co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G083950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
2	GO:0042780: tRNA 3'-end processing	0.00E+00
3	GO:1900865: chloroplast RNA modification	0.00E+00
4	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
5	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	0.00E+00
6	GO:0048564: photosystem I assembly	0.00E+00
7	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
8	GO:0043953: protein transport by the Tat complex	0.00E+00
9	GO:0010239: chloroplast mRNA processing	0.00E+00
10	GO:0032543: mitochondrial translation	0.00E+00
11	GO:0046506: sulfolipid biosynthetic process	0.00E+00
12	GO:1901259: chloroplast rRNA processing	0.00E+00
13	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
14	GO:0090342: regulation of cell aging	0.00E+00
15	GO:0010027: thylakoid membrane organization	1.45E-13
16	GO:0006364: rRNA processing	4.83E-11
17	GO:0009658: chloroplast organization	1.12E-10
18	GO:0010207: photosystem II assembly	3.38E-09
19	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	5.04E-09
20	GO:0045038: protein import into chloroplast thylakoid membrane	1.50E-08
21	GO:0006399: tRNA metabolic process	1.96E-08
22	GO:0009306: protein secretion	2.87E-07
23	GO:0045036: protein targeting to chloroplast	5.98E-07
24	GO:0006655: phosphatidylglycerol biosynthetic process	9.68E-07
25	GO:0042793: transcription from plastid promoter	9.68E-07
26	GO:0009902: chloroplast relocation	1.75E-06
27	GO:0010103: stomatal complex morphogenesis	6.44E-06
28	GO:0016556: mRNA modification	8.76E-06
29	GO:0042372: phylloquinone biosynthetic process	3.99E-05
30	GO:0009073: aromatic amino acid family biosynthetic process	5.73E-05
31	GO:0016226: iron-sulfur cluster assembly	1.14E-04
32	GO:0045893: positive regulation of transcription, DNA-templated	1.44E-04
33	GO:0006457: protein folding	2.33E-04
34	GO:0006782: protoporphyrinogen IX biosynthetic process	2.80E-04
35	GO:0006779: porphyrin-containing compound biosynthetic process	2.95E-04
36	GO:0006098: pentose-phosphate shunt	4.48E-04
37	GO:0006200: obsolete ATP catabolic process	4.57E-04
38	GO:0034660: ncRNA metabolic process	1.05E-03
39	GO:0000023: maltose metabolic process	1.13E-03
40	GO:0006429: leucyl-tRNA aminoacylation	1.16E-03
41	GO:0006591: ornithine metabolic process	1.16E-03
42	GO:0009959: negative gravitropism	1.16E-03
43	GO:0016050: vesicle organization	1.16E-03
44	GO:0071722: detoxification of arsenic-containing substance	1.16E-03
45	GO:0019252: starch biosynthetic process	1.41E-03
46	GO:0035304: regulation of protein dephosphorylation	1.42E-03
47	GO:0009773: photosynthetic electron transport in photosystem I	1.42E-03
48	GO:0015995: chlorophyll biosynthetic process	1.98E-03
49	GO:0009407: toxin catabolic process	2.27E-03
50	GO:0010253: UDP-rhamnose biosynthetic process	2.60E-03
51	GO:0010192: mucilage biosynthetic process	2.60E-03
52	GO:0009688: abscisic acid biosynthetic process	2.60E-03
53	GO:0009642: response to light intensity	2.60E-03
54	GO:0005987: sucrose catabolic process	2.60E-03
55	GO:0009225: nucleotide-sugar metabolic process	2.60E-03
56	GO:1901671: positive regulation of superoxide dismutase activity	2.60E-03
57	GO:0006432: phenylalanyl-tRNA aminoacylation	2.60E-03
58	GO:0030308: negative regulation of cell growth	2.60E-03
59	GO:0051555: flavonol biosynthetic process	2.60E-03
