetic process	1.48E-06
9	GO:1901671: positive regulation of superoxide dismutase activity	1.08E-05
10	GO:0030497: fatty acid elongation	3.85E-05
11	GO:0006457: protein folding	4.17E-05
12	GO:0045037: protein import into chloroplast stroma	8.55E-05
13	GO:0006353: DNA-templated transcription, termination	8.55E-05
14	GO:0042793: transcription from plastid promoter	1.07E-04
15	GO:0010072: primary shoot apical meristem specification	1.54E-04
16	GO:0010027: thylakoid membrane organization	1.67E-04
17	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.93E-04
18	GO:0033014: tetrapyrrole biosynthetic process	3.53E-04
19	GO:0010206: photosystem II repair	3.53E-04
20	GO:0019538: protein metabolic process	3.53E-04
21	GO:0006633: fatty acid biosynthetic process	3.62E-04
22	GO:0080141: regulation of jasmonic acid biosynthetic process	5.60E-04
23	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	5.60E-04
24	GO:0006430: lysyl-tRNA aminoacylation	5.60E-04
25	GO:0051512: positive regulation of unidimensional cell growth	5.60E-04
26	GO:0006429: leucyl-tRNA aminoacylation	5.60E-04
27	GO:0010587: miRNA catabolic process	5.60E-04
28	GO:0009968: negative regulation of signal transduction	5.60E-04
29	GO:0006788: heme oxidation	5.60E-04
30	GO:0043157: response to cation stress	5.60E-04
31	GO:0006433: prolyl-tRNA aminoacylation	5.60E-04
32	GO:0032543: mitochondrial translation	5.60E-04
33	GO:0009902: chloroplast relocation	6.90E-04
34	GO:0019481: L-alanine catabolic process, by transamination	1.30E-03
35	GO:0010109: regulation of photosynthesis	1.30E-03
36	GO:0010024: phytochromobilin biosynthetic process	1.30E-03
37	GO:0010380: regulation of chlorophyll biosynthetic process	1.30E-03
38	GO:0019464: glycine decarboxylation via glycine cleavage system	1.30E-03
39	GO:0006418: tRNA aminoacylation for protein translation	1.85E-03
40	GO:0009247: glycolipid biosynthetic process	2.16E-03
41	GO:0015867: ATP transport	2.16E-03
42	GO:0010143: cutin biosynthetic process	2.16E-03
43	GO:0000304: response to singlet oxygen	2.16E-03
44	GO:0006571: tyrosine biosynthetic process	2.16E-03
45	GO:0006450: regulation of translational fidelity	2.16E-03
46	GO:0006508: proteolysis	2.64E-03
47	GO:0015995: chlorophyll biosynthetic process	2.66E-03
48	GO:0045038: protein import into chloroplast thylakoid membrane	3.16E-03
49	GO:0030259: lipid glycosylation	3.16E-03
50	GO:0006782: protoporphyrinogen IX biosynthetic process	3.16E-03
51	GO:0006790: sulfur compound metabolic process	3.16E-03
52	GO:0010417: glucuronoxylan biosynthetic process	3.16E-03
53	GO:0019375: galactolipid biosynthetic process	3.16E-03
54	GO:0006401: RNA catabolic process	3.16E-03
55	GO:0009627: systemic acquired resistance	3.28E-03
56	GO:0035304: regulation of protein dephosphorylation	3.69E-03
57	GO:0048367: shoot system development	4.11E-03
58	GO:0001676: long-chain fatty acid metabolic process	4.33E-03
59	GO:0006081: cellular aldehyde metabolic process	4.33E-03
60	GO:0010468: regulation of gene expression	4.33E-03
61	GO:0045893: positive regulation of transcription, DNA-templated	5.05E-03
62	GO:0031347: regulation of defense response	5.58E-03
63	GO:0006749: glutathione metabolic process	5.58E-03
64	GO:0009933: meristem structural organization	6.03E-03
65	GO:0006189: 'de novo' IMP biosynthetic process	6.97E-03
66	GO:0010025: wax biosynthetic process	6.97E-03
