co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G083716

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	0.00E+00
2	GO:0042780: tRNA 3'-end processing	0.00E+00
3	GO:1900865: chloroplast RNA modification	0.00E+00
4	GO:0010270: photosystem II oxygen evolving complex assembly	0.00E+00
5	GO:0010157: response to chlorate	0.00E+00
6	GO:0043686: co-translational protein modification	0.00E+00
7	GO:0006591: ornithine metabolic process	0.00E+00
8	GO:0090391: granum assembly	0.00E+00
9	GO:0048564: photosystem I assembly	0.00E+00
10	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
11	GO:0043953: protein transport by the Tat complex	0.00E+00
12	GO:0000372: Group I intron splicing	0.00E+00
13	GO:0018160: peptidyl-pyrromethane cofactor linkage	0.00E+00
14	GO:0032543: mitochondrial translation	0.00E+00
15	GO:0046506: sulfolipid biosynthetic process	0.00E+00
16	GO:0010117: photoprotection	0.00E+00
17	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
18	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
19	GO:0009658: chloroplast organization	1.80E-16
20	GO:0006364: rRNA processing	1.55E-09
21	GO:0006399: tRNA metabolic process	2.83E-08
22	GO:0010027: thylakoid membrane organization	3.69E-08
23	GO:0006457: protein folding	4.35E-08
24	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.33E-07
25	GO:0009306: protein secretion	3.89E-07
26	GO:0042793: transcription from plastid promoter	1.39E-06
27	GO:0006779: porphyrin-containing compound biosynthetic process	1.82E-05
28	GO:0045893: positive regulation of transcription, DNA-templated	2.59E-05
29	GO:0045036: protein targeting to chloroplast	2.69E-05
30	GO:0006655: phosphatidylglycerol biosynthetic process	3.83E-05
31	GO:0009902: chloroplast relocation	4.31E-05
32	GO:1901671: positive regulation of superoxide dismutase activity	4.72E-05
33	GO:0010207: photosystem II assembly	1.43E-04
34	GO:0045038: protein import into chloroplast thylakoid membrane	3.25E-04
35	GO:0000373: Group II intron splicing	3.25E-04
36	GO:0006782: protoporphyrinogen IX biosynthetic process	3.25E-04
37	GO:0045037: protein import into chloroplast stroma	3.25E-04
38	GO:0006353: DNA-templated transcription, termination	3.25E-04
39	GO:0010468: regulation of gene expression	5.54E-04
40	GO:0009073: aromatic amino acid family biosynthetic process	6.90E-04
41	GO:0019344: cysteine biosynthetic process	7.87E-04
42	GO:0033014: tetrapyrrole biosynthetic process	1.20E-03
43	GO:0010206: photosystem II repair	1.20E-03
44	GO:0019538: protein metabolic process	1.20E-03
45	GO:0006429: leucyl-tRNA aminoacylation	1.28E-03
46	GO:0009959: negative gravitropism	1.28E-03
47	GO:0006788: heme oxidation	1.28E-03
48	GO:0010103: stomatal complex morphogenesis	1.46E-03
49	GO:0035304: regulation of protein dephosphorylation	1.69E-03
50	GO:0015995: chlorophyll biosynthetic process	2.43E-03
51	GO:0009407: toxin catabolic process	2.60E-03
52	GO:0010024: phytochromobilin biosynthetic process	2.86E-03
53	GO:0009102: biotin biosynthetic process	2.86E-03
54	GO:0009642: response to light intensity	2.86E-03
55	GO:0010380: regulation of chlorophyll biosynthetic process	2.86E-03
56	GO:0019464: glycine decarboxylation via glycine cleavage system	2.86E-03
57	GO:0030308: negative regulation of cell growth	2.86E-03
58	GO:0019481: L-alanine catabolic process, by transamination	2.86E-03
59	GO:0016556: mRNA modification	3.21E-03
60	GO:0006546: glycine catabolic process	3.92E-03
61	GO:0006450: regulation of translational fidelity	4.87E-03
62	GO:0006733: oxidoreduction coenzyme metabolic process	4.87E-03
63	GO:0010731: protein glutathionylation	4.87E-03
64	GO:0016075: rRNA catabolic process	4.87E-03
65	GO:0009231: riboflavin biosynthetic process	4.87E-03
66	GO:0009247: glycolipid biosynthetic process	4.87E-03
67	GO:0015867: ATP transport	4.87E-03
68	GO:0019760: glucosinolate metabolic process	4.87E-03