60	GO:0010236: plastoquinone biosynthetic process	2.60E-03
61	GO:0006184: obsolete GTP catabolic process	3.41E-03
62	GO:0019344: cysteine biosynthetic process	4.09E-03
63	GO:0006450: regulation of translational fidelity	4.43E-03
64	GO:0007186: G-protein coupled receptor signaling pathway	4.43E-03
65	GO:0006733: oxidoreduction coenzyme metabolic process	4.43E-03
66	GO:0010038: response to metal ion	4.43E-03
67	GO:0051085: chaperone mediated protein folding requiring cofactor	4.43E-03
68	GO:0010731: protein glutathionylation	4.43E-03
69	GO:0045226: extracellular polysaccharide biosynthetic process	4.43E-03
70	GO:0016075: rRNA catabolic process	4.43E-03
71	GO:0043067: regulation of programmed cell death	4.43E-03
72	GO:0009231: riboflavin biosynthetic process	4.43E-03
73	GO:0009247: glycolipid biosynthetic process	4.43E-03
74	GO:0019760: glucosinolate metabolic process	4.43E-03
75	GO:0051607: defense response to virus	4.79E-03
76	GO:0008299: isoprenoid biosynthetic process	5.56E-03
77	GO:0010214: seed coat development	6.53E-03
78	GO:0000373: Group II intron splicing	6.53E-03
79	GO:0042026: protein refolding	6.53E-03
80	GO:0071704: organic substance metabolic process	6.53E-03
81	GO:0006165: nucleoside diphosphate phosphorylation	6.53E-03
82	GO:0006228: UTP biosynthetic process	6.53E-03
83	GO:0010304: PSII associated light-harvesting complex II catabolic process	6.53E-03
84	GO:0051205: protein insertion into membrane	6.53E-03
85	GO:0009117: nucleotide metabolic process	6.53E-03
86	GO:0045037: protein import into chloroplast stroma	6.53E-03
87	GO:0019375: galactolipid biosynthetic process	6.53E-03
88	GO:0006183: GTP biosynthetic process	6.53E-03
89	GO:0006241: CTP biosynthetic process	6.53E-03
90	GO:0019684: photosynthesis, light reaction	7.35E-03
91	GO:0009657: plastid organization	7.35E-03
92	GO:0035196: production of miRNAs involved in gene silencing by miRNA	8.33E-03
93	GO:0010267: production of ta-siRNAs involved in RNA interference	8.33E-03
94	GO:0070084: protein initiator methionine removal	8.93E-03
95	GO:0009308: amine metabolic process	8.93E-03
96	GO:0006569: tryptophan catabolic process	8.93E-03
97	GO:0010315: auxin efflux	8.93E-03
98	GO:0009772: photosynthetic electron transport in photosystem II	8.93E-03
99	GO:0019748: secondary metabolic process	8.93E-03
100	GO:0010468: regulation of gene expression	8.93E-03
101	GO:0048229: gametophyte development	1.16E-02
102	GO:0000105: histidine biosynthetic process	1.16E-02
103	GO:0006749: glutathione metabolic process	1.16E-02
104	GO:0009108: coenzyme biosynthetic process	1.45E-02
105	GO:0010583: response to cyclopentenone	1.45E-02
106	GO:0006189: 'de novo' IMP biosynthetic process	1.45E-02
107	GO:0009106: lipoate metabolic process	1.45E-02
108	GO:0030003: cellular cation homeostasis	1.45E-02
109	GO:0006766: vitamin metabolic process	1.45E-02
110	GO:0009987: cellular process	1.45E-02
111	GO:0009411: response to UV	1.45E-02
112	GO:0009814: defense response, incompatible interaction	1.45E-02
113	GO:0015693: magnesium ion transport	1.76E-02
114	GO:0043039: tRNA aminoacylation	1.76E-02
115	GO:0051604: protein maturation	1.76E-02
116	GO:0006396: RNA processing	2.02E-02
117	GO:0009735: response to cytokinin	2.04E-02
118	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.10E-02
119	GO:0045087: innate immune response	2.10E-02
120	GO:0009585: red, far-red light phototransduction	2.10E-02
