co-expression network

GO Enrichment Analysis of Co-expressed Genes with

GRMZM2G082940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010157: response to chlorate	0.00E+00
2	GO:0090391: granum assembly	0.00E+00
3	GO:0046653: tetrahydrofolate metabolic process	0.00E+00
4	GO:0010117: photoprotection	0.00E+00
5	GO:0030494: bacteriochlorophyll biosynthetic process	0.00E+00
6	GO:0006457: protein folding	5.58E-09
7	GO:0045037: protein import into chloroplast stroma	5.16E-05
8	GO:0006353: DNA-templated transcription, termination	5.16E-05
9	GO:0010468: regulation of gene expression	9.40E-05
10	GO:0009658: chloroplast organization	9.92E-05
11	GO:0010206: photosystem II repair	2.21E-04
12	GO:0019538: protein metabolic process	2.21E-04
13	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	4.14E-04
14	GO:0051512: positive regulation of unidimensional cell growth	4.14E-04
15	GO:0010587: miRNA catabolic process	4.14E-04
16	GO:0009968: negative regulation of signal transduction	4.14E-04
17	GO:0006788: heme oxidation	4.14E-04
18	GO:0043157: response to cation stress	4.14E-04
19	GO:0018160: peptidyl-pyrromethane cofactor linkage	4.14E-04
20	GO:0032543: mitochondrial translation	4.14E-04
21	GO:0080141: regulation of jasmonic acid biosynthetic process	4.14E-04
22	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9.07E-04
23	GO:0010024: phytochromobilin biosynthetic process	9.68E-04
24	GO:0009102: biotin biosynthetic process	9.68E-04
25	GO:0009642: response to light intensity	9.68E-04
26	GO:0010380: regulation of chlorophyll biosynthetic process	9.68E-04
27	GO:1901671: positive regulation of superoxide dismutase activity	9.68E-04
28	GO:0019481: L-alanine catabolic process, by transamination	9.68E-04
29	GO:0042793: transcription from plastid promoter	1.11E-03
30	GO:0000304: response to singlet oxygen	1.63E-03
31	GO:0006450: regulation of translational fidelity	1.63E-03
32	GO:0051085: chaperone mediated protein folding requiring cofactor	1.63E-03
33	GO:0015867: ATP transport	1.63E-03
34	GO:0044267: cellular protein metabolic process	1.92E-03
35	GO:0009627: systemic acquired resistance	2.15E-03
36	GO:0045038: protein import into chloroplast thylakoid membrane	2.36E-03
37	GO:0042026: protein refolding	2.36E-03
38	GO:0006790: sulfur compound metabolic process	2.36E-03
39	GO:0006401: RNA catabolic process	2.36E-03
40	GO:0006508: proteolysis	3.01E-03
41	GO:0006081: cellular aldehyde metabolic process	3.20E-03
42	GO:0009902: chloroplast relocation	3.93E-03
43	GO:0031347: regulation of defense response	4.15E-03
44	GO:0006749: glutathione metabolic process	4.15E-03
45	GO:0033014: tetrapyrrole biosynthetic process	5.16E-03
46	GO:0006189: 'de novo' IMP biosynthetic process	5.16E-03
47	GO:0032880: regulation of protein localization	5.16E-03
48	GO:0009704: de-etiolation	5.16E-03
49	GO:0019344: cysteine biosynthetic process	5.44E-03
50	GO:0051604: protein maturation	6.26E-03
51	GO:0009628: response to abiotic stimulus	6.26E-03
52	GO:0045087: innate immune response	7.44E-03
53	GO:0001666: response to hypoxia	7.44E-03
54	GO:0009407: toxin catabolic process	8.68E-03
55	GO:0000302: response to reactive oxygen species	8.68E-03
56	GO:0015995: chlorophyll biosynthetic process	1.11E-02
57	GO:0046854: phosphatidylinositol phosphorylation	1.28E-02
58	GO:0006655: phosphatidylglycerol biosynthetic process	1.43E-02
59	GO:0031408: oxylipin biosynthetic process	1.43E-02
60	GO:0051607: defense response to virus	1.43E-02
61	GO:0048316: seed development	1.43E-02
62	GO:0010207: photosystem II assembly	1.58E-02
63	GO:0009058: biosynthetic process	1.63E-02
64	GO:0045893: positive regulation of transcription, DNA-templated	1.81E-02
65	GO:0030154: cell differentiation	1.92E-02
66	GO:0010267: production of ta-siRNAs involved in RNA interference	2.10E-02
67	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.10E-02
68	GO:0008219: cell death	2.10E-02