69	GO:0000304: response to singlet oxygen	4.87E-03
70	GO:0051607: defense response to virus	5.49E-03
71	GO:0008299: isoprenoid biosynthetic process	6.40E-03
72	GO:0016226: iron-sulfur cluster assembly	6.47E-03
73	GO:0006165: nucleoside diphosphate phosphorylation	7.21E-03
74	GO:0006228: UTP biosynthetic process	7.21E-03
75	GO:0010417: glucuronoxylan biosynthetic process	7.21E-03
76	GO:0009117: nucleotide metabolic process	7.21E-03
77	GO:0019375: galactolipid biosynthetic process	7.21E-03
78	GO:0006183: GTP biosynthetic process	7.21E-03
79	GO:0006241: CTP biosynthetic process	7.21E-03
80	GO:0019684: photosynthesis, light reaction	8.45E-03
81	GO:0030154: cell differentiation	8.45E-03
82	GO:0035196: production of miRNAs involved in gene silencing by miRNA	9.59E-03
83	GO:0010267: production of ta-siRNAs involved in RNA interference	9.59E-03
84	GO:0009308: amine metabolic process	9.86E-03
85	GO:0019748: secondary metabolic process	9.86E-03
86	GO:0009408: response to heat	1.03E-02
87	GO:0006098: pentose-phosphate shunt	1.10E-02
88	GO:0000105: histidine biosynthetic process	1.28E-02
89	GO:0006749: glutathione metabolic process	1.28E-02
90	GO:0031347: regulation of defense response	1.28E-02
91	GO:0006950: response to stress	1.33E-02
92	GO:0009108: coenzyme biosynthetic process	1.60E-02
93	GO:0010583: response to cyclopentenone	1.60E-02
94	GO:0006189: 'de novo' IMP biosynthetic process	1.60E-02
95	GO:0034660: ncRNA metabolic process	1.60E-02
96	GO:0006801: superoxide metabolic process	1.60E-02
97	GO:0009106: lipoate metabolic process	1.60E-02
98	GO:0032880: regulation of protein localization	1.60E-02
99	GO:0009704: de-etiolation	1.60E-02
100	GO:0006766: vitamin metabolic process	1.60E-02
101	GO:0009411: response to UV	1.60E-02
102	GO:0006184: obsolete GTP catabolic process	1.65E-02
103	GO:0006508: proteolysis	1.89E-02
104	GO:0051604: protein maturation	1.95E-02
105	GO:0006520: cellular amino acid metabolic process	1.98E-02
106	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.31E-02
107	GO:0045087: innate immune response	2.31E-02
108	GO:0001666: response to hypoxia	2.31E-02
109	GO:0009585: red, far-red light phototransduction	2.31E-02
110	GO:0009735: response to cytokinin	2.35E-02
111	GO:0006396: RNA processing	2.41E-02
112	GO:0000302: response to reactive oxygen species	2.71E-02
113	GO:0009834: plant-type secondary cell wall biogenesis	2.71E-02
114	GO:0009637: response to blue light	2.74E-02
115	GO:0009416: response to light stimulus	2.97E-02
116	GO:0019252: starch biosynthetic process	3.12E-02
117	GO:0010114: response to red light	3.18E-02
118	GO:0045492: xylan biosynthetic process	3.56E-02
119	GO:0010218: response to far red light	3.64E-02
120	GO:0000023: maltose metabolic process	3.89E-02
121	GO:0009723: response to ethylene	4.40E-02
122	GO:0031408: oxylipin biosynthetic process	4.50E-02
123	GO:0048316: seed development	4.50E-02
124	GO:0005982: starch metabolic process	5.00E-02
125	GO:0006636: unsaturated fatty acid biosynthetic process	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0003919: FMN adenylyltransferase activity	0.00E+00
2	GO:0004076: biotin synthase activity	0.00E+00
3	GO:0003879: ATP phosphoribosyltransferase activity	0.00E+00
4	GO:0046408: chlorophyll synthetase activity	0.00E+00
5	GO:0042781: 3'-tRNA processing endoribonuclease activity	0.00E+00
6	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
7	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
8	GO:0042586: peptide deformylase activity	0.00E+00
9	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	0.00E+00
10	GO:0004418: hydroxymethylbilane synthase activity	0.00E+00
11	GO:0004109: coproporphyrinogen oxidase activity	0.00E+00
12	GO:0009977: proton motive force dependent protein transmembrane transporter activity	0.00E+00
13	GO:0046507: UDPsulfoquinovose synthase activity	0.00E+00
14	GO:0004853: uroporphyrinogen decarboxylase activity	4.72E-05