121	GO:0016117: carotenoid biosynthetic process	2.39E-02
122	GO:0009684: indoleacetic acid biosynthetic process	2.45E-02
123	GO:0019761: glucosinolate biosynthetic process	2.57E-02
124	GO:0009567: double fertilization forming a zygote and endosperm	2.83E-02
125	GO:0006354: DNA-templated transcription, elongation	2.83E-02
126	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.23E-02
127	GO:0006546: glycine catabolic process	3.23E-02
128	GO:0048481: plant ovule development	3.39E-02
129	GO:0006418: tRNA aminoacylation for protein translation	3.61E-02
130	GO:0009723: response to ethylene	3.84E-02
131	GO:0015979: photosynthesis	3.95E-02
132	GO:0006414: translational elongation	4.07E-02
133	GO:0008033: tRNA processing	4.08E-02
134	GO:0015996: chlorophyll catabolic process	4.53E-02
135	GO:0005982: starch metabolic process	4.53E-02
136	GO:0006636: unsaturated fatty acid biosynthetic process	4.53E-02
137	GO:0009630: gravitropism	4.99E-02
138	GO:0042545: cell wall modification	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0003919: FMN adenylyltransferase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	0.00E+00
4	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
5	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
8	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
9	GO:0051743: red chlorophyll catabolite reductase activity	0.00E+00
10	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
11	GO:0070180: large ribosomal subunit rRNA binding	0.00E+00
12	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
13	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
14	GO:0004853: uroporphyrinogen decarboxylase activity	3.99E-05
15	GO:0051082: unfolded protein binding	1.20E-04
16	GO:0008565: protein transporter activity	1.77E-04
17	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.05E-03
18	GO:0004525: ribonuclease III activity	1.05E-03
19	GO:0010280: UDP-L-rhamnose synthase activity	1.16E-03
20	GO:0004362: glutathione-disulfide reductase activity	1.16E-03
21	GO:0004585: ornithine carbamoyltransferase activity	1.16E-03
22	GO:0008146: sulfotransferase activity	1.16E-03
23	GO:0050377: UDP-glucose 4,6-dehydratase activity	1.16E-03
24	GO:0004823: leucine-tRNA ligase activity	1.16E-03
25	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.16E-03
26	GO:0016887: ATPase activity	1.21E-03
27	GO:0031072: heat shock protein binding	1.63E-03
28	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.27E-03
29	GO:0016630: protochlorophyllide reductase activity	2.60E-03
30	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.60E-03
31	GO:0047134: protein-disulfide reductase activity	2.60E-03
32	GO:0004826: phenylalanine-tRNA ligase activity	2.60E-03
33	GO:0004462: lactoylglutathione lyase activity	2.60E-03
34	GO:0005496: steroid binding	2.60E-03
35	GO:0000774: adenyl-nucleotide exchange factor activity	4.43E-03
36	GO:0003959: NADPH dehydrogenase activity	4.43E-03
37	GO:0016743: carboxyl- or carbamoyltransferase activity	4.43E-03
38	GO:0008460: dTDP-glucose 4,6-dehydratase activity	4.43E-03
39	GO:0008831: dTDP-4-dehydrorhamnose reductase activity	4.43E-03
40	GO:0000287: magnesium ion binding	5.79E-03
41	GO:0016831: carboxy-lyase activity	6.42E-03
42	GO:0004550: nucleoside diphosphate kinase activity	6.53E-03
43	GO:0003913: DNA photolyase activity	6.53E-03