67	GO:0032880: regulation of protein localization	6.97E-03
68	GO:0009735: response to cytokinin	7.16E-03
69	GO:0019344: cysteine biosynthetic process	8.38E-03
70	GO:0009628: response to abiotic stimulus	8.45E-03
71	GO:0009793: embryo development ending in seed dormancy	1.00E-02
72	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.00E-02
73	GO:0001666: response to hypoxia	1.00E-02
74	GO:0009407: toxin catabolic process	1.17E-02
75	GO:0000302: response to reactive oxygen species	1.17E-02
76	GO:0009834: plant-type secondary cell wall biogenesis	1.17E-02
77	GO:0048481: plant ovule development	1.19E-02
78	GO:0009409: response to cold	1.27E-02
79	GO:0045492: xylan biosynthetic process	1.54E-02
80	GO:0006546: glycine catabolic process	1.54E-02
81	GO:0046854: phosphatidylinositol phosphorylation	1.73E-02
82	GO:0045036: protein targeting to chloroplast	1.73E-02
83	GO:0006364: rRNA processing	1.90E-02
84	GO:0006655: phosphatidylglycerol biosynthetic process	1.94E-02
85	GO:0031408: oxylipin biosynthetic process	1.94E-02
86	GO:0048316: seed development	1.94E-02
87	GO:0048364: root development	2.10E-02
88	GO:0006855: drug transmembrane transport	2.15E-02
89	GO:0005982: starch metabolic process	2.15E-02
90	GO:0034976: response to endoplasmic reticulum stress	2.38E-02
91	GO:0010207: photosystem II assembly	2.43E-02
92	GO:0030154: cell differentiation	2.61E-02
93	GO:0006952: defense response	2.67E-02
94	GO:0008610: lipid biosynthetic process	2.84E-02
95	GO:0044267: cellular protein metabolic process	2.84E-02
96	GO:0010155: regulation of proton transport	2.84E-02
97	GO:0010103: stomatal complex morphogenesis	3.09E-02
98	GO:0046777: protein autophosphorylation	3.34E-02
99	GO:0009416: response to light stimulus	3.43E-02
100	GO:0009553: embryo sac development	3.60E-02
101	GO:0009695: jasmonic acid biosynthetic process	3.60E-02
102	GO:0009620: response to fungus	3.60E-02
103	GO:0009738: abscisic acid-activated signaling pathway	3.87E-02
104	GO:0042254: ribosome biogenesis	4.14E-02
105	GO:0009853: photorespiration	4.42E-02
106	GO:0006098: pentose-phosphate shunt	4.46E-02
107	GO:0006626: protein targeting to mitochondrion	4.71E-02
108	GO:0030163: protein catabolic process	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
2	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
3	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
4	GO:0046408: chlorophyll synthetase activity	0.00E+00
5	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
6	GO:0042586: peptide deformylase activity	0.00E+00
7	GO:0003989: acetyl-CoA carboxylase activity	0.00E+00
8	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
9	GO:0004252: serine-type endopeptidase activity	1.11E-06
10	GO:0004075: biotin carboxylase activity	1.08E-05
11	GO:0000774: adenyl-nucleotide exchange factor activity	3.85E-05
12	GO:0051087: chaperone binding	4.81E-04
13	GO:0016851: magnesium chelatase activity	5.60E-04
14	GO:0004823: leucine-tRNA ligase activity	5.60E-04
15	GO:0031957: very long-chain fatty acid-CoA ligase activity	5.60E-04
16	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.60E-04
17	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	5.60E-04
18	GO:0035250: UDP-galactosyltransferase activity	5.60E-04
19	GO:0004362: glutathione-disulfide reductase activity	5.60E-04
20	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.60E-04