15	GO:0000774: adenyl-nucleotide exchange factor activity	1.55E-04
16	GO:0016743: carboxyl- or carbamoyltransferase activity	1.55E-04
17	GO:0051082: unfolded protein binding	1.76E-04
18	GO:0008565: protein transporter activity	2.28E-04
19	GO:0004252: serine-type endopeptidase activity	3.34E-04
20	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.20E-03
21	GO:0004525: ribonuclease III activity	1.20E-03
22	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.28E-03
23	GO:0004362: glutathione-disulfide reductase activity	1.28E-03
24	GO:0008146: sulfotransferase activity	1.28E-03
25	GO:0004823: leucine-tRNA ligase activity	1.28E-03
26	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.28E-03
27	GO:0051087: chaperone binding	1.62E-03
28	GO:0016630: protochlorophyllide reductase activity	2.86E-03
29	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.86E-03
30	GO:0047134: protein-disulfide reductase activity	2.86E-03
31	GO:0004462: lactoylglutathione lyase activity	2.86E-03
32	GO:0005347: ATP transmembrane transporter activity	2.86E-03
33	GO:0004392: heme oxygenase (decyclizing) activity	2.86E-03
34	GO:0005496: steroid binding	2.86E-03
35	GO:0005507: copper ion binding	3.04E-03
36	GO:0046914: transition metal ion binding	3.21E-03
37	GO:0003959: NADPH dehydrogenase activity	4.87E-03
38	GO:0015020: glucuronosyltransferase activity	4.87E-03
39	GO:0080116: glucuronoxylan glucuronosyltransferase activity	4.87E-03
40	GO:0004550: nucleoside diphosphate kinase activity	7.21E-03
41	GO:0003913: DNA photolyase activity	7.21E-03
42	GO:0070569: uridylyltransferase activity	7.21E-03
43	GO:0004659: prenyltransferase activity	7.21E-03
44	GO:0004765: shikimate kinase activity	7.21E-03
45	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	7.21E-03
46	GO:0016831: carboxy-lyase activity	7.39E-03
47	GO:0016987: sigma factor activity	9.86E-03
48	GO:0008173: RNA methyltransferase activity	1.28E-02
49	GO:0016817: hydrolase activity, acting on acid anhydrides	1.28E-02
50	GO:0031072: heat shock protein binding	1.35E-02
51	GO:0042803: protein homodimerization activity	1.50E-02
52	GO:0008233: peptidase activity	1.54E-02
53	GO:0016597: amino acid binding	1.81E-02
54	GO:0005525: GTP binding	1.87E-02
55	GO:0004784: superoxide dismutase activity	1.95E-02
56	GO:0043022: ribosome binding	1.95E-02
57	GO:0008266: poly(U) RNA binding	2.31E-02
58	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.71E-02
59	GO:0003690: double-stranded DNA binding	3.56E-02
60	GO:0048038: quinone binding	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	0.00E+00
2	GO:0009526: plastid envelope	0.00E+00
3	GO:0042646: plastid nucleoid	0.00E+00
4	GO:0055035: plastid thylakoid membrane	0.00E+00
5	GO:0009507: chloroplast	2.55E-29
6	GO:0009941: chloroplast envelope	7.16E-20
7	GO:0009570: chloroplast stroma	9.17E-16
8	GO:0009535: chloroplast thylakoid membrane	4.81E-12
9	GO:0009579: thylakoid	7.88E-10
10	GO:0009532: plastid stroma	2.83E-08
11	GO:0009840: chloroplastic endopeptidase Clp complex	1.36E-05
12	GO:0009534: chloroplast thylakoid	4.36E-04
13	GO:0005960: glycine cleavage complex	1.28E-03
14	GO:0080085: signal recognition particle, chloroplast targeting	1.28E-03
15	GO:0019867: outer membrane	1.28E-03
16	GO:0009536: plastid	2.41E-03
17	GO:0009706: chloroplast inner membrane	2.50E-03
18	GO:0009533: chloroplast stromal thylakoid	2.86E-03
19	GO:0005759: mitochondrial matrix	3.18E-03
20	GO:0009295: nucleoid	3.92E-03
21	GO:0031977: thylakoid lumen	6.47E-03
22	GO:0009707: chloroplast outer membrane	9.86E-03
23	GO:0019013: viral nucleocapsid	1.21E-02
24	GO:0019898: extrinsic component of membrane	1.28E-02
25	GO:0009654: photosystem II oxygen evolving complex	1.60E-02
26	GO:0010319: stromule	3.18E-02
27	GO:0042651: thylakoid membrane	4.50E-02
28	GO:0009543: chloroplast thylakoid lumen	4.50E-02
29	GO:0048046: apoplast	4.79E-02