44	GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity	6.53E-03
45	GO:0070569: uridylyltransferase activity	6.53E-03
46	GO:0004659: prenyltransferase activity	6.53E-03
47	GO:0004765: shikimate kinase activity	6.53E-03
48	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	6.53E-03
49	GO:0070006: metalloaminopeptidase activity	8.93E-03
50	GO:0016868: intramolecular transferase activity, phosphotransferases	8.93E-03
51	GO:0016987: sigma factor activity	8.93E-03
52	GO:0008235: metalloexopeptidase activity	1.16E-02
53	GO:0008173: RNA methyltransferase activity	1.16E-02
54	GO:0016817: hydrolase activity, acting on acid anhydrides	1.16E-02
55	GO:0003723: RNA binding	1.22E-02
56	GO:0005525: GTP binding	1.39E-02
57	GO:0004222: metalloendopeptidase activity	1.43E-02
58	GO:0000166: nucleotide binding	1.69E-02
59	GO:0051087: chaperone binding	1.76E-02
60	GO:0008312: 7S RNA binding	1.76E-02
61	GO:0043022: ribosome binding	1.76E-02
62	GO:0004575: sucrose alpha-glucosidase activity	1.76E-02
63	GO:0008266: poly(U) RNA binding	2.10E-02
64	GO:0008236: serine-type peptidase activity	2.39E-02
65	GO:0004177: aminopeptidase activity	2.45E-02
66	GO:0015095: magnesium ion transmembrane transporter activity	2.45E-02
67	GO:0046873: metal ion transmembrane transporter activity	2.45E-02
68	GO:0000049: tRNA binding	2.45E-02
69	GO:0004252: serine-type endopeptidase activity	2.50E-02
70	GO:0003924: GTPase activity	2.58E-02
71	GO:0046914: transition metal ion binding	2.83E-02
72	GO:0003746: translation elongation factor activity	2.96E-02
73	GO:0008233: peptidase activity	3.39E-02
74	GO:0017111: nucleoside-triphosphatase activity	3.53E-02
75	GO:0004812: aminoacyl-tRNA ligase activity	4.07E-02
76	GO:0048038: quinone binding	4.53E-02
77	GO:0005216: ion channel activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009513: etioplast	0.00E+00
3	GO:0031361: integral component of thylakoid membrane	0.00E+00
4	GO:0043235: receptor complex	0.00E+00
5	GO:0042646: plastid nucleoid	0.00E+00
6	GO:0009537: proplastid	0.00E+00
7	GO:0055035: plastid thylakoid membrane	0.00E+00
8	GO:0009507: chloroplast	2.50E-26
9	GO:0009570: chloroplast stroma	1.32E-16
10	GO:0009535: chloroplast thylakoid membrane	1.31E-12
11	GO:0009941: chloroplast envelope	1.74E-11
12	GO:0009532: plastid stroma	1.59E-06
13	GO:0009579: thylakoid	1.61E-06
14	GO:0009295: nucleoid	1.36E-05
15	GO:0009534: chloroplast thylakoid	3.31E-04
16	GO:0009840: chloroplastic endopeptidase Clp complex	4.79E-04
17	GO:0010319: stromule	8.03E-04
18	GO:0009527: plastid outer membrane	1.16E-03
19	GO:0009526: plastid envelope	1.16E-03
20	GO:0044445: cytosolic part	1.16E-03
21	GO:0080085: signal recognition particle, chloroplast targeting	1.16E-03
22	GO:0009509: chromoplast	1.16E-03
23	GO:0009528: plastid inner membrane	1.16E-03
24	GO:0031977: thylakoid lumen	5.41E-03
25	GO:0009508: plastid chromosome	8.93E-03
26	GO:0019013: viral nucleocapsid	1.05E-02
27	GO:0019898: extrinsic component of membrane	1.16E-02
28	GO:0031225: anchored component of membrane	1.16E-02
29	GO:0009706: chloroplast inner membrane	1.43E-02
30	GO:0009654: photosystem II oxygen evolving complex	1.45E-02
31	GO:0048500: signal recognition particle	1.45E-02
32	GO:0009501: amyloplast	1.45E-02
33	GO:0009536: plastid	1.58E-02
34	GO:0005759: mitochondrial matrix	1.72E-02
35	GO:0009523: photosystem II	2.04E-02
36	GO:0009543: chloroplast thylakoid lumen	4.08E-02