21	GO:0031177: phosphopantetheine binding	5.60E-04
22	GO:0004467: long-chain fatty acid-CoA ligase activity	5.60E-04
23	GO:0008194: UDP-glycosyltransferase activity	5.60E-04
24	GO:0004824: lysine-tRNA ligase activity	5.60E-04
25	GO:0004827: proline-tRNA ligase activity	5.60E-04
26	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	5.60E-04
27	GO:0046914: transition metal ion binding	1.00E-03
28	GO:0043531: ADP binding	1.22E-03
29	GO:0004392: heme oxygenase (decyclizing) activity	1.30E-03
30	GO:0051920: peroxiredoxin activity	1.30E-03
31	GO:0008977: prephenate dehydrogenase (NAD+) activity	1.30E-03
32	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.30E-03
33	GO:0004462: lactoylglutathione lyase activity	1.30E-03
34	GO:0004665: prephenate dehydrogenase (NADP+) activity	1.30E-03
35	GO:0019204: obsolete nucleotide phosphatase activity	1.30E-03
36	GO:0004853: uroporphyrinogen decarboxylase activity	1.30E-03
37	GO:0005347: ATP transmembrane transporter activity	1.30E-03
38	GO:0004812: aminoacyl-tRNA ligase activity	2.15E-03
39	GO:0015020: glucuronosyltransferase activity	2.16E-03
40	GO:0080116: glucuronoxylan glucuronosyltransferase activity	2.16E-03
41	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	3.16E-03
42	GO:0016209: antioxidant activity	3.16E-03
43	GO:0004659: prenyltransferase activity	3.16E-03
44	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	3.16E-03
45	GO:0008233: peptidase activity	5.57E-03
46	GO:0042802: identical protein binding	6.58E-03
47	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	6.97E-03
48	GO:0008236: serine-type peptidase activity	8.38E-03
49	GO:0048037: cofactor binding	1.54E-02
50	GO:0003690: double-stranded DNA binding	1.54E-02
51	GO:0015238: drug transmembrane transporter activity	1.94E-02
52	GO:0042803: protein homodimerization activity	2.00E-02
53	GO:0004527: exonuclease activity	2.15E-02
54	GO:0016760: cellulose synthase (UDP-forming) activity	2.15E-02
55	GO:0016746: transferase activity, transferring acyl groups	2.32E-02
56	GO:0016831: carboxy-lyase activity	2.38E-02
57	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.55E-02
58	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.61E-02
59	GO:0005524: ATP binding	2.88E-02
60	GO:0005507: copper ion binding	2.91E-02
61	GO:0015297: antiporter activity	3.34E-02
62	GO:0050660: flavin adenine dinucleotide binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.70E-17
2	GO:0009941: chloroplast envelope	1.56E-14
3	GO:0009570: chloroplast stroma	2.48E-14
4	GO:0009532: plastid stroma	1.60E-07
5	GO:0009840: chloroplastic endopeptidase Clp complex	1.80E-06
6	GO:0009579: thylakoid	4.98E-05
7	GO:0009706: chloroplast inner membrane	5.36E-04
8	GO:0019867: outer membrane	5.60E-04
9	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	5.60E-04
10	GO:0009526: plastid envelope	5.60E-04
11	GO:0005960: glycine cleavage complex	5.60E-04
12	GO:0080085: signal recognition particle, chloroplast targeting	5.60E-04
13	GO:0009533: chloroplast stromal thylakoid	1.30E-03
14	GO:0009535: chloroplast thylakoid membrane	1.70E-03
15	GO:0009536: plastid	1.98E-03
16	GO:0009534: chloroplast thylakoid	2.66E-03
17	GO:0005759: mitochondrial matrix	6.03E-03
18	GO:0010319: stromule	9.72E-03
19	GO:0048046: apoplast	1.61E-02
20	GO:0042651: thylakoid membrane	1.94E-02
21	GO:0005739: mitochondrion	1.97E-02