69	GO:0010155: regulation of proton transport	2.10E-02
70	GO:0009409: response to cold	2.13E-02
71	GO:0010027: thylakoid membrane organization	2.24E-02
72	GO:0009416: response to light stimulus	2.24E-02
73	GO:0035304: regulation of protein dephosphorylation	2.46E-02
74	GO:0046777: protein autophosphorylation	2.46E-02
75	GO:0009738: abscisic acid-activated signaling pathway	2.85E-02
76	GO:0006098: pentose-phosphate shunt	2.91E-02
77	GO:0009853: photorespiration	3.26E-02
78	GO:0006626: protein targeting to mitochondrion	3.47E-02
79	GO:0030163: protein catabolic process	3.68E-02
80	GO:0006184: obsolete GTP catabolic process	3.80E-02
81	GO:0048573: photoperiodism, flowering	3.91E-02
82	GO:0009073: aromatic amino acid family biosynthetic process	4.13E-02
83	GO:0016117: carotenoid biosynthetic process	4.36E-02
84	GO:0009637: response to blue light	4.36E-02
85	GO:0019761: glucosinolate biosynthetic process	4.59E-02
86	GO:0010114: response to red light	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0046408: chlorophyll synthetase activity	0.00E+00
3	GO:0008864: formyltetrahydrofolate deformylase activity	0.00E+00
4	GO:0000774: adenyl-nucleotide exchange factor activity	2.26E-05
5	GO:0004252: serine-type endopeptidase activity	6.47E-05
6	GO:0051087: chaperone binding	3.06E-04
7	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.14E-04
8	GO:0004362: glutathione-disulfide reductase activity	4.14E-04
9	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	4.14E-04
10	GO:0004418: hydroxymethylbilane synthase activity	4.14E-04
11	GO:0004392: heme oxygenase (decyclizing) activity	9.68E-04
12	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	9.68E-04
13	GO:0019204: obsolete nucleotide phosphatase activity	9.68E-04
14	GO:0005347: ATP transmembrane transporter activity	9.68E-04
15	GO:0051082: unfolded protein binding	1.20E-03
16	GO:0042803: protein homodimerization activity	1.91E-03
17	GO:0004659: prenyltransferase activity	2.36E-03
18	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	2.36E-03
19	GO:0016668: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	2.36E-03
20	GO:0016884: carbon-nitrogen ligase activity, with glutamine as amido-N-donor	5.16E-03
21	GO:0008266: poly(U) RNA binding	7.44E-03
22	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.68E-03
23	GO:0046914: transition metal ion binding	1.00E-02
24	GO:0008233: peptidase activity	1.05E-02
25	GO:0003690: double-stranded DNA binding	1.14E-02
26	GO:0005507: copper ion binding	1.53E-02
27	GO:0004650: polygalacturonase activity	1.59E-02
28	GO:0031072: heat shock protein binding	2.65E-02
29	GO:0042802: identical protein binding	3.68E-02
30	GO:0030170: pyridoxal phosphate binding	3.68E-02
31	GO:0005524: ATP binding	4.07E-02
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.13E-02
33	GO:0008236: serine-type peptidase activity	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0019867: outer membrane	0.00E+00
2	GO:0009526: plastid envelope	0.00E+00
3	GO:0042646: plastid nucleoid	0.00E+00
4	GO:0055035: plastid thylakoid membrane	0.00E+00
5	GO:0009941: chloroplast envelope	2.75E-13
6	GO:0009507: chloroplast	2.20E-10
7	GO:0009570: chloroplast stroma	4.73E-10
8	GO:0009532: plastid stroma	6.16E-08
9	GO:0009535: chloroplast thylakoid membrane	2.08E-05
10	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	4.14E-04
11	GO:0080085: signal recognition particle, chloroplast targeting	4.14E-04
12	GO:0009536: plastid	8.03E-04
13	GO:0009533: chloroplast stromal thylakoid	9.68E-04
14	GO:0009579: thylakoid	2.34E-03
15	GO:0009707: chloroplast outer membrane	3.20E-03
16	GO:0009840: chloroplastic endopeptidase Clp complex	3.20E-03
17	GO:0005759: mitochondrial matrix	3.93E-03
18	GO:0010319: stromule	6.30E-03
19	GO:0009534: chloroplast thylakoid	1.11E-02
20	GO:0005739: mitochondrion	1.19E-02
21	GO:0042651: thylakoid membrane	1.43E-02
22	GO:0009706: chloroplast inner membrane	3.05